Rh7DG048600

Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015628
Physical Location & Seq
Forward (+)
3743006 .. 3745963
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG048600.1

Sequence Viewer

Length: 1806 bp
ATGGGTGAGGTTGATACCAAACCAATTGAATCAGTCCAGGCTGCTTTGTCCTTGTTTGAAGATAAAGCTGATCACCGGAAATCCCGCCCTACCAGCACCGATATGGAGAGTGAGAAAGAGAGAGAAATTGAAGGTATACTAAAGGATTTGGCCAATTACAAGGTGCAATTGGAAGCAAAGGATGCTGCCTATATGCAAGCTCTCCTTAAGCTGCAACACAATCAGTACACAGCAGAAGAGCTTTCCACTCTGGTTCAAAGCATTGAGATTGAGAGAGATGAGTACATACGAGACTGTAAAGAGGCTAGGACTCGCGTGGATGAACTCGAGTCCAAGGTGAAGGAGATGGCTGATCAGCTTTCGGAAACTGCCGAGCTACGCGAGCAGCTTATGCACGTTTTTAGCGAGTTGAAGGCCACACAAGCCGAGCTGTTTAGCATGGAAACTGACCTCGCGCGTGCCAGAGATTCAGAGCTCAAGGCCCTAACACAAGCGGAACTGATGGAGAGTGCTTTCGTCATGGAGCAAGAAAGGACAGAAGAGCTTGTGAGACAGGTTGCAGATCTCAATGAGGCGATATTCATGTCAAAAGGTGCTGCCATTGAGGCCGAGAATGACAAGTTAGCAATGTTATCTGAGAAAGATGCCGAGATTGAGCTAGCTACACAAGCTGCTCTTAAAGCACAGGAGCAGCTAGAAGACGCAAGAATACAAACACTAGCAGTTCAGGAGTTGGAGAATCAGCTCCTTTCCAAGTCTGAGTACATTGAAATGCTTAAATATGAGATCAAAGATGTAAATGAACAACTTGTTTTGTCCAAGAAGGCTGCTTCTGATGCTATTGATAATCTGAAGCTGGTACAAGAAGAGTTAGAAGGGATGGAAAGAAAGAACTTCGATCAGGATGGTTTGATTGAGTCACTTGAAATGGAATTGAATCAGTTAAAACAAGAGATAATAAATGCTAATGAAGTGGCTAATCGCTTGAAGGTTGATGTTGAAATTCTAACCAGCAAGTTACAGGAGGCAAGAAGTGAGATTGATGAAATCAAGCAGAGGGAAAACAATGCACTAGTTGAGATAGCAATGCTGGAATCTGAGCTGCATAGAGGAAGGTCAAAAATTGCAGCAGCTGAGGCAGCTGAAGCAAGAAAGGAGAACATGAAATCTGGGATGTATCTTGCAATTCAGCAACTAGCAATAGAAGCCGAAACTGCCAAGATGGAAAACAGAATGTTAAAACAAGGAGCAGATGGGGTAGAGGAAGAAGCTGATGAACAATATCAGGATGCTGAAGCTTCCGAAATTGAAGAACTCAATGTTGAAGAAGATCATGAAGAGAGAAAAGAACAGGATAATGGACAACTTATAACAATTTCGTTGAAGGAATATGAGTGCTTGATTGAGAAGGCAGAGAAGGCTGATCAAATTCCTGTGTCATTGGAGAAGGAACTTAGTTTTGGTCGACAGTCAAGCTTAAGCGCCACAGAAGACAAGTCTGAGTTGGAAAGGTTAGGGAAGGAGCTAGAGGCTGCTTTGGAAAAAGTAGTGCAATTCAGGAACCGAGCAGAACAGGCAGTTACGAGGGCTGATCTTGCTGAGACAGCTAAAGCAGGACTCGAGGATCAGATAAGGCGATGGAGAGAGCACAGGCAAAAGAGAAGGGCTGCTCTTATTGCACTTAGGGAGGTAGCTGCTCCAAAAGAATATGGATATCATGCTCCTCAAGAATTTAGCCTTCCTGAATACAATGAAATACAAAAGGAAAATCCCCCACTAGGTCAGGTACTTAACTTGAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

