MD06G1235000.v1.1

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
36602365 .. 36605130
2766 bp
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UTR
Exon/CDS
Intron
MD06G1235000.v1.1.491

Sequence Viewer

Length: 1302 bp
ATGGGGAAGACCATGGCGGTGGGAGTACATTGCATCATCGCCTTGCTAATTCTGTCCGGTGCGGATCTAGTCAGGTCCGACGGGTCGGATCATCGGTACAAGGAAGGAGATTTTGTCCCTCTGTATGCCAACAAGGTTGGCCCGTTTCACAACCCCAGTGAAGCGTACGGATACTTTGATCTCCCATTCTGCTCACCAGATGCGGTGACAGAGAAGGGGGAAGCTCTTGGTGAAGTATTGAATGGGGATCGTTTAGTCAGTGCTCCTTACAAACTTGAGTTCCTAAGGCATAAAGATCCCGAAGTAGCTTGCAAGAAAACACTCACAAAGGAAGAAGTAGGCCGGTTCAGATCTGCTGTCAACAAGGACTATTACTTCCAGATGTATTATGATGACTTGCCCATTTGGGGTTTCATAGGGAAGGTTGACAAGGAAGGCAAAGACCCCCCGAGCGAGTACAAGACCTACCTTTATAAGCACATTCATTTTGATCTCTATTATAACAAGGACCGCGTGATTGAAGTCAATGTTCGAACAGATCCAAATGCACTGGCTGACCTTTCAGAGGATAAAGAAGTTGATGTTGAATTCATGTATACTGTGGAGTGGAAGGAAACAACCACTCCTTTCGATAAGAGGATGGATAAGTATGCTCAGTCCTCATCCTTGCCTCCTCTCGTCGATGCCTATGAATTATATACTACCACTCGGCGTCTACTCCCAAACCTTGAATATGCGAAAAAGCTAGCTGAACTGCTAAAAGAACTAGTGCAAGAAGGACTAAAACGCTTGAAAGGTGATCCTTCTGACGGTAACTGGTGTAAACGTAACGGGGACTGGTATAACTGTAGTAATCTTCCTACCGGTCGTCTTGTAACATCATTGAATCTCAGCAGCCGACGCTTGACTGGCCAATTTCCGGGCGCCATTAGGTCCATGGATGAGCTGCAGAAAATTGATTTTCACAACAACTGCATGTATGGAACTATTCCGGATTTCCTTGGCTCCTTGCCTAATCTAAAACTACTGAATTTGTCAAGGAACAGACTCACTGGATCCATACCTACCTCTCTTTTAAACAACAAAAACCTTACTTTGGACGTGAGAGAGAATTGTCTCGATGGAATGCCTTGCCGAGCAACGTCCTGTCCAGCCGTGAGAGCCGCGCGACAAACACCCCCTTCTCCTCCACCCCCTTCTCCTCCACCCCCTTCTCGTTCAGGAGGCAAGGAATGCAGTACTCACAAGCTACAGATGATACTCGGTGGCATATTTCTTTTTTATATCTTCAGTAACCAATAA

Protein Analysis

434

Amino Acids

48.94

Weight (kDa)

