Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019271

Physical Location & Seq

Genomic Coordinates Forward (+)

84025181 .. 84038172

Gene Structure 12992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAGCGGGCATTAGCGGAGCTCATCAATCATCCGATGGTGCTCGAGAAAGCAATGGAGGAGATCGATAGCGTAGTTGGGAATGGACAAATAGTGGAAGAATCAGATTGTCCAAAACTTCCATACATCCAAGCTATCATAGAAGAAACATTTAGGCTACACCCACCCAAAGCTCTCAGTCTCATAGAGCTGACCGCCTTAGCTTGTAATCATTTTCTGGTGTCTGCAGGTGTCTGGAAAAATCAATCCATTGATCACCTTGTGATGCTAGGATATATACCCCCACACAATGTTCCAAAGATTCGCAGCTGCGACATTGGTGAATCACGTAGTAATCTTCACCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009717 GO:0009987 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0018130 GO:0019438 GO:0019748 GO:0033770 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0046287 GO:0046483 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00830 ko00943 ko00980 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00830 map00943 map00980 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

116

Amino Acids

12.96

Weight (kDa)

5.61

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 59	9.9e-15	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019271)

Species	Orthologous Gene IDs
malus_domestica	MD06G1214500.v1.1
pyrus_communis	pycom06g19110
rosa_chinensis	RchiOBHm_Chr1g0359891 RchiOBHm_Chr1g0359921
rosa_multiflora	Rmu_sc0035715.1_g000001 Rmu_sc0038988.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061990
rosa_samantha	Rh1AG287700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	218
AccBSI	CCGCTC	1 cut(s)	7
AciI	CCGC	3 cut(s)	7, 17, 195
AdeI	CACNNNGTG	1 cut(s)	262
AluBI	AGCT	6 cut(s)	22, 134, 173, 190, 203, 309
AluI	AGCT	6 cut(s)	22, 134, 173, 190, 203, 309
Alw21I	GWGCWC	2 cut(s)	24, 45
Alw26I	GTCTC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	44
ApeKI	GCWGC	2 cut(s)	306, 309
AsuHPI	GGTGA	3 cut(s)	248, 332, 332
AvaI	CYCGRG	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	2 cut(s)	24, 45
BbvI	GCAGC	2 cut(s)	296, 318
BccI	CCATC	1 cut(s)	31
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	218
BisI	GCNGC	2 cut(s)	307, 310
BlsI	GCNGC	2 cut(s)	308, 311
BmeT110I	CYCGRG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	199
Bsa29I	ATCGAT	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	60
BseCI	ATCGAT	1 cut(s)	66
BseGI	GGATG	2 cut(s)	31, 126
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	296, 318
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	24, 45
BsiHKCI	CYCGRG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	24, 45
Bsp143I	GATC	2 cut(s)	63, 253
BspACI	CCGC	3 cut(s)	7, 17, 195
BspCNI	CTCAG	1 cut(s)	189
BspDI	ATCGAT	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	60
BssMI	GATC	2 cut(s)	63, 253
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	176, 199
BstF5I	GGATG	2 cut(s)	31, 126
BstKTI	GATC	2 cut(s)	66, 256
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	63, 253
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	296, 318
Bsu15I	ATCGAT	1 cut(s)	66
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	31, 126
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	66
CviJI	RGCY	7 cut(s)	22, 134, 157, 173, 190, 203, 309
CviKI_1	RGCY	7 cut(s)	22, 134, 157, 173, 190, 203, 309
DdeI	CTNAG	2 cut(s)	176, 199
DpnI	GATC	2 cut(s)	65, 255
DpnII	GATC	2 cut(s)	63, 253
DraIII	CACNNNGTG	1 cut(s)	262
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	24
FaiI	YATR	5 cut(s)	124, 140, 185, 276, 278
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	307, 310
FokI	GGATG	2 cut(s)	18, 113
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	307, 310
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	2 cut(s)	307, 310
HinfI	GANTC	3 cut(s)	101, 301, 323
HphI	GGTGA	3 cut(s)	248, 332, 332
Hpy188I	TCNGA	2 cut(s)	36, 106
Hpy188III	TCNNGA	2 cut(s)	46, 235
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	176, 199
HpySE526I	ACGT	1 cut(s)	328
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	63, 253
LmnI	GCTCC	2 cut(s)	4, 19
LpnPI	CCDG	3 cut(s)	203, 213, 220
Lsp1109I	GCAGC	2 cut(s)	296, 318
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	328
MalI	GATC	2 cut(s)	65, 255
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	2 cut(s)	63, 253
MboII	GAAGA	3 cut(s)	110, 155, 329
MhlI	GDGCHC	2 cut(s)	24, 45
MnlI	CCTC	1 cut(s)	52
MspA1I	CMGCKG	1 cut(s)	309
NdeII	GATC	2 cut(s)	63, 253
PaeR7I	CTCGAG	1 cut(s)	44
PaqCI	CACCTGC	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	101, 301, 323
PkrI	GCNGC	2 cut(s)	308, 311
Ppu21I	YACGTR	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	24
SatI	GCNGC	2 cut(s)	307, 310
Sau3AI	GATC	2 cut(s)	63, 253
SduI	GDGCHC	2 cut(s)	24, 45
SetI	ASST	9 cut(s)	24, 136, 175, 192, 205, 232, 261, 311, 331
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	225
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SsiI	CCGC	3 cut(s)	7, 17, 195
SspMI	CTAG	1 cut(s)	269
SstI	GAGCTC	1 cut(s)	24
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	2 cut(s)	45, 66
TfiI	GAWTC	3 cut(s)	101, 301, 323
TseI	GCWGC	2 cut(s)	306, 309
XhoI	CTCGAG	1 cut(s)	44
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.