Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0019271

Physical Location & Seq

Genomic Coordinates Forward (+)

34721766 .. 34722089

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1214500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGGATGTGAAGTCGTCGACCGAACCAACACGAAAGCCATCTTACTTGACATGATTTCGGGTGCCCTAGACATGTCAGCGACTGCGATTGTTTGGACTCTAGCCGAACCCTTGAGGCATCCTAGGGTTCTGAAGTTTCTCCAACGAGGGCTCCATACCGTGATCGGAATGGATCCAACGGTGGAGGGGAGCCATTTGCCGAATTTGGACTACTTGAACAAGGTTGTCAAAGAGAGCGTTCGGTTTCATCCGGTTGCACCATTGCTGATTCCACATGCATGCATCCATGGGGGACGTCACAGTTGGTGGATATTAGATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

108

Amino Acids

11.91

Weight (kDa)

7.05

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	7 - 95	3.5e-17	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019271)

Species	Orthologous Gene IDs
malus_domestica	MD06G1214500.v1.1
pyrus_communis	pycom06g19110
rosa_chinensis	RchiOBHm_Chr1g0359891 RchiOBHm_Chr1g0359921
rosa_multiflora	Rmu_sc0035715.1_g000001 Rmu_sc0038988.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061990
rosa_samantha	Rh1AG287700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	298
AccB1I	GGYRCC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	18
AclWI	GGATC	2 cut(s)	167, 180
AcsI	RAATTY	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	295
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	217
AlwI	GGATC	2 cut(s)	167, 180
AlwNI	CAGNNNCTG	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	202
AspA2I	CCTAGG	1 cut(s)	122
AvrII	CCTAGG	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	153
BccI	CCATC	1 cut(s)	47
BfaI	CTAG	4 cut(s)	68, 101, 123, 322
BlnI	CCTAGG	1 cut(s)	122
BmiI	GGNNCC	4 cut(s)	64, 152, 174, 191
BmsI	GCATC	3 cut(s)	127, 291, 307
BpuEI	CTTGAG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	122, 286
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse3DI	GCAATG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	122, 286
BseGI	GGATG	4 cut(s)	11, 118, 247, 282
BseMI	GCAATG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	67
Bsh1285I	CGRYCG	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	306
Bsp1286I	GDGCHC	2 cut(s)	67, 153
Bsp143I	GATC	2 cut(s)	162, 172
Bsp19I	CCATGG	1 cut(s)	286
BspLI	GGNNCC	4 cut(s)	64, 152, 174, 191
BspPI	GGATC	2 cut(s)	167, 180
BspT107I	GGYRCC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	122, 286
BssMI	GATC	2 cut(s)	162, 172
BssNI	GRCGYC	1 cut(s)	295
BssT1I	CCWWGG	2 cut(s)	122, 286
Bst4CI	ACNGT	3 cut(s)	160, 181, 302
BstACI	GRCGYC	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	280
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	4 cut(s)	11, 118, 247, 282
BstKTI	GATC	2 cut(s)	165, 175
BstMBI	GATC	2 cut(s)	162, 172
BstMCI	CGRYCG	1 cut(s)	22
BstNSI	RCATGY	3 cut(s)	76, 278, 282
BstSLI	GKGCMC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	4 cut(s)	11, 118, 247, 282
Cac8I	GCNNGC	1 cut(s)	280
CaiI	CAGNNNCTG	1 cut(s)	83
CviAII	CATG	5 cut(s)	52, 73, 275, 279, 287
CviJI	RGCY	4 cut(s)	38, 104, 151, 192
CviKI_1	RGCY	4 cut(s)	38, 104, 151, 192
DpnI	GATC	2 cut(s)	164, 174
DpnII	GATC	2 cut(s)	162, 172
Eco130I	CCWWGG	2 cut(s)	122, 286
Eco24I	GRGCYC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	152
EcoT14I	CCWWGG	2 cut(s)	122, 286
EcoT22I	ATGCAT	2 cut(s)	280, 284
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	2 cut(s)	122, 286
FaeI	CATG	5 cut(s)	55, 76, 278, 282, 290
FaiI	YATR	6 cut(s)	53, 74, 156, 276, 280, 288
FaqI	GGGAC	1 cut(s)	306
FatI	CATG	5 cut(s)	51, 72, 274, 278, 286
FblI	GTMKAC	1 cut(s)	18
FokI	GGATG	4 cut(s)	18, 105, 234, 269
FriOI	GRGCYC	1 cut(s)	153
FspBI	CTAG	4 cut(s)	68, 101, 123, 322
HapII	CCGG	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	5 cut(s)	55, 76, 278, 282, 290
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	97, 268
HpaII	CCGG	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	132, 167
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	20
HpyCH4III	ACNGT	3 cut(s)	160, 181, 302
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	3 cut(s)	257, 278, 282
HpySE526I	ACGT	1 cut(s)	295
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	5 cut(s)	55, 76, 278, 282, 290
Kzo9I	GATC	2 cut(s)	162, 172
LmnI	GCTCC	2 cut(s)	156, 189
LpnPI	CCDG	1 cut(s)	264
LweI	GCATC	3 cut(s)	127, 291, 307
MaeI	CTAG	4 cut(s)	68, 101, 123, 322
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	164, 174
MboI	GATC	2 cut(s)	162, 172
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	2 cut(s)	67, 153
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	2 cut(s)	166, 200
MnlI	CCTC	3 cut(s)	108, 140, 178
Mph1103I	ATGCAT	2 cut(s)	280, 284
MslI	CAYNNNNRTG	1 cut(s)	277
MspI	CCGG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	2 cut(s)	162, 172
NlaIII	CATG	5 cut(s)	55, 76, 278, 282, 290
NlaIV	GGNNCC	4 cut(s)	64, 152, 174, 191
NmuCI	GTSAC	1 cut(s)	296
NsiI	ATGCAT	2 cut(s)	280, 284
NspI	RCATGY	3 cut(s)	76, 278, 282
PaeI	GCATGC	1 cut(s)	282
PciI	ACATGT	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PscI	ACATGT	1 cut(s)	72
PspN4I	GGNNCC	4 cut(s)	64, 152, 174, 191
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	277
SalI	GTCGAC	1 cut(s)	17
Sau3AI	GATC	2 cut(s)	162, 172
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	2 cut(s)	67, 153
SetI	ASST	2 cut(s)	225, 298
SfaNI	GCATC	3 cut(s)	127, 291, 307
SmiMI	CAYNNNNRTG	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SphI	GCATGC	1 cut(s)	282
Sse9I	AATT	1 cut(s)	202
SspMI	CTAG	4 cut(s)	68, 101, 123, 322
StyI	CCWWGG	2 cut(s)	122, 286
TaaI	ACNGT	3 cut(s)	160, 181, 302
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	18
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	236
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	3 cut(s)	76, 278, 282
XmaJI	CCTAGG	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	4 cut(s)	68, 101, 123, 322
ZraI	GACGTC	1 cut(s)	296
Zsp2I	ATGCAT	2 cut(s)	280, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.