pycom06g19110

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0019271
Physical Location & Seq
Forward (+)
22611379 .. 22611657
279 bp
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UTR
Exon/CDS
Intron
pycom06g19110.1

Sequence Viewer

Length: 279 bp
ATGATTTCGGGTGCCCTAGACATGTCAGCGACTGCGATTGTTTGGATTCTAGCCGAACTCTTGAGGCATCCTAGGGCTATGAAGTTTCTCCAACGAGAGTTCCAAACCGTAATAGGAATGGATCGAACGGTGGAGGAGAGCGATTTGCCAAATTTGGACTACTTGAACAAGGTTGTCAAAGAGAGCGTTAGGTTTCATCTGGTTGCACCATTGCTGATTCCACATGCATCCATGAAGGACGTCACAGTTGGCCAAGATGTATTGTCAAAACGCTTTTAA

Protein Analysis

93

Amino Acids

10.45

Weight (kDa)

6.83

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 85 2e-21 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019271)

Species Orthologous Gene IDs
malus_domestica MD06G1214500.v1.1
pyrus_communis pycom06g19110
rosa_chinensis RchiOBHm_Chr1g0359891 RchiOBHm_Chr1g0359921
rosa_multiflora Rmu_sc0035715.1_g000001 Rmu_sc0038988.1_g000002
rosa_roxburghii Rroxscaffold_1G00061990
rosa_samantha Rh1AG287700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 11
AclWI GGATC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 151
AcyI GRCGYC 1 cut(s) 240
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 1 cut(s) 166
AlwI GGATC 1 cut(s) 129
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 151
AspA2I CCTAGG 1 cut(s) 71
AvrII CCTAGG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 16
BalI TGGCCA 1 cut(s) 252
BanI GGYRCC 1 cut(s) 11
BfaI CTAG 3 cut(s) 17, 50, 72
BlnI CCTAGG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 13
BmsI GCATC 2 cut(s) 76, 236
BpuEI CTTGAG 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 2 cut(s) 67, 227
BseMI GCAATG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 16
BshFI GGCC 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 11
BsnI GGCC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 121
BspANI GGCC 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 1 cut(s) 121
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 71
Bst4CI ACNGT 3 cut(s) 109, 130, 247
BstACI GRCGYC 1 cut(s) 240
BstF5I GGATG 2 cut(s) 67, 227
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstNSI RCATGY 2 cut(s) 25, 227
BstSLI GKGCMC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 252
BtsCI GGATG 2 cut(s) 67, 227
CaiI CAGNNNCTG 1 cut(s) 32
CviAII CATG 3 cut(s) 22, 224, 232
CviJI RGCY 3 cut(s) 53, 77, 252
CviKI_1 RGCY 3 cut(s) 53, 77, 252
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 71
EcoT22I ATGCAT 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 3 cut(s) 25, 227, 235
FaiI YATR 4 cut(s) 23, 80, 225, 233
FatI CATG 3 cut(s) 21, 223, 231
FokI GGATG 2 cut(s) 54, 214
FspBI CTAG 3 cut(s) 17, 50, 72
HaeIII GGCC 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 3 cut(s) 25, 227, 235
HinfI GANTC 2 cut(s) 46, 217
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 3 cut(s) 109, 130, 247
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 206, 227
HpySE526I ACGT 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 3 cut(s) 25, 227, 235
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 1 cut(s) 185
LweI GCATC 2 cut(s) 76, 236
MaeI CTAG 3 cut(s) 17, 50, 72
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 1 cut(s) 151
MluNI TGGCCA 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 2 cut(s) 57, 127
Mox20I TGGCCA 1 cut(s) 252
Mph1103I ATGCAT 1 cut(s) 229
MscI TGGCCA 1 cut(s) 252
MseI TTAA 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 252
NdeII GATC 1 cut(s) 121
NlaIII CATG 3 cut(s) 25, 227, 235
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 241
NsiI ATGCAT 1 cut(s) 229
NspI RCATGY 2 cut(s) 25, 227
PciI ACATGT 1 cut(s) 21
PfeI GAWTC 2 cut(s) 46, 217
PscI ACATGT 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 277
Sau3AI GATC 1 cut(s) 121
SduI GDGCHC 1 cut(s) 16
SetI ASST 3 cut(s) 174, 194, 243
SfaNI GCATC 2 cut(s) 76, 236
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 1 cut(s) 151
SspMI CTAG 3 cut(s) 17, 50, 72
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 3 cut(s) 109, 130, 247
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 151
TfiI GAWTC 2 cut(s) 46, 217
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 3 cut(s) 95, 185, 248
XapI RAATTY 1 cut(s) 151
XceI RCATGY 2 cut(s) 25, 227
XmaJI CCTAGG 1 cut(s) 71
XspI CTAG 3 cut(s) 17, 50, 72
ZraI GACGTC 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.