Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019271

Physical Location & Seq

Genomic Coordinates Reverse (-)

51655899 .. 51656171

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG287700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATAGCTGCAGCCACAGACACTTCTGCTGTGACCAACGAATGGGCAATGGCCGAGGTGATCAAGCATCCACGTGTCCTCCGTAAGATCCAAGAAGAGCTCGATTCAGTCGTTGGTCAACATAGAATGGTCAACGAATCAGACCTACCCCATCTTAACTATCTACACTGTGTCGTACGTGAAACCTTCCGCATGCATCCGGCGGACCCTTCCTCTAATTCTGTCGAAGAGAAGACGATAAAAAAGGTTGTGTGTGAGGAGGAAAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002933 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016053 GO:0016491 GO:0016705 GO:0016709 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0022607 GO:0030198 GO:0030258 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0042221 GO:0043062 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044550 GO:0045229 GO:0046394 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051791 GO:0051792 GO:0052722 GO:0055114 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0080110 GO:0085029 GO:0090567 GO:0099402 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR p450

Protein Analysis

90

Amino Acids

10.26

Weight (kDa)

5.28

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 71	3.7e-20	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019271)

Species	Orthologous Gene IDs
malus_domestica	MD06G1214500.v1.1
pyrus_communis	pycom06g19110
rosa_chinensis	RchiOBHm_Chr1g0359891 RchiOBHm_Chr1g0359921
rosa_multiflora	Rmu_sc0035715.1_g000001 Rmu_sc0038988.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061990
rosa_samantha	Rh1AG287700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	42
AciI	CCGC	2 cut(s)	190, 203
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	51
AcvI	CACGTG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	42
AflIII	ACRYGT	1 cut(s)	73
AluBI	AGCT	2 cut(s)	8, 100
AluI	AGCT	2 cut(s)	8, 100
Alw21I	GWGCWC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	8, 11
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	102
BbrPI	CACGTG	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	1 cut(s)	159
BclI	TGATCA	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	2 cut(s)	9, 12
BlsI	GCNGC	2 cut(s)	10, 13
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	207
BmsI	GCATC	2 cut(s)	76, 205
BpiI	GAAGAC	1 cut(s)	239
BsaAI	YACGTR	2 cut(s)	74, 179
BsaJI	CCNNGG	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	2 cut(s)	67, 196
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	200
BsiWI	CGTACG	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	42
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	60, 87
BspACI	CCGC	2 cut(s)	190, 203
BspANI	GGCC	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	207
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	82
BspQI	GCTCTTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	54
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	60, 87
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	2 cut(s)	90, 222
BstBAI	YACGTR	2 cut(s)	74, 179
BstC8I	GCNNGC	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	67, 196
BstKTI	GATC	2 cut(s)	63, 90
BstMBI	GATC	2 cut(s)	60, 87
BstNSI	RCATGY	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	67, 196
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	4 cut(s)	8, 14, 53, 100
CviKI_1	RGCY	4 cut(s)	8, 14, 53, 100
CviQI	GTAC	1 cut(s)	176
DpnI	GATC	2 cut(s)	62, 89
DpnII	GATC	2 cut(s)	60, 87
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	90, 222
EarI	CTCTTC	2 cut(s)	90, 222
EciI	GGCGGA	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	100
Eco72I	CACGTG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	196
FaiI	YATR	2 cut(s)	123, 194
FatI	CATG	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	9, 12
FokI	GGATG	2 cut(s)	54, 183
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	2 cut(s)	9, 12
GluI	GCNGC	2 cut(s)	9, 12
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	1 cut(s)	196
HincII	GTYRAC	2 cut(s)	119, 133
HindII	GTYRAC	2 cut(s)	119, 133
HinfI	GANTC	2 cut(s)	104, 137
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	119, 133
Hpy188I	TCNGA	1 cut(s)	142
Hpy8I	GTNNAC	2 cut(s)	119, 133
HpyAV	CCTTC	2 cut(s)	196, 219
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	2 cut(s)	73, 178
HpyCH4V	TGCA	2 cut(s)	11, 196
HpySE526I	ACGT	2 cut(s)	73, 178
Hsp92II	CATG	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	60, 87
LguI	GCTCTTC	1 cut(s)	90
LpnPI	CCDG	1 cut(s)	213
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	2 cut(s)	76, 205
MaeII	ACGT	2 cut(s)	73, 178
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	62, 89
MboI	GATC	2 cut(s)	60, 87
MboII	GAAGA	3 cut(s)	107, 239, 244
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	1 cut(s)	217
MnlI	CCTC	5 cut(s)	49, 89, 223, 250, 253
Mph1103I	ATGCAT	1 cut(s)	198
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	60, 87
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	207
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	198
NspI	RCATGY	1 cut(s)	196
PaeI	GCATGC	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	2 cut(s)	79, 108
PfeI	GAWTC	2 cut(s)	104, 137
Pfl23II	CGTACG	1 cut(s)	175
PflMI	CCANNNNNTGG	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	10, 13
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
Ppu21I	YACGTR	2 cut(s)	74, 179
Psp124BI	GAGCTC	1 cut(s)	102
PspCI	CACGTG	1 cut(s)	74
PspLI	CGTACG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	9, 12
Sau3AI	GATC	2 cut(s)	60, 87
Sau96I	GGNCC	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	8 cut(s)	10, 60, 76, 102, 147, 181, 188, 249
SfaNI	GCATC	2 cut(s)	76, 205
SfcI	CTRYAG	1 cut(s)	9
SgeI	CNNG	9 cut(s)	67, 76, 84, 86, 104, 113, 191, 205, 212
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	72
SphI	GCATGC	1 cut(s)	196
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	2 cut(s)	190, 203
SstI	GAGCTC	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	2 cut(s)	76, 181
TaqI	TCGA	2 cut(s)	102, 225
TasI	AATT	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	104, 137
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	2 cut(s)	8, 11
Tsp45I	GTSAC	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	205
XceI	RCATGY	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.