7.06

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 56 - 219 1.2e-38 Endomembrane protein 70
LRR_8 PF13855 292 - 350 1.3e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 474, 501
AccB1I GGYRCC 1 cut(s) 923
AccI GTMKAC 2 cut(s) 596, 715
AccII CGCG 3 cut(s) 513, 1166, 1168
AccIII TCCGGA 1 cut(s) 991
AciI CCGC 5 cut(s) 17, 62, 203, 511, 1164
AclWI GGATC 8 cut(s) 72, 96, 255, 290, 533, 794, 1050, 1063
AcoI YGGCCR 1 cut(s) 910
AcsI RAATTY 2 cut(s) 587, 1030
AcuI CTGAAG 1 cut(s) 1273
AcyI GRCGYC 2 cut(s) 712, 924
AfaI GTAC 5 cut(s) 27, 98, 167, 458, 1240
AfiI CCNNNNNNNGG 5 cut(s) 407, 565, 809, 919, 1096
AgeI ACCGGT 1 cut(s) 863
AgsI TTSAA 6 cut(s) 241, 521, 587, 731, 793, 886
AhlI ACTAGT 1 cut(s) 766
AjiI CACGTC 1 cut(s) 1102
AluBI AGCT 6 cut(s) 224, 308, 745, 749, 946, 1249
AluI AGCT 6 cut(s) 224, 308, 745, 749, 946, 1249
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 1121
AlwI GGATC 8 cut(s) 72, 96, 255, 290, 533, 794, 1050, 1063
Ama87I CYCGRG 1 cut(s) 448
Aor13HI TCCGGA 1 cut(s) 991
AoxI GGCC 3 cut(s) 139, 340, 910
ApeKI GCWGC 2 cut(s) 894, 946
ApoI RAATTY 2 cut(s) 587, 1030
AsiGI ACCGGT 1 cut(s) 863
AspLEI GCGC 2 cut(s) 926, 1168
AspS9I GGNCC 4 cut(s) 75, 140, 508, 933
AsuC2I CCSGG 1 cut(s) 921
AsuHPI GGTGA 4 cut(s) 186, 217, 242, 809
AsuII TTCGAA 1 cut(s) 532
AsuNHI GCTAGC 1 cut(s) 745
AvaI CYCGRG 1 cut(s) 448
AvaII GGWCC 3 cut(s) 75, 508, 933
AxyI CCTNAGG 1 cut(s) 284
BalI TGGCCA 1 cut(s) 912
BamHI GGATCC 1 cut(s) 1055
BanI GGYRCC 1 cut(s) 923
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 906, 933
BccI CCATC 2 cut(s) 634, 1115
BceAI ACGGC 1 cut(s) 1139
BciVI GTATCC 1 cut(s) 164
BcnI CCSGG 1 cut(s) 921
BcoDI GTCTC 1 cut(s) 1121
BcuI ACTAGT 1 cut(s) 766
BfaI CTAG 3 cut(s) 68, 746, 767
BfmI CTRYAG 3 cut(s) 847, 947, 1250
BfoI RGCGCY 1 cut(s) 927
BfuI GTATCC 1 cut(s) 164
BglII AGATCT 1 cut(s) 350
BisI GCNGC 3 cut(s) 895, 947, 1164
BlsI GCNGC 3 cut(s) 896, 948, 1165
BmcAI AGTACT 1 cut(s) 1240
Bme1390I CCNGG 1 cut(s) 921
Bme18I GGWCC 3 cut(s) 75, 508, 933
BmeT110I CYCGRG 1 cut(s) 448
BmgBI CACGTC 1 cut(s) 1102
BmgT120I GGNCC 4 cut(s) 75, 140, 508, 933
BmiI GGNNCC 3 cut(s) 925, 1006, 1057
BmrFI CCNGG 1 cut(s) 921
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 3 cut(s) 42, 190, 673
BmtI GCTAGC 1 cut(s) 749
BmuI ACTGGG 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 921
BsaHI GRCGYC 2 cut(s) 712, 924
BsaJI CCNNGG 3 cut(s) 12, 936, 1000
BsaWI WCCGGW 3 cut(s) 56, 863, 991
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 607, 637
Bsc4I CCNNNNNNNGG 5 cut(s) 407, 565, 809, 919, 1096
Bse118I RCCGGY 2 cut(s) 342, 863
Bse1I ACTGG 6 cut(s) 156, 555, 821, 842, 913, 1057
Bse21I CCTNAGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 28
BseAI TCCGGA 1 cut(s) 991
