Rroxscaffold_3G00271400

Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015628
Physical Location & Seq
Reverse (-)
63745545 .. 63747045
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271400.1

Sequence Viewer

Length: 1485 bp
ATGAATACATACGAGACTGTAAAAGAGGAACTCGAGTCCAAGGTGAAGGAGATGGCTGATCAGCTTTCGGAAACTGCCAAGCTACGTGAGCAACTTATGCACGTTTTTAGCGAGTTGAAGGCCACACAAGCCGAGCTGTTTAGCATGGAAACTGACCTCGCGCGTGCCAGAGATTCAGAGCTCAAGGCCCTAACACAAGCGGAACTGATGGAGAGTGCTTTCATCATGGAGCAAGAAAGGACAGAAGAGCTTGTGAGACAGGTTGCAGATCTCAATGACGCGATATTGATGTCAAAAGATGCTGCCATTGAGGCAGAGAATGACAAGTTAGCAATGTTATCTGAGAAAGATGCCGAGATTGAGCTAGCTACACAAGCTGCTCTTAAAGCACAGAAGCAGCTAGAAGACGCAAGAATACAAACACTAGCAGTTCAGGAGTTGGAGAATCAGCTCCTTTCCAAGTCTGAGTACATTGAAATGCTTAAATATGAGATCAAAGATGCAAATGAACAACTTGTTTTGTCCAAGAAGGCTGCTTCTGATGCTATTGATAATCTGAAGCTGGTACAAGAAGAGTTGGAAGGGATGGAAAGAAAGAACTTCGATCAGGAAGGTTTGATTGAGTCACTTGAAATGGAATTGAATCAGTTAAAACAAGAGATAATAAATGCTAATGAAGTGGCTAATCACTTGAAGGTTGAAGTTGAAATTCTAACCAGCGAGTTACAGGAGGCAACAAGTGAGATTGATGAAATCAAGCAGAGGGAAAACAATGCACTAGTTGCGATAGCAATGCTGGAATCTGAGCTGCATAGAGGAAGGTCAAAAATTGCAGCAGCTGAGGCAGCTGAAGCAAGAAAGGAGAACATGAAATCTGGGATGTATCTTGCAATTCAGCAACTAGCAATAGAAGCCGAAACTGCCAAGATGGAAAACAGAATGTTAAAACAAGGAGCAGATGGGGTAGAGGAAGAAGCTGATGAACAATATCAGGATGCTGAAGCTTCCGAAATTGAAGAACTCAATGTTGAAGAAGATCATGAAGAGAGAAAAGAACAGGATAATGGACAACTTATAACAGTTTCGTTGAAGGAATATGAATGCTTGATTGAGAAGGCAGAGAAGGCTGATCAAATTCGTGAACTTAGTTTTGGTCGACAGTCAAGCTTAAGCGCCACAGAAGATAAGTCTGAGTTGGAAAGGTTGAGGAAGGAGCTAGAGGCCGCTTTGGAAAAAGTAGTGCAATTCAGGAACCGAGCAGAACAGGCAGTTACGAGGGCTGATCTTGCTGAGACAGCTAAAGCAGGACTCGAGGATCAGATAAGGCGATGGAGAGAGCACAGGCAAAAGAGAAAGGCTGCTCTTATTGCACTTAGGGAGGTATCTGCTCCAAAAGAATATGGATATCATGCTCCTCAAGAATTTAGCCTTCCTGAATACAATGAAATACAAAAAGGAAAATCCCCCACTAGGTCAGGTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

494

Amino Acids

56.22

Weight (kDa)