601

Amino Acids

68.57

Weight (kDa)

4.62

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 3 - 435 2.4e-23 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14430
malus_domestica MD06G1198500.v1.1 MD14G1206000.v1.1
prunus_persica Prupe.5G199300_v2.0.a1 Prupe.5G199300_v2.0.a1
pyrus_communis pycom14g17040
rosa_chinensis RchiOBHm_Chr7g0182231
rosa_laevigata RLG00000005138
rosa_multiflora Rmu_sc0000003.1_g000012
rosa_roxburghii Rroxscaffold_3G00271400
rosa_rugosa Rorug06G0446300
rosa_samantha Rh7AG049300 Rh7BG049400 Rh7CG050700 Rh7DG048600
rosa_wichuraiana Rw7G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1370
AccI GTMKAC 2 cut(s) 136, 1465
AccII CGCG 4 cut(s) 315, 381, 455, 457
AciI CCGC 2 cut(s) 85, 494
AclWI GGATC 1 cut(s) 1632
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 4 cut(s) 1002, 1428, 1730, 1799
AcuI CTGAAG 3 cut(s) 872, 1164, 1314
AfaI GTAC 5 cut(s) 227, 284, 764, 861, 1788
AfiI CCNNNNNNNGG 1 cut(s) 1778
AflII CTTAAG 2 cut(s) 206, 1477
AhlI ACTAGT 1 cut(s) 1072
AjnI CCWGG 1 cut(s) 36
AjuI GAANNNNNNNTTGG 2 cut(s) 1443, 1475
Alw21I GWGCWC 2 cut(s) 477, 1650
Alw26I GTCTC 3 cut(s) 285, 544, 1595
AlwI GGATC 1 cut(s) 1632
AlwNI CAGNNNCTG 1 cut(s) 1133
Ama87I CYCGRG 2 cut(s) 326, 1619
AoxI GGCC 4 cut(s) 150, 414, 480, 606
ApoI RAATTY 4 cut(s) 1002, 1428, 1730, 1799
AspLEI GCGC 2 cut(s) 457, 1484
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 3 cut(s) 17, 65, 349
AsuNHI GCTAGC 1 cut(s) 658
AvaI CYCGRG 2 cut(s) 326, 1619
BalI TGGCCA 1 cut(s) 152
BanII GRGCYC 1 cut(s) 477
BbsI GAAGAC 2 cut(s) 705, 1497
Bbv12I GWGCWC 2 cut(s) 477, 1650
BbvCI CCTCAGC 1 cut(s) 1134
BccI CCATC 7 cut(s) 340, 496, 874, 899, 1216, 1247, 1632
BciT130I CCWGG 1 cut(s) 38
BclI TGATCA 3 cut(s) 70, 352, 1423
BcoDI GTCTC 3 cut(s) 285, 544, 1595
BcuI ACTAGT 1 cut(s) 1072
BfaI CTAG 9 cut(s) 306, 659, 695, 719, 1073, 1196, 1526, 1778, 1804
BfoI RGCGCY 1 cut(s) 1485
BfrI CTTAAG 2 cut(s) 206, 1477
BglI GCCNNNNNGGC 1 cut(s) 605
BglII AGATCT 1 cut(s) 562
Bme1390I CCNGG 1 cut(s) 38
BmeT110I CYCGRG 2 cut(s) 326, 1619
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 1 cut(s) 1562
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 4 cut(s) 172, 634, 826, 1279
BmtI GCTAGC 1 cut(s) 662
BpiI GAAGAC 2 cut(s) 705, 1497
Bpu10I CCTNAGC 1 cut(s) 1134
BpuEI CTTGAG 2 cut(s) 461, 1710
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 1778
Bse3DI GCAATG 2 cut(s) 633, 1092
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 6 cut(s) 187, 325, 885, 910, 1179, 1294
BseLI CCNNNNNNNGG 1 cut(s) 1778
BseMI GCAATG 2 cut(s) 633, 1092
BseMII CTCAG 6 cut(s) 627, 750, 1089, 1125, 1491, 1590
