Rmu_sc0038988.1_g000002

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038988.1
OG0019271
Physical Location & Seq
Reverse (-)
4276 .. 6205
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038988.1_g000002.1.cds

Sequence Viewer

Length: 594 bp
atgtccattcgtctaggcaatgttcctaccataatagtctcctccccaaaagccgcagaacaattcctcaaagctcacgacactaatttcgctagccggcccaaaatccaagcctcggagtacataccctacgacataaagagcatggccttttccaaatatggtcaatattggcgccatgtaaggaagctctgtatgcaacaacatttttgtccggcgacaatggagggtttcacgcctctgagaaaggaagagctggagcgctgggatgataggtttgatttgaaagccgttattgaggaaacgttttacttggcaggggccttcaatatattagattttgttccttccctttctgcacttgatatatattcagcttctgatacttcagccaaatcaattgtttggagtctttccgagctctcgaggcatccaaggatcatgaagaatctccaagaagagctccaaactgcggttggcatggaccgaattgtggaagagtctgatttgccaaagttggattacttgagtatggtggtcaaagagagctcgagactacacccagttcgttgcactatttcttgtcccatgtga

Protein Analysis

197

Amino Acids

22.61

Weight (kDa)

6.52

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019271)

Species Orthologous Gene IDs
malus_domestica MD06G1214500.v1.1
pyrus_communis pycom06g19110
rosa_chinensis RchiOBHm_Chr1g0359891 RchiOBHm_Chr1g0359921
rosa_multiflora Rmu_sc0035715.1_g000001 Rmu_sc0038988.1_g000002
rosa_roxburghii Rroxscaffold_1G00061990
rosa_samantha Rh1AG287700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 174
AciI CCGC 2 cut(s) 54, 473
AclI AACGTT 1 cut(s) 305
AclWI GGATC 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 1 cut(s) 122
AfeI AGCGCT 1 cut(s) 263
AfiI CCNNNNNNNGG 3 cut(s) 115, 472, 493
AgsI TTSAA 2 cut(s) 286, 328
AluBI AGCT 7 cut(s) 74, 190, 256, 377, 421, 463, 549
AluI AGCT 7 cut(s) 74, 190, 256, 377, 421, 463, 549
Alw21I GWGCWC 3 cut(s) 423, 465, 551
Alw26I GTCTC 2 cut(s) 43, 547
AlwI GGATC 1 cut(s) 446
AlwNI CAGNNNCTG 1 cut(s) 380
Ama87I CYCGRG 2 cut(s) 424, 550
Aor51HI AGCGCT 1 cut(s) 263
AoxI GGCC 3 cut(s) 98, 147, 321
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspLEI GCGC 2 cut(s) 177, 264
AspS9I GGNCC 3 cut(s) 99, 321, 484
AsuNHI GCTAGC 1 cut(s) 92
AvaI CYCGRG 2 cut(s) 424, 550
AvaII GGWCC 1 cut(s) 484
BanI GGYRCC 1 cut(s) 174
BanII GRGCYC 3 cut(s) 423, 465, 551
Bbv12I GWGCWC 3 cut(s) 423, 465, 551
BceAI ACGGC 1 cut(s) 275
BcoDI GTCTC 2 cut(s) 43, 547
BfaI CTAG 2 cut(s) 14, 93
BfoI RGCGCY 2 cut(s) 178, 265
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 484
BmeT110I CYCGRG 2 cut(s) 424, 550
BmgT120I GGNCC 3 cut(s) 99, 321, 484
BmiI GGNNCC 2 cut(s) 176, 322
BmrI ACTGGG 1 cut(s) 557
BmsI GCATC 1 cut(s) 439
BmtI GCTAGC 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 557
BpmI CTGGAG 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 547
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 114, 434
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 472, 493
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 563
Bse3DI GCAATG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 114, 434
BseGI GGATG 2 cut(s) 274, 430
BseLI CCNNNNNNNGG 3 cut(s) 115, 472, 493
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 563
BseRI GAGGAG 1 cut(s) 31