BseDI CCNNGG 3 cut(s) 12, 936, 1000
BseGI GGATG 3 cut(s) 645, 662, 946
BseLI CCNNNNNNNGG 5 cut(s) 407, 565, 809, 919, 1096
BseMI GCAATG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 668, 904
BseNI ACTGG 6 cut(s) 156, 555, 821, 842, 913, 1057
BseRI GAGGAG 3 cut(s) 663, 1176, 1191
BseXI GCAGC 2 cut(s) 906, 933
Bsh1236I CGCG 3 cut(s) 513, 1166, 1168
Bsh1285I CGRYCG 1 cut(s) 868
BshFI GGCC 3 cut(s) 141, 342, 912
BshNI GGYRCC 1 cut(s) 923
BshTI ACCGGT 1 cut(s) 863
BsiEI CGRYCG 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 5 cut(s) 57, 343, 864, 920, 992
BsiWI CGTACG 1 cut(s) 165
BslFI GGGAC 2 cut(s) 101, 848
BslI CCNNNNNNNGG 5 cut(s) 407, 565, 809, 919, 1096
BsmAI GTCTC 1 cut(s) 1121
BsmFI GGGAC 2 cut(s) 101, 848
BsmI GAATGC 2 cut(s) 1131, 1238
BsnI GGCC 3 cut(s) 141, 342, 912
BsoBI CYCGRG 1 cut(s) 448
Bsp119I TTCGAA 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 265
Bsp13I TCCGGA 1 cut(s) 991
Bsp19I CCATGG 2 cut(s) 12, 936
BspACI CCGC 5 cut(s) 17, 62, 203, 511, 1164
BspANI GGCC 3 cut(s) 141, 342, 912
BspCNI CTCAG 2 cut(s) 667, 903
BspEI TCCGGA 1 cut(s) 991
BspFNI CGCG 3 cut(s) 513, 1166, 1168
BspLI GGNNCC 3 cut(s) 925, 1006, 1057
BspMAI CTGCAG 1 cut(s) 951
BspOI GCTAGC 1 cut(s) 749
BspPI GGATC 8 cut(s) 72, 96, 255, 290, 533, 794, 1050, 1063
BspT104I TTCGAA 1 cut(s) 532
BspT107I GGYRCC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 28
BsrFI RCCGGY 2 cut(s) 342, 863
BsrI ACTGG 6 cut(s) 156, 555, 821, 842, 913, 1057
BssAI RCCGGY 2 cut(s) 342, 863
BssECI CCNNGG 3 cut(s) 12, 936, 1000
BssNAI GTATAC 1 cut(s) 597
BssNI GRCGYC 2 cut(s) 712, 924
BssT1I CCWWGG 3 cut(s) 12, 936, 1000
Bst1107I GTATAC 1 cut(s) 597
Bst4CI ACNGT 3 cut(s) 601, 812, 848
BstACI GRCGYC 2 cut(s) 712, 924
BstAPI GCANNNNNTGC 1 cut(s) 1233
BstBI TTCGAA 1 cut(s) 532
BstC8I GCNNGC 2 cut(s) 310, 747
BstDEI CTNAG 3 cut(s) 284, 654, 890
BstDSI CCRYGG 2 cut(s) 12, 936
BstENI CCTNNNNNAGG 1 cut(s) 563
BstF5I GGATG 3 cut(s) 645, 662, 946
BstFNI CGCG 3 cut(s) 513, 1166, 1168
BstH2I RGCGCY 1 cut(s) 927
BstHHI GCGC 2 cut(s) 926, 1168
BstMAI GTCTC 1 cut(s) 1121
BstMCI CGRYCG 1 cut(s) 868
BstMWI GCNNNNNNNGC 4 cut(s) 900, 909, 1160, 1233
BstNSI RCATGY 1 cut(s) 979
BstSCI CCNGG 1 cut(s) 919
BstSFI CTRYAG 3 cut(s) 847, 947, 1250
BstUI CGCG 3 cut(s) 513, 1166, 1168
BstV1I GCAGC 2 cut(s) 906, 933
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 5 cut(s) 64, 295, 350, 538, 1055
BstXI CCANNNNNNTGG 1 cut(s) 19
BstYI RGATCY 5 cut(s) 64, 295, 350, 538, 1055
BstZ17I GTATAC 1 cut(s) 597
Bsu36I CCTNAGG 1 cut(s) 284
BsuI GTATCC 1 cut(s) 164
BsuRI GGCC 3 cut(s) 141, 342, 912
BtgI CCRYGG 2 cut(s) 12, 936
BtgZI GCGATG 1 cut(s) 22
BtrI CACGTC 1 cut(s) 1102
BtsCI GGATG 3 cut(s) 645, 662, 946