BseRI GAGGAG 1 cut(s) 1713
Bsh1236I CGCG 4 cut(s) 315, 381, 455, 457
BshFI GGCC 4 cut(s) 152, 416, 482, 608
BsiHKAI GWGCWC 2 cut(s) 477, 1650
BsiHKCI CYCGRG 2 cut(s) 326, 1619
BsiSI CCGG 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 1778
BsmAI GTCTC 3 cut(s) 285, 544, 1595
BsnI GGCC 4 cut(s) 152, 416, 482, 608
BsoBI CYCGRG 2 cut(s) 326, 1619
Bsp1286I GDGCHC 2 cut(s) 477, 1650
Bsp143I GATC 9 cut(s) 70, 352, 562, 786, 898, 1330, 1423, 1591, 1624
BspACI CCGC 2 cut(s) 85, 494
BspANI GGCC 4 cut(s) 152, 416, 482, 608
BspCNI CTCAG 6 cut(s) 628, 751, 1090, 1126, 1492, 1591
BspFNI CGCG 4 cut(s) 315, 381, 455, 457
BspHI TCATGA 1 cut(s) 1333
BspLI GGNNCC 1 cut(s) 1562
BspOI GCTAGC 1 cut(s) 662
BspPI GGATC 1 cut(s) 1632
BspQI GCTCTTC 2 cut(s) 231, 534
BspTI CTTAAG 2 cut(s) 206, 1477
BsrDI GCAATG 2 cut(s) 633, 1092
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 9 cut(s) 70, 352, 562, 786, 898, 1330, 1423, 1591, 1624
BssNAI GTATAC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 333
Bst1107I GTATAC 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 296, 1470
Bst6I CTCTTC 4 cut(s) 231, 534, 861, 1332
BstAFI CTTAAG 2 cut(s) 206, 1477
BstAPI GCANNNNNTGC 2 cut(s) 182, 391
BstC8I GCNNGC 4 cut(s) 198, 383, 459, 660
BstDEI CTNAG 8 cut(s) 636, 759, 1098, 1134, 1454, 1500, 1599, 1682
BstF5I GGATG 6 cut(s) 187, 325, 885, 910, 1179, 1294
BstFNI CGCG 4 cut(s) 315, 381, 455, 457
BstH2I RGCGCY 1 cut(s) 1485
BstHHI GCGC 2 cut(s) 457, 1484
BstKTI GATC 9 cut(s) 73, 355, 565, 789, 901, 1333, 1426, 1594, 1627
BstMAI GTCTC 3 cut(s) 285, 544, 1595
BstMBI GATC 9 cut(s) 70, 352, 562, 786, 898, 1330, 1423, 1591, 1624
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstUI CGCG 4 cut(s) 315, 381, 455, 457
BstV2I GAAGAC 2 cut(s) 705, 1497
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 4 cut(s) 152, 416, 482, 608
BtgZI GCGATG 1 cut(s) 1651
BtsCI GGATG 6 cut(s) 187, 325, 885, 910, 1179, 1294
Cac8I GCNNGC 4 cut(s) 198, 383, 459, 660
CaiI CAGNNNCTG 1 cut(s) 1133
CciI TCATGA 1 cut(s) 1333
CfoI GCGC 2 cut(s) 457, 1484
Cfr13I GGNCC 1 cut(s) 481
CseI GACGC 1 cut(s) 710
Csp6I GTAC 5 cut(s) 226, 283, 763, 860, 1787
CviAII CATG 6 cut(s) 439, 520, 583, 1162, 1334, 1718
CviQI GTAC 5 cut(s) 226, 283, 763, 860, 1787
DdeI CTNAG 8 cut(s) 636, 759, 1098, 1134, 1454, 1500, 1599, 1682
DpnI GATC 9 cut(s) 72, 354, 564, 788, 900, 1332, 1425, 1593, 1626
DpnII GATC 9 cut(s) 70, 352, 562, 786, 898, 1330, 1423, 1591, 1624
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 4 cut(s) 231, 534, 861, 1332
EarI CTCTTC 4 cut(s) 231, 534, 861, 1332
Ecl136II GAGCTC 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 477
