Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000016.1

Orthogroup ID

OG0018882

Physical Location & Seq

Genomic Coordinates Forward (+)

10720 .. 14546

Gene Structure 3827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000016.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgagtaacctgaacaaattggactttgctccattgggaacaactggctctggatatcacaggtgggttcgtgatatccgccagcatctcaaggctgatagaatcctggatatgattctcgagcctagccaggacgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaggcgaaagccatcatcctaatgactcaagatatttttcgatacttgagatgtatgaaagatatgggcttgttctatccctacgaagagatgatggattcagacccatcacacaccagaaacgccgccaacgctggcctgcgttctctatccccattccaaaacgacatgtgttttggaaggttttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

128

Amino Acids

14.63

Weight (kDa)

6.27

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018882)

Species	Orthologous Gene IDs
malus_domestica	MD06G1235000.v1.1 MD06G1235200.v1.1
rosa_multiflora	Rmu_co8090820.1_g000001 Rmu_sc0000016.1_g000004 Rmu_sc0000112.1_g000027 Rmu_sc0009988.1_g000017 Rmu_sc0019843.1_g000001 Rmu_sc0040871.1_g000001 Rmu_ssc0000126.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	79, 321
AflIII	ACRYGT	1 cut(s)	363
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	105, 129
AluBI	AGCT	2 cut(s)	155, 161
AluI	AGCT	2 cut(s)	155, 161
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	179
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AvaI	CYCGRG	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	3 cut(s)	215, 283, 310
BciT130I	CCWGG	2 cut(s)	107, 131
BfaI	CTAG	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	180, 321
BlsI	GCNGC	2 cut(s)	181, 322
Bme1390I	CCNGG	2 cut(s)	107, 131
BmeT110I	CYCGRG	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	136
BmrFI	CCNGG	2 cut(s)	107, 131
BmsI	GCATC	1 cut(s)	94
BpuEI	CTTGAG	4 cut(s)	74, 141, 207, 262
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	107, 131
BseGI	GGATG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	191
BshFI	GGCC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	119
BsnI	GGCC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	119
BspACI	CCGC	2 cut(s)	79, 321
BspANI	GGCC	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	107, 131
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	4 cut(s)	83, 153, 331, 335
BstDEI	CTNAG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 176, 188, 197, 326
BstNI	CCWGG	2 cut(s)	107, 131
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	105, 129
BstV1I	GCAGC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	333
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	210
Cac8I	GCNNGC	4 cut(s)	83, 153, 331, 335
CviAII	CATG	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	68
Eco32I	GATATC	2 cut(s)	56, 76
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	105, 129
EcoRV	GATATC	2 cut(s)	56, 76
FaeI	CATG	1 cut(s)	367
FaiI	YATR	4 cut(s)	113, 251, 260, 365
FatI	CATG	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	180, 321
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	180, 321
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	2 cut(s)	180, 321
HaeIII	GGCC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	4 cut(s)	102, 115, 220, 293
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	4 cut(s)	51, 71, 119, 224
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 176, 188, 197, 326
HpyF3I	CTNAG	1 cut(s)	184
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	367
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	5
MboII	GAAGA	1 cut(s)	293
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	1 cut(s)	181
MslI	CAYNNNNRTG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	107, 131
MvaI	CCWGG	2 cut(s)	107, 131
MwoI	GCNNNNNNNGC	5 cut(s)	167, 176, 188, 197, 326
NlaIII	CATG	1 cut(s)	367
NspI	RCATGY	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	119
PciI	ACATGT	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	102, 115, 293
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	181, 322
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PscI	ACATGT	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	105, 129
PspGI	CCWGG	2 cut(s)	105, 129
RseI	CAYNNNNRTG	1 cut(s)	215
SatI	GCNGC	2 cut(s)	180, 321
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	107, 131
SetI	ASST	6 cut(s)	12, 65, 138, 157, 163, 380
SfaNI	GCATC	1 cut(s)	94
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	5 cut(s)	89, 119, 156, 222, 241
SmoI	CTYRAG	5 cut(s)	89, 119, 156, 222, 241
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	2 cut(s)	79, 321
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	105, 129
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	120, 235
TasI	AATT	1 cut(s)	17
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	3 cut(s)	102, 115, 293
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	266
XceI	RCATGY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.