Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035715.1

Orthogroup ID

OG0019271

Physical Location & Seq

Genomic Coordinates Forward (+)

1926 .. 4181

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035715.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atggcagcttctgatacttcagccaaatcaattgtttggagtctttccgagctctcgaggcatccaaggatcatgaagaatctccaagaagagctccaaactgcggttggcatggaccgaattgtggaagagtctgatttgccaaagttggattactttagtatggtggtcaaggagagctcgagactacacccatacaaggcaaagaaccttgccactgcaactaagtttgccagacgactattggagacgaaccccacagttgagagtcaggcaaagttacccatgcaagtgcaggcggcagagaagaatatgactgatgcttctcaactgaactatgacttcagaaatccatttgtggtgggggcaacaaatgtaccaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0031090 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0055114 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

128

Amino Acids

14.38

Weight (kDa)

7.99

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019271)

Species	Orthologous Gene IDs
malus_domestica	MD06G1214500.v1.1
pyrus_communis	pycom06g19110
rosa_chinensis	RchiOBHm_Chr1g0359891 RchiOBHm_Chr1g0359921
rosa_multiflora	Rmu_sc0035715.1_g000001 Rmu_sc0038988.1_g000002
rosa_roxburghii	Rroxscaffold_1G00061990
rosa_samantha	Rh1AG287700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	104, 299
AclWI	GGATC	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	328
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	3 cut(s)	103, 124, 199
AluBI	AGCT	4 cut(s)	8, 52, 94, 180
AluI	AGCT	4 cut(s)	8, 52, 94, 180
Alw21I	GWGCWC	3 cut(s)	54, 96, 182
Alw26I	GTCTC	2 cut(s)	178, 242
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	2 cut(s)	55, 181
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	115
AvaI	CYCGRG	2 cut(s)	55, 181
AvaII	GGWCC	1 cut(s)	115
BaeI	ACNNNNGTAYC	1 cut(s)	360
BanII	GRGCYC	3 cut(s)	54, 96, 182
Bbv12I	GWGCWC	3 cut(s)	54, 96, 182
BbvI	GCAGC	1 cut(s)	17
BcoDI	GTCTC	2 cut(s)	178, 242
BisI	GCNGC	2 cut(s)	6, 300
BlsI	GCNGC	2 cut(s)	7, 301
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	2 cut(s)	55, 181
BmgT120I	GGNCC	1 cut(s)	115
BmsI	GCATC	2 cut(s)	70, 310
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 124, 199
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	3 cut(s)	103, 124, 199
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	314
BsiHKAI	GWGCWC	3 cut(s)	54, 96, 182
BsiHKCI	CYCGRG	2 cut(s)	55, 181
BslI	CCNNNNNNNGG	3 cut(s)	103, 124, 199
BsmAI	GTCTC	2 cut(s)	178, 242
BsmBI	CGTCTC	1 cut(s)	242
BsoBI	CYCGRG	2 cut(s)	55, 181
Bsp1286I	GDGCHC	3 cut(s)	54, 96, 182
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	2 cut(s)	104, 299
BspHI	TCATGA	1 cut(s)	72
BspPI	GGATC	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	84, 123
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	2 cut(s)	178, 242
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	3 cut(s)	73, 112, 286
CviJI	RGCY	5 cut(s)	8, 23, 52, 94, 180
CviKI_1	RGCY	5 cut(s)	8, 23, 52, 94, 180
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	84, 123
EarI	CTCTTC	2 cut(s)	84, 123
Ecl136II	GAGCTC	3 cut(s)	52, 94, 180
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	3 cut(s)	54, 96, 182
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	3 cut(s)	52, 94, 180
Eco57I	CTGAAG	1 cut(s)	328
Eco88I	CYCGRG	2 cut(s)	55, 181
EcoICRI	GAGCTC	3 cut(s)	52, 94, 180
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	3 cut(s)	54, 96, 182
ErhI	CCWWGG	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	3 cut(s)	76, 115, 289
FaiI	YATR	7 cut(s)	74, 113, 164, 196, 287, 314, 339
FatI	CATG	3 cut(s)	72, 111, 285
Fnu4HI	GCNGC	2 cut(s)	6, 300
FokI	GGATG	1 cut(s)	48
FriOI	GRGCYC	3 cut(s)	54, 96, 182
Fsp4HI	GCNGC	2 cut(s)	6, 300
GluI	GCNGC	2 cut(s)	6, 300
Hin1II	CATG	3 cut(s)	76, 115, 289
HinfI	GANTC	4 cut(s)	40, 79, 131, 268
Hpy188I	TCNGA	4 cut(s)	13, 49, 136, 347
Hpy188III	TCNNGA	3 cut(s)	55, 73, 183
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	3 cut(s)	221, 289, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	76, 115, 289
Kzo9I	GATC	1 cut(s)	69
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	3 cut(s)	247, 257, 281
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	70, 310
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	4 cut(s)	88, 101, 140, 319
MfeI	CAATTG	1 cut(s)	30
MhlI	GDGCHC	3 cut(s)	54, 96, 182
MluCI	AATT	3 cut(s)	30, 120, 381
MlyI	GAGTC	3 cut(s)	49, 140, 277
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	30
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	3 cut(s)	76, 115, 289
PaeR7I	CTCGAG	2 cut(s)	55, 181
PagI	TCATGA	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	7, 301
PleI	GAGTC	3 cut(s)	48, 139, 276
PpsI	GAGTC	3 cut(s)	48, 139, 276
Psp124BI	GAGCTC	3 cut(s)	54, 96, 182
PspPI	GGNCC	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	290
SacI	GAGCTC	3 cut(s)	54, 96, 182
SapI	GCTCTTC	1 cut(s)	84
SatI	GCNGC	2 cut(s)	6, 300
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	3 cut(s)	49, 140, 277
SduI	GDGCHC	3 cut(s)	54, 96, 182
SetI	ASST	5 cut(s)	10, 54, 96, 182, 213
SfaNI	GCATC	2 cut(s)	70, 310
Sfr274I	CTCGAG	2 cut(s)	55, 181
SinI	GGWCC	1 cut(s)	115
SlaI	CTCGAG	2 cut(s)	55, 181
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	55, 181
SmoI	CTYRAG	2 cut(s)	55, 181
Sse9I	AATT	3 cut(s)	30, 120, 381
SsiI	CCGC	2 cut(s)	104, 299
SstI	GAGCTC	3 cut(s)	54, 96, 182
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	2 cut(s)	56, 182
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	3 cut(s)	30, 120, 381
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	79
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	2 cut(s)	104, 241
XhoI	CTCGAG	2 cut(s)	55, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.