BtsIMutI CAGTG 4 cut(s) 163, 265, 548, 1050
Cac8I GCNNGC 2 cut(s) 310, 747
CfoI GCGC 2 cut(s) 926, 1168
Cfr10I RCCGGY 2 cut(s) 342, 863
Cfr13I GGNCC 4 cut(s) 75, 140, 508, 933
CseI GACGC 2 cut(s) 701, 909
Csp6I GTAC 5 cut(s) 26, 97, 166, 457, 1239
CspAI ACCGGT 1 cut(s) 863
CviAII CATG 4 cut(s) 13, 592, 937, 976
CviQI GTAC 5 cut(s) 26, 97, 166, 457, 1239
DdeI CTNAG 3 cut(s) 284, 654, 890
DinI GGCGCC 1 cut(s) 925
DraI TTTAAA 1 cut(s) 1077
EaeI YGGCCR 1 cut(s) 910
Eco130I CCWWGG 3 cut(s) 12, 936, 1000
Eco47I GGWCC 3 cut(s) 75, 508, 933
Eco57I CTGAAG 1 cut(s) 1273
Eco81I CCTNAGG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 448
EcoNI CCTNNNNNAGG 1 cut(s) 563
EcoRI GAATTC 1 cut(s) 587
EcoT14I CCWWGG 3 cut(s) 12, 936, 1000
EgeI GGCGCC 1 cut(s) 925
EheI GGCGCC 1 cut(s) 925
ErhI CCWWGG 3 cut(s) 12, 936, 1000
FaeI CATG 4 cut(s) 16, 595, 940, 979
FaqI GGGAC 2 cut(s) 101, 848
FatI CATG 4 cut(s) 12, 591, 936, 975
FblI GTMKAC 2 cut(s) 596, 715
Fnu4HI GCNGC 3 cut(s) 895, 947, 1164
FokI GGATG 3 cut(s) 649, 652, 953
Fsp4HI GCNGC 3 cut(s) 895, 947, 1164
FspBI CTAG 3 cut(s) 68, 746, 767
GlaI GCGC 2 cut(s) 925, 1167
GluI GCNGC 3 cut(s) 895, 947, 1164
HaeII RGCGCY 1 cut(s) 927
HaeIII GGCC 3 cut(s) 141, 342, 912
HapII CCGG 5 cut(s) 57, 343, 864, 920, 992
HgaI GACGC 2 cut(s) 701, 909
HhaI GCGC 2 cut(s) 926, 1168
Hin1I GRCGYC 2 cut(s) 712, 924
Hin1II CATG 4 cut(s) 16, 595, 940, 979
Hin6I GCGC 2 cut(s) 924, 1166
HinP1I GCGC 2 cut(s) 924, 1166
HincII GTYRAC 2 cut(s) 361, 427
HindII GTYRAC 2 cut(s) 361, 427
HinfI GANTC 2 cut(s) 886, 1047
HpaII CCGG 5 cut(s) 57, 343, 864, 920, 992
HphI GGTGA 4 cut(s) 186, 217, 242, 809
Hpy166II GTNNAC 5 cut(s) 361, 427, 597, 716, 824
Hpy188I TCNGA 5 cut(s) 79, 88, 350, 565, 808
Hpy188III TCNNGA 5 cut(s) 299, 379, 992, 1118, 1221
Hpy8I GTNNAC 5 cut(s) 361, 427, 597, 716, 824
Hpy99I CGWCG 3 cut(s) 83, 683, 903
HpyCH4III ACNGT 3 cut(s) 601, 812, 848
HpyCH4IV ACGT 3 cut(s) 826, 1101, 1142
HpyCH4V TGCA 7 cut(s) 33, 312, 548, 772, 949, 975, 1236
HpyF10VI GCNNNNNNNGC 4 cut(s) 900, 909, 1160, 1233
HpyF3I CTNAG 3 cut(s) 284, 654, 890
HpySE526I ACGT 3 cut(s) 826, 1101, 1142
Hsp92I GRCGYC 2 cut(s) 712, 924
Hsp92II CATG 4 cut(s) 16, 595, 940, 979
HspAI GCGC 2 cut(s) 924, 1166
KasI GGCGCC 1 cut(s) 923
Kpn2I TCCGGA 1 cut(s) 991
LmnI GCTCC 2 cut(s) 268, 1010
Lsp1109I GCAGC 2 cut(s) 906, 933
LweI GCATC 3 cut(s) 42, 190, 673
MaeI CTAG 3 cut(s) 68, 746, 767
MaeII ACGT 3 cut(s) 826, 1101, 1142
MaeIII GTNAC 5 cut(s) 205, 812, 827, 874, 1292
MboII GAAGA 4 cut(s) 19, 344, 848, 1279
MflI RGATCY 5 cut(s) 64, 295, 350, 538, 1055
MhlI GDGCHC 1 cut(s) 265
MlsI TGGCCA 1 cut(s) 912
MluCI AATT 7 cut(s) 48, 587, 692, 914, 954, 1030, 1111
MluNI TGGCCA 1 cut(s) 912
Mly113I GGCGCC 1 cut(s) 924
MlyI GAGTC 1 cut(s) 1041