Eco32I GATATC 1 cut(s) 1715
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 3 cut(s) 872, 1164, 1314
Eco88I CYCGRG 2 cut(s) 326, 1619
EcoICRI GAGCTC 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 36
EcoRV GATATC 1 cut(s) 1715
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 477
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 6 cut(s) 442, 523, 586, 1165, 1337, 1721
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 660, 692
FatI CATG 6 cut(s) 438, 519, 582, 1161, 1333, 1717
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 3 cut(s) 70, 352, 1423
FblI GTMKAC 2 cut(s) 136, 1465
FokI GGATG 6 cut(s) 194, 332, 892, 917, 1186, 1301
FriOI GRGCYC 1 cut(s) 477
FspBI CTAG 9 cut(s) 306, 659, 695, 719, 1073, 1196, 1526, 1778, 1804
GlaI GCGC 2 cut(s) 456, 1483
HaeII RGCGCY 1 cut(s) 1485
HaeIII GGCC 4 cut(s) 152, 416, 482, 608
HapII CCGG 1 cut(s) 76
HgaI GACGC 1 cut(s) 710
HhaI GCGC 2 cut(s) 457, 1484
Hin1II CATG 6 cut(s) 442, 523, 586, 1165, 1337, 1721
Hin6I GCGC 2 cut(s) 455, 1482
HinP1I GCGC 2 cut(s) 455, 1482
HincII GTYRAC 1 cut(s) 1466
HindII GTYRAC 1 cut(s) 1466
HindIII AAGCTT 2 cut(s) 1296, 1474
HinfI GANTC 9 cut(s) 29, 310, 329, 467, 739, 917, 937, 1094, 1617
HpaII CCGG 1 cut(s) 76
HphI GGTGA 3 cut(s) 17, 65, 349
Hpy166II GTNNAC 3 cut(s) 137, 228, 1466
Hpy188III TCNNGA 7 cut(s) 728, 902, 1286, 1334, 1558, 1727, 1742
Hpy8I GTNNAC 3 cut(s) 137, 228, 1466
HpyCH4III ACNGT 2 cut(s) 296, 1470
HpyCH4IV ACGT 1 cut(s) 396
HpyF3I CTNAG 8 cut(s) 636, 759, 1098, 1134, 1454, 1500, 1599, 1682
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 6 cut(s) 442, 523, 586, 1165, 1337, 1721
HspAI GCGC 2 cut(s) 455, 1482
Ksp22I TGATCA 3 cut(s) 70, 352, 1423
Kzo9I GATC 9 cut(s) 70, 352, 562, 786, 898, 1330, 1423, 1591, 1624
LguI GCTCTTC 2 cut(s) 231, 534
LmnI GCTCC 7 cut(s) 523, 688, 750, 1247, 1522, 1702, 1726
LweI GCATC 4 cut(s) 172, 634, 826, 1279
MaeI CTAG 9 cut(s) 306, 659, 695, 719, 1073, 1196, 1526, 1778, 1804
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 3 cut(s) 918, 1017, 1579
MalI GATC 9 cut(s) 72, 354, 564, 788, 900, 1332, 1425, 1593, 1626
MboI GATC 9 cut(s) 70, 352, 562, 786, 898, 1330, 1423, 1591, 1624
MfeI CAATTG 2 cut(s) 24, 167
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 2 cut(s) 477, 1650
MlsI TGGCCA 1 cut(s) 152
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 4 cut(s) 304, 338, 926, 1611
MmeI TCCRAC 2 cut(s) 714, 1485
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MseI TTAA 7 cut(s) 207, 678, 777, 944, 1238, 1478, 1791
MslI CAYNNNNRTG 2 cut(s) 101, 770
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 2 cut(s) 1133, 1142