4.65

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 21 - 336 9.6e-10 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14430
malus_domestica MD06G1198500.v1.1 MD14G1206000.v1.1
prunus_persica Prupe.5G199300_v2.0.a1 Prupe.5G199300_v2.0.a1
pyrus_communis pycom14g17040
rosa_chinensis RchiOBHm_Chr7g0182231
rosa_laevigata RLG00000005138
rosa_multiflora Rmu_sc0000003.1_g000012
rosa_roxburghii Rroxscaffold_3G00271400
rosa_rugosa Rorug06G0446300
rosa_samantha Rh7AG049300 Rh7BG049400 Rh7CG050700 Rh7DG048600
rosa_wichuraiana Rw7G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1076
AccI GTMKAC 1 cut(s) 1156
AccII CGCG 3 cut(s) 161, 163, 281
AciI CCGC 2 cut(s) 200, 1224
AclWI GGATC 1 cut(s) 1323
AcsI RAATTY 3 cut(s) 708, 1134, 1421
AcuI CTGAAG 3 cut(s) 578, 870, 1020
AfaI GTAC 3 cut(s) 470, 567, 1480
AfiI CCNNNNNNNGG 1 cut(s) 1470
AflII CTTAAG 1 cut(s) 1168
AhlI ACTAGT 1 cut(s) 778
AjuI GAANNNNNNNTTGG 2 cut(s) 1134, 1166
Alw21I GWGCWC 2 cut(s) 183, 1341
Alw26I GTCTC 3 cut(s) 8, 250, 1286
AlwI GGATC 1 cut(s) 1323
AlwNI CAGNNNCTG 1 cut(s) 839
Ama87I CYCGRG 2 cut(s) 32, 1310
AoxI GGCC 3 cut(s) 120, 186, 1221
ApeKI GCWGC 9 cut(s) 302, 377, 397, 533, 808, 833, 836, 845, 1358
ApoI RAATTY 3 cut(s) 708, 1134, 1421
AspLEI GCGC 2 cut(s) 163, 1175
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 55
AsuNHI GCTAGC 1 cut(s) 364
AvaI CYCGRG 2 cut(s) 32, 1310
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 2 cut(s) 183, 1341
BbvCI CCTCAGC 1 cut(s) 840
BbvI GCAGC 9 cut(s) 289, 364, 409, 520, 795, 845, 848, 857, 1345
BccI CCATC 6 cut(s) 46, 202, 580, 922, 953, 1323
BcgI CGANNNNNNTGC 2 cut(s) 775, 809
BclI TGATCA 2 cut(s) 58, 1129
BcoDI GTCTC 3 cut(s) 8, 250, 1286
BcuI ACTAGT 1 cut(s) 778
BfaI CTAG 7 cut(s) 365, 401, 425, 779, 902, 1217, 1470
BfoI RGCGCY 1 cut(s) 1176
BfrI CTTAAG 1 cut(s) 1168
BglI GCCNNNNNGGC 1 cut(s) 311
BglII AGATCT 1 cut(s) 268
BmeT110I CYCGRG 2 cut(s) 32, 1310
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 1253
BmsI GCATC 5 cut(s) 289, 340, 490, 532, 985
BmtI GCTAGC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 840
BpuEI CTTGAG 2 cut(s) 167, 1401
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 1470
Bse3DI GCAATG 2 cut(s) 339, 798
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 3 cut(s) 591, 885, 1000
BseLI CCNNNNNNNGG 1 cut(s) 1470
BseMI GCAATG 2 cut(s) 339, 798
BseMII CTCAG 6 cut(s) 333, 456, 795, 831, 1182, 1281
BseRI GAGGAG 1 cut(s) 1404
BseXI GCAGC 9 cut(s) 289, 364, 409, 520, 795, 845, 848, 857, 1345
Bsh1236I CGCG 3 cut(s) 161, 163, 281
BshFI GGCC 3 cut(s) 122, 188, 1223
BsiHKAI GWGCWC 2 cut(s) 183, 1341
BsiHKCI CYCGRG 2 cut(s) 32, 1310
BslI CCNNNNNNNGG 1 cut(s) 1470
BsmAI GTCTC 3 cut(s) 8, 250, 1286
BsmI GAATGC 1 cut(s) 1106
BsnI GGCC 3 cut(s) 122, 188, 1223
BsoBI CYCGRG 2 cut(s) 32, 1310
Bsp1286I GDGCHC 2 cut(s) 183, 1341
Bsp143I GATC 8 cut(s) 58, 268, 492, 604, 1036, 1129, 1282, 1315
BspACI CCGC 2 cut(s) 200, 1224
BspANI GGCC 3 cut(s) 122, 188, 1223
BspCNI CTCAG 6 cut(s) 334, 457, 796, 832, 1183, 1282
BspFNI CGCG 3 cut(s) 161, 163, 281
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 1 cut(s) 1253
BspOI GCTAGC 1 cut(s) 368
BspPI GGATC 1 cut(s) 1323
BspQI GCTCTTC 1 cut(s) 240
BspTI CTTAAG 1 cut(s) 1168