MmeI TCCRAC 2 cut(s) 66, 102
Mox20I TGGCCA 1 cut(s) 912
MroI TCCGGA 1 cut(s) 991
MscI TGGCCA 1 cut(s) 912
MseI TTAA 1 cut(s) 1076
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 912
MspI CCGG 5 cut(s) 57, 343, 864, 920, 992
MspR9I CCNGG 1 cut(s) 921
Mva1269I GAATGC 2 cut(s) 1131, 1238
MvnI CGCG 3 cut(s) 513, 1166, 1168
MwoI GCNNNNNNNGC 4 cut(s) 900, 909, 1160, 1233
NarI GGCGCC 1 cut(s) 924
NciI CCSGG 1 cut(s) 921
NcoI CCATGG 2 cut(s) 12, 936
NheI GCTAGC 1 cut(s) 745
NlaIII CATG 4 cut(s) 16, 595, 940, 979
NlaIV GGNNCC 3 cut(s) 925, 1006, 1057
NmeAIII GCCGAG 2 cut(s) 688, 1160
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 979
NspV TTCGAA 1 cut(s) 532
PctI GAATGC 2 cut(s) 1131, 1238
PfeI GAWTC 1 cut(s) 886
Pfl23II CGTACG 1 cut(s) 165
PinAI ACCGGT 1 cut(s) 863
PkrI GCNGC 3 cut(s) 896, 948, 1165
PleI GAGTC 1 cut(s) 1041
PluTI GGCGCC 1 cut(s) 927
PpsI GAGTC 1 cut(s) 1041
PsiI TTATAA 2 cut(s) 474, 501
PspLI CGTACG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 925, 1006, 1057
PspPI GGNCC 4 cut(s) 75, 140, 508, 933
PstI CTGCAG 1 cut(s) 951
PsuI RGATCY 5 cut(s) 64, 295, 350, 538, 1055
RsaI GTAC 5 cut(s) 27, 98, 167, 458, 1240
RsaNI GTAC 5 cut(s) 26, 97, 166, 457, 1239
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 1 cut(s) 1076
SatI GCNGC 3 cut(s) 895, 947, 1164
Sau96I GGNCC 4 cut(s) 75, 140, 508, 933
ScaI AGTACT 1 cut(s) 1240
SchI GAGTC 1 cut(s) 1041
ScrFI CCNGG 1 cut(s) 921
SduI GDGCHC 1 cut(s) 265
SfaNI GCATC 3 cut(s) 42, 190, 673
SfcI CTRYAG 3 cut(s) 847, 947, 1250
SfoI GGCGCC 1 cut(s) 925
SfuI TTCGAA 1 cut(s) 532
SinI GGWCC 3 cut(s) 75, 508, 933
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 766
Sse9I AATT 7 cut(s) 48, 587, 692, 914, 954, 1030, 1111
SsiI CCGC 5 cut(s) 17, 62, 203, 511, 1164
SspDI GGCGCC 1 cut(s) 923
SspMI CTAG 3 cut(s) 68, 746, 767
StyD4I CCNGG 1 cut(s) 919
StyI CCWWGG 3 cut(s) 12, 936, 1000
TaaI ACNGT 3 cut(s) 601, 812, 848
TaiI ACGT 3 cut(s) 829, 1104, 1145
TaqI TCGA 4 cut(s) 532, 630, 681, 1119
TasI AATT 7 cut(s) 48, 587, 692, 914, 954, 1030, 1111
TatI WGTACW 3 cut(s) 25, 456, 1238
TauI GCSGC 1 cut(s) 1166
TfiI GAWTC 1 cut(s) 886
Tru1I TTAA 1 cut(s) 1076
Tru9I TTAA 1 cut(s) 1076
TscAI CASTG 4 cut(s) 163, 265, 555, 1057
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 894, 946
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 4 cut(s) 403, 473, 580, 705
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 4 cut(s) 163, 265, 555, 1057
VpaK11BI GGWCC 3 cut(s) 75, 508, 933
XagI CCTNNNNNAGG 1 cut(s) 563
XapI RAATTY 2 cut(s) 587, 1030
XceI RCATGY 1 cut(s) 979
XcmI CCANNNNNNNNNTGG 1 cut(s) 934
XmiI GTMKAC 2 cut(s) 596, 715
XspI CTAG 3 cut(s) 68, 746, 767
ZrmI AGTACT 1 cut(s) 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.