MspCI CTTAAG 2 cut(s) 206, 1477
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 38
MunI CAATTG 2 cut(s) 24, 167
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 4 cut(s) 315, 381, 455, 457
NdeII GATC 9 cut(s) 70, 352, 562, 786, 898, 1330, 1423, 1591, 1624
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 6 cut(s) 442, 523, 586, 1165, 1337, 1721
NlaIV GGNNCC 1 cut(s) 1562
NmeAIII GCCGAG 4 cut(s) 397, 451, 634, 673
NmuCI GTSAC 1 cut(s) 918
PaeR7I CTCGAG 2 cut(s) 326, 1619
PagI TCATGA 1 cut(s) 1333
PciSI GCTCTTC 2 cut(s) 231, 534
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PfeI GAWTC 5 cut(s) 29, 467, 739, 937, 1094
PleI GAGTC 4 cut(s) 304, 337, 925, 1611
PpsI GAGTC 4 cut(s) 304, 337, 925, 1611
PsiI TTATAA 1 cut(s) 1370
Psp124BI GAGCTC 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 1562
PspPI GGNCC 1 cut(s) 481
PspXI VCTCGAGB 2 cut(s) 326, 1619
PstNI CAGNNNCTG 1 cut(s) 1133
PsuI RGATCY 1 cut(s) 562
PvuII CAGCTG 2 cut(s) 1133, 1142
RsaI GTAC 5 cut(s) 227, 284, 764, 861, 1788
RsaNI GTAC 5 cut(s) 226, 283, 763, 860, 1787
RseI CAYNNNNRTG 2 cut(s) 101, 770
SacI GAGCTC 1 cut(s) 477
SalI GTCGAC 1 cut(s) 1464
SapI GCTCTTC 2 cut(s) 231, 534
SaqAI TTAA 7 cut(s) 207, 678, 777, 944, 1238, 1478, 1791
Sau3AI GATC 9 cut(s) 70, 352, 562, 786, 898, 1330, 1423, 1591, 1624
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 4 cut(s) 304, 338, 926, 1611
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 477, 1650
SfaNI GCATC 4 cut(s) 172, 634, 826, 1279
Sfr274I CTCGAG 2 cut(s) 326, 1619
SlaI CTCGAG 2 cut(s) 326, 1619
SmiMI CAYNNNNRTG 2 cut(s) 101, 770
SmlI CTYRAG 6 cut(s) 206, 326, 476, 1477, 1619, 1725
SmoI CTYRAG 6 cut(s) 206, 326, 476, 1477, 1619, 1725
SpeI ACTAGT 1 cut(s) 1072
SsiI CCGC 2 cut(s) 85, 494
SspMI CTAG 9 cut(s) 306, 659, 695, 719, 1073, 1196, 1526, 1778, 1804
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 296, 1470
TaiI ACGT 1 cut(s) 399
TaqI TCGA 4 cut(s) 327, 897, 1465, 1620
TatI WGTACW 3 cut(s) 225, 282, 762
TfiI GAWTC 5 cut(s) 29, 467, 739, 937, 1094
Tru1I TTAA 7 cut(s) 207, 678, 777, 944, 1238, 1478, 1791
Tru9I TTAA 7 cut(s) 207, 678, 777, 944, 1238, 1478, 1791
TseFI GTSAC 1 cut(s) 918
Tsp45I GTSAC 1 cut(s) 918
TspDTI ATGAA 9 cut(s) 336, 571, 816, 984, 1059, 1178, 1290, 1350, 1767
Vha464I CTTAAG 2 cut(s) 206, 1477
XapI RAATTY 4 cut(s) 1002, 1428, 1730, 1799
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XhoI CTCGAG 2 cut(s) 326, 1619
XmiI GTMKAC 2 cut(s) 136, 1465
XspI CTAG 9 cut(s) 306, 659, 695, 719, 1073, 1196, 1526, 1778, 1804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.