BsrDI GCAATG 2 cut(s) 339, 798
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 8 cut(s) 58, 268, 492, 604, 1036, 1129, 1282, 1315
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 3 cut(s) 19, 1081, 1161
Bst6I CTCTTC 3 cut(s) 240, 567, 1038
BstAFI CTTAAG 1 cut(s) 1168
BstAPI GCANNNNNTGC 2 cut(s) 97, 782
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 165, 366
BstDEI CTNAG 8 cut(s) 342, 465, 804, 840, 1145, 1191, 1290, 1373
BstF5I GGATG 3 cut(s) 591, 885, 1000
BstFNI CGCG 3 cut(s) 161, 163, 281
BstH2I RGCGCY 1 cut(s) 1176
BstHHI GCGC 2 cut(s) 163, 1175
BstKTI GATC 8 cut(s) 61, 271, 495, 607, 1039, 1132, 1285, 1318
BstMAI GTCTC 3 cut(s) 8, 250, 1286
BstMBI GATC 8 cut(s) 58, 268, 492, 604, 1036, 1129, 1282, 1315
BstUI CGCG 3 cut(s) 161, 163, 281
BstV1I GCAGC 9 cut(s) 289, 364, 409, 520, 795, 845, 848, 857, 1345
BstV2I GAAGAC 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 3 cut(s) 122, 188, 1223
BtgZI GCGATG 1 cut(s) 1342
BtsCI GGATG 3 cut(s) 591, 885, 1000
Cac8I GCNNGC 2 cut(s) 165, 366
CaiI CAGNNNCTG 1 cut(s) 839
CciI TCATGA 1 cut(s) 1039
CfoI GCGC 2 cut(s) 163, 1175
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 2 cut(s) 287, 416
Csp6I GTAC 3 cut(s) 469, 566, 1479
CviAII CATG 5 cut(s) 145, 226, 868, 1040, 1409
CviQI GTAC 3 cut(s) 469, 566, 1479
DdeI CTNAG 8 cut(s) 342, 465, 804, 840, 1145, 1191, 1290, 1373
DpnI GATC 8 cut(s) 60, 270, 494, 606, 1038, 1131, 1284, 1317
DpnII GATC 8 cut(s) 58, 268, 492, 604, 1036, 1129, 1282, 1315
Eam1104I CTCTTC 3 cut(s) 240, 567, 1038
EarI CTCTTC 3 cut(s) 240, 567, 1038
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 1406
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 3 cut(s) 578, 870, 1020
Eco88I CYCGRG 2 cut(s) 32, 1310
EcoICRI GAGCTC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 187
EcoRV GATATC 1 cut(s) 1406
EcoT14I CCWWGG 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 5 cut(s) 148, 229, 871, 1043, 1412
FalI AAGNNNNNCTT 2 cut(s) 366, 398
FatI CATG 5 cut(s) 144, 225, 867, 1039, 1408
FbaI TGATCA 2 cut(s) 58, 1129
FblI GTMKAC 1 cut(s) 1156
FokI GGATG 3 cut(s) 598, 892, 1007
FriOI GRGCYC 1 cut(s) 183
FspBI CTAG 7 cut(s) 365, 401, 425, 779, 902, 1217, 1470
GlaI GCGC 2 cut(s) 162, 1174
HaeII RGCGCY 1 cut(s) 1176
HaeIII GGCC 3 cut(s) 122, 188, 1223
HgaI GACGC 2 cut(s) 287, 416
HhaI GCGC 2 cut(s) 163, 1175
Hin1II CATG 5 cut(s) 148, 229, 871, 1043, 1412
Hin6I GCGC 2 cut(s) 161, 1173
HinP1I GCGC 2 cut(s) 161, 1173
HincII GTYRAC 1 cut(s) 1157
HindII GTYRAC 1 cut(s) 1157
HindIII AAGCTT 2 cut(s) 1002, 1165
HinfI GANTC 7 cut(s) 35, 173, 445, 623, 643, 800, 1308
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 2 cut(s) 1142, 1157
Hpy188III TCNNGA 8 cut(s) 434, 608, 992, 1040, 1139, 1249, 1418, 1433
Hpy8I GTNNAC 2 cut(s) 1142, 1157
HpyCH4III ACNGT 3 cut(s) 19, 1081, 1161
HpyCH4IV ACGT 2 cut(s) 85, 102
HpyCH4V TGCA 9 cut(s) 100, 266, 503, 776, 811, 833, 890, 1243, 1370
HpyF3I CTNAG 8 cut(s) 342, 465, 804, 840, 1145, 1191, 1290, 1373
HpySE526I ACGT 2 cut(s) 85, 102
Hsp92II CATG 5 cut(s) 148, 229, 871, 1043, 1412
HspAI GCGC 2 cut(s) 161, 1173
Ksp22I TGATCA 2 cut(s) 58, 1129
Kzo9I GATC 8 cut(s) 58, 268, 492, 604, 1036, 1129, 1282, 1315