BseYI CCCAGC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 3 cut(s) 100, 149, 323
BshNI GGYRCC 1 cut(s) 174
BsiHKAI GWGCWC 3 cut(s) 423, 465, 551
BsiHKCI CYCGRG 2 cut(s) 424, 550
BsiSI CCGG 2 cut(s) 97, 215
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 3 cut(s) 115, 472, 493
BsmAI GTCTC 2 cut(s) 43, 547
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 3 cut(s) 100, 149, 323
BsoBI CYCGRG 2 cut(s) 424, 550
Bsp1286I GDGCHC 3 cut(s) 423, 465, 551
Bsp143I GATC 1 cut(s) 438
BspACI CCGC 2 cut(s) 54, 473
BspANI GGCC 3 cut(s) 100, 149, 323
BspCNI CTCAG 1 cut(s) 234
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 2 cut(s) 176, 322
BspOI GCTAGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 446
BspQI GCTCTTC 2 cut(s) 246, 453
BspT107I GGYRCC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 96
BsrI ACTGG 1 cut(s) 563
BssAI RCCGGY 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 114, 434
BssMI GATC 1 cut(s) 438
BssNI GRCGYC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 434
Bst6I CTCTTC 3 cut(s) 246, 453, 492
BstACI GRCGYC 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 94, 98
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 274, 430
BstH2I RGCGCY 2 cut(s) 178, 265
BstHHI GCGC 2 cut(s) 177, 264
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 2 cut(s) 43, 547
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 2 cut(s) 196, 427
BsuRI GGCC 3 cut(s) 100, 149, 323
BtsCI GGATG 2 cut(s) 274, 430
Cac8I GCNNGC 2 cut(s) 94, 98
CaiI CAGNNNCTG 1 cut(s) 380
CciI TCATGA 1 cut(s) 441
CfoI GCGC 2 cut(s) 177, 264
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 3 cut(s) 99, 321, 484
Csp6I GTAC 1 cut(s) 121
CviAII CATG 5 cut(s) 145, 179, 442, 481, 589
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 242
DinI GGCGCC 1 cut(s) 176
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
Eam1104I CTCTTC 3 cut(s) 246, 453, 492
EarI CTCTTC 3 cut(s) 246, 453, 492
Ecl136II GAGCTC 3 cut(s) 421, 463, 549
Eco130I CCWWGG 1 cut(s) 434
Eco24I GRGCYC 3 cut(s) 423, 465, 551
Eco47I GGWCC 1 cut(s) 484
Eco47III AGCGCT 1 cut(s) 263
Eco53kI GAGCTC 3 cut(s) 421, 463, 549
Eco57I CTGAAG 1 cut(s) 372
Eco88I CYCGRG 2 cut(s) 424, 550
EcoICRI GAGCTC 3 cut(s) 421, 463, 549
EcoO109I RGGNCCY 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 434
EcoT38I GRGCYC 3 cut(s) 423, 465, 551
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 434
FaeI CATG 5 cut(s) 148, 182, 445, 484, 592
FaqI GGGAC 1 cut(s) 570
FatI CATG 5 cut(s) 144, 178, 441, 480, 588
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 281, 417
FriOI GRGCYC 3 cut(s) 423, 465, 551
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 14, 93
GlaI GCGC 2 cut(s) 176, 263
GluI GCNGC 1 cut(s) 54
GsaI CCCAGC 1 cut(s) 268
GsuI CTGGAG 1 cut(s) 278
HaeII RGCGCY 2 cut(s) 178, 265
HaeIII GGCC 3 cut(s) 100, 149, 323
HapII CCGG 2 cut(s) 97, 215
HhaI GCGC 2 cut(s) 177, 264
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 5 cut(s) 148, 182, 445, 484, 592
Hin6I GCGC 2 cut(s) 175, 262