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 6 cut(s) 229, 456, 953, 1213, 1393, 1417
Lsp1109I GCAGC 9 cut(s) 289, 364, 409, 520, 795, 845, 848, 857, 1345
LweI GCATC 5 cut(s) 289, 340, 490, 532, 985
MaeI CTAG 7 cut(s) 365, 401, 425, 779, 902, 1217, 1470
MaeII ACGT 2 cut(s) 85, 102
MaeIII GTNAC 3 cut(s) 624, 723, 1270
MalI GATC 8 cut(s) 60, 270, 494, 606, 1038, 1131, 1284, 1317
MboI GATC 8 cut(s) 58, 268, 492, 604, 1036, 1129, 1282, 1315
MboII GAAGA 9 cut(s) 257, 416, 584, 983, 1028, 1043, 1046, 1055, 1193
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 2 cut(s) 183, 1341
MluCI AATT 8 cut(s) 638, 708, 828, 891, 1011, 1134, 1244, 1421
MlyI GAGTC 3 cut(s) 44, 632, 1302
MmeI TCCRAC 3 cut(s) 420, 558, 1176
MseI TTAA 6 cut(s) 384, 483, 650, 944, 1169, 1483
MslI CAYNNNNRTG 1 cut(s) 476
MspA1I CMGCKG 2 cut(s) 839, 848
MspCI CTTAAG 1 cut(s) 1168
Mva1269I GAATGC 1 cut(s) 1106
MvnI CGCG 3 cut(s) 161, 163, 281
NdeII GATC 8 cut(s) 58, 268, 492, 604, 1036, 1129, 1282, 1315
NheI GCTAGC 1 cut(s) 364
NlaIII CATG 5 cut(s) 148, 229, 871, 1043, 1412
NlaIV GGNNCC 1 cut(s) 1253
NmeAIII GCCGAG 2 cut(s) 157, 379
NmuCI GTSAC 1 cut(s) 624
PaeR7I CTCGAG 2 cut(s) 32, 1310
PagI TCATGA 1 cut(s) 1039
PciSI GCTCTTC 1 cut(s) 240
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 1106
PfeI GAWTC 4 cut(s) 173, 445, 643, 800
PleI GAGTC 3 cut(s) 43, 631, 1302
PpsI GAGTC 3 cut(s) 43, 631, 1302
Ppu21I YACGTR 1 cut(s) 86
PsiI TTATAA 1 cut(s) 1076
Psp124BI GAGCTC 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 1253
PspPI GGNCC 1 cut(s) 187
PspXI VCTCGAGB 2 cut(s) 32, 1310
PstNI CAGNNNCTG 1 cut(s) 839
PsuI RGATCY 1 cut(s) 268
PvuII CAGCTG 2 cut(s) 839, 848
RsaI GTAC 3 cut(s) 470, 567, 1480
RsaNI GTAC 3 cut(s) 469, 566, 1479
RseI CAYNNNNRTG 1 cut(s) 476
SacI GAGCTC 1 cut(s) 183
SalI GTCGAC 1 cut(s) 1155
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 6 cut(s) 384, 483, 650, 944, 1169, 1483
Sau3AI GATC 8 cut(s) 58, 268, 492, 604, 1036, 1129, 1282, 1315
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 3 cut(s) 44, 632, 1302
SduI GDGCHC 2 cut(s) 183, 1341
SfaNI GCATC 5 cut(s) 289, 340, 490, 532, 985
Sfr274I CTCGAG 2 cut(s) 32, 1310
SlaI CTCGAG 2 cut(s) 32, 1310
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 5 cut(s) 32, 182, 1168, 1310, 1416
SmoI CTYRAG 5 cut(s) 32, 182, 1168, 1310, 1416
SpeI ACTAGT 1 cut(s) 778
Sse9I AATT 8 cut(s) 638, 708, 828, 891, 1011, 1134, 1244, 1421
SsiI CCGC 2 cut(s) 200, 1224
SspMI CTAG 7 cut(s) 365, 401, 425, 779, 902, 1217, 1470
SstI GAGCTC 1 cut(s) 183
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 3 cut(s) 19, 1081, 1161
TaiI ACGT 2 cut(s) 88, 105
TaqI TCGA 4 cut(s) 33, 603, 1156, 1311
TasI AATT 8 cut(s) 638, 708, 828, 891, 1011, 1134, 1244, 1421
TatI WGTACW 1 cut(s) 468
TauI GCSGC 1 cut(s) 1226
TfiI GAWTC 4 cut(s) 173, 445, 643, 800
Tru1I TTAA 6 cut(s) 384, 483, 650, 944, 1169, 1483
Tru9I TTAA 6 cut(s) 384, 483, 650, 944, 1169, 1483
TseFI GTSAC 1 cut(s) 624
TseI GCWGC 9 cut(s) 302, 377, 397, 533, 808, 833, 836, 845, 1358
Tsp45I GTSAC 1 cut(s) 624
Vha464I CTTAAG 1 cut(s) 1168
XapI RAATTY 3 cut(s) 708, 1134, 1421
XhoI CTCGAG 2 cut(s) 32, 1310
XmiI GTMKAC 1 cut(s) 1156
XspI CTAG 7 cut(s) 365, 401, 425, 779, 902, 1217, 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.