HinP1I GCGC 2 cut(s) 175, 262
HinfI GANTC 3 cut(s) 409, 448, 500
HpaII CCGG 2 cut(s) 97, 215
Hpy188I TCNGA 5 cut(s) 118, 243, 382, 418, 505
Hpy188III TCNNGA 4 cut(s) 77, 424, 442, 552
HpyAV CCTTC 2 cut(s) 334, 357
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 199, 359, 573
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 427
HpyF3I CTNAG 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 305
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 5 cut(s) 148, 182, 445, 484, 592
HspAI GCGC 2 cut(s) 175, 262
KasI GGCGCC 1 cut(s) 174
KroI GCCGGC 1 cut(s) 96
KroNI GCCGGC 1 cut(s) 98
Kzo9I GATC 1 cut(s) 438
LguI GCTCTTC 2 cut(s) 246, 453
LmnI GCTCC 2 cut(s) 259, 468
LpnPI CCDG 6 cut(s) 110, 228, 242, 250, 303, 576
LweI GCATC 1 cut(s) 439
MaeI CTAG 2 cut(s) 14, 93
MaeII ACGT 1 cut(s) 305
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 4 cut(s) 263, 457, 470, 509
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 3 cut(s) 423, 465, 551
MluCI AATT 4 cut(s) 62, 85, 399, 489
Mly113I GGCGCC 1 cut(s) 175
MlyI GAGTC 2 cut(s) 418, 509
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 7 cut(s) 52, 77, 124, 220, 249, 292, 420
MroNI GCCGGC 1 cut(s) 96
MspI CCGG 2 cut(s) 97, 215
MunI CAATTG 1 cut(s) 399
MwoI GCNNNNNNNGC 2 cut(s) 196, 427
NaeI GCCGGC 1 cut(s) 98
NarI GGCGCC 1 cut(s) 175
NdeII GATC 1 cut(s) 438
NgoMIV GCCGGC 1 cut(s) 96
NheI GCTAGC 1 cut(s) 92
NlaIII CATG 5 cut(s) 148, 182, 445, 484, 592
NlaIV GGNNCC 2 cut(s) 176, 322
PaeR7I CTCGAG 2 cut(s) 424, 550
PagI TCATGA 1 cut(s) 441
PciSI GCTCTTC 2 cut(s) 246, 453
PdiI GCCGGC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 448
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 2 cut(s) 417, 508
PluTI GGCGCC 1 cut(s) 178
PpsI GAGTC 2 cut(s) 417, 508
Psp124BI GAGCTC 3 cut(s) 423, 465, 551
Psp1406I AACGTT 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 176, 322
PspPI GGNCC 3 cut(s) 99, 321, 484
PstNI CAGNNNCTG 1 cut(s) 380
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SacI GAGCTC 3 cut(s) 423, 465, 551
SapI GCTCTTC 2 cut(s) 246, 453
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 3 cut(s) 99, 321, 484
SchI GAGTC 2 cut(s) 418, 509
SduI GDGCHC 3 cut(s) 423, 465, 551
SetI ASST 9 cut(s) 76, 192, 258, 278, 308, 379, 423, 465, 551
SfaNI GCATC 1 cut(s) 439
SfoI GGCGCC 1 cut(s) 176
Sfr274I CTCGAG 2 cut(s) 424, 550
SinI GGWCC 1 cut(s) 484
SlaI CTCGAG 2 cut(s) 424, 550
SmlI CTYRAG 3 cut(s) 424, 526, 550
SmoI CTYRAG 3 cut(s) 424, 526, 550
Sse9I AATT 4 cut(s) 62, 85, 399, 489
SsiI CCGC 2 cut(s) 54, 473
SspDI GGCGCC 1 cut(s) 174
SspI AATATT 1 cut(s) 170
SspMI CTAG 2 cut(s) 14, 93
SstI GAGCTC 3 cut(s) 423, 465, 551
StyI CCWWGG 1 cut(s) 434
TaiI ACGT 1 cut(s) 308
TaqI TCGA 2 cut(s) 425, 551
TaqII GACCGA 1 cut(s) 501
TasI AATT 4 cut(s) 62, 85, 399, 489
TatI WGTACW 1 cut(s) 120
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 448
TspDTI ATGAA 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XhoI CTCGAG 2 cut(s) 424, 550
XspI CTAG 2 cut(s) 14, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.