Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009988.1

Orthogroup ID

OG0018882

Physical Location & Seq

Genomic Coordinates Reverse (-)

56434 .. 61229

Gene Structure 4796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009988.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgcgtcgactccagcctccgcatgtgaccctcccaatctgcacgccactgttccacgaccctcacgggttttcggtcatcttctcactacaccaccatcaccgtcgcactcagcaagtaatggaggacaaaacccagaggccggaaagccatccacttcataaaccgccaaccctcgaaagcaaggagacaggagctacccctaggcatcacacgcgctgcacgccgcctggcgcgtggaccaccgctgctccgccgtgttcggctgtcggattttcgaaattgtctcgtaggaagaaaaatgggggagagccacaacaacctccaccaccgcgcaatgacgtcgtcccccgctgcttatcaattgggtttggggataaagacttcttcttcctccacctccagcgaaatcagggaggctcgaggccacattctaagggccaccggctggaaggaccgccacagcaaggtctgcaccgccaaaggccccagggaccatcgcgtccggctcgcccccacaccgccattcaattctacgacgtgcaagacaggctcggatacgaccggcccagcaaggtcgtcgattggctcatcaagaaagccaaggcagcaatcgacgagctgtcgccgtggaacccgaactcaatttctgttcagacaacatcttcttccaacgatgccgatatccgccgcgcaggactggcagaacgcgagcctccatttctgaatagtggaggctccgagttctttgtctgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

252

Amino Acids

28.3

Weight (kDa)

10.02

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018882)

Species	Orthologous Gene IDs
malus_domestica	MD06G1235000.v1.1 MD06G1235200.v1.1
rosa_multiflora	Rmu_co8090820.1_g000001 Rmu_sc0000016.1_g000004 Rmu_sc0000112.1_g000027 Rmu_sc0009988.1_g000017 Rmu_sc0019843.1_g000001 Rmu_sc0040871.1_g000001 Rmu_ssc0000126.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	501
AatII	GACGTC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	448
AccI	GTMKAC	1 cut(s)	7
AccII	CGCG	6 cut(s)	217, 236, 334, 502, 693, 711
AcyI	GRCGYC	1 cut(s)	342
AfiI	CCNNNNNNNGG	3 cut(s)	142, 448, 467
AgsI	TTSAA	1 cut(s)	530
AhdI	GACNNNNNGTC	1 cut(s)	622
AjiI	CACGTC	1 cut(s)	541
AjnI	CCWGG	2 cut(s)	229, 489
AluBI	AGCT	2 cut(s)	197, 622
AluI	AGCT	2 cut(s)	197, 622
Alw26I	GTCTC	2 cut(s)	182, 291
Ama87I	CYCGRG	1 cut(s)	421
AoxI	GGCC	5 cut(s)	140, 425, 439, 485, 566
ApeKI	GCWGC	4 cut(s)	219, 248, 354, 608
AspA2I	CCTAGG	1 cut(s)	203
AspLEI	GCGC	4 cut(s)	219, 236, 336, 695
AspS9I	GGNCC	6 cut(s)	240, 439, 455, 486, 494, 567
AsuHPI	GGTGA	1 cut(s)	92
AsuII	TTCGAA	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	421
AvaII	GGWCC	3 cut(s)	240, 455, 494
AvrII	CCTAGG	1 cut(s)	203
BbvI	GCAGC	4 cut(s)	206, 235, 341, 620
BccI	CCATC	3 cut(s)	105, 159, 505
BceAI	ACGGC	2 cut(s)	241, 613
BcgI	CGANNNNNNTGC	4 cut(s)	325, 359, 562, 596
BciT130I	CCWGG	2 cut(s)	231, 491
BciVI	GTATCC	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	182, 291
BfaI	CTAG	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	6 cut(s)	220, 227, 249, 355, 609, 691
BlnI	CCTAGG	1 cut(s)	203
BlsI	GCNGC	6 cut(s)	221, 228, 250, 356, 610, 692
Bme1390I	CCNGG	2 cut(s)	231, 491
Bme18I	GGWCC	3 cut(s)	240, 455, 494
BmeRI	GACNNNNNGTC	1 cut(s)	622
BmeT110I	CYCGRG	1 cut(s)	421
BmgBI	CACGTC	1 cut(s)	541
BmgT120I	GGNCC	6 cut(s)	240, 439, 455, 486, 494, 567
BmiI	GGNNCC	4 cut(s)	488, 495, 635, 739
BmrFI	CCNGG	2 cut(s)	231, 491
BmsI	GCATC	2 cut(s)	217, 667
BpmI	CTGGAG	1 cut(s)	386
Bpu14I	TTCGAA	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	5 cut(s)	203, 489, 490, 603, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 448, 467
Bse118I	RCCGGY	2 cut(s)	444, 564
Bse1I	ACTGG	1 cut(s)	705
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	231, 491
BseDI	CCNNGG	5 cut(s)	203, 489, 490, 603, 629
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	3 cut(s)	142, 448, 467
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	705
BseXI	GCAGC	4 cut(s)	206, 235, 341, 620
BseYI	CCCAGC	1 cut(s)	569
BsgI	GTGCAG	3 cut(s)	25, 205, 458
Bsh1236I	CGCG	6 cut(s)	217, 236, 334, 502, 693, 711
Bsh1285I	CGRYCG	1 cut(s)	565
BshFI	GGCC	5 cut(s)	142, 427, 441, 487, 568
BsiEI	CGRYCG	1 cut(s)	565
BsiHKCI	CYCGRG	1 cut(s)	421
BsiSI	CCGG	4 cut(s)	143, 445, 506, 565
BslFI	GGGAC	2 cut(s)	332, 507
BslI	CCNNNNNNNGG	3 cut(s)	142, 448, 467
BsmAI	GTCTC	2 cut(s)	182, 291
BsmFI	GGGAC	2 cut(s)	332, 507
BsnI	GGCC	5 cut(s)	142, 427, 441, 487, 568
BsoBI	CYCGRG	1 cut(s)	421
Bsp119I	TTCGAA	1 cut(s)	278
BspANI	GGCC	5 cut(s)	142, 427, 441, 487, 568
BspCNI	CTCAG	1 cut(s)	124
BspFNI	CGCG	6 cut(s)	217, 236, 334, 502, 693, 711
BspLI	GGNNCC	4 cut(s)	488, 495, 635, 739
BspT104I	TTCGAA	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	2 cut(s)	444, 564
BsrI	ACTGG	1 cut(s)	705
BssAI	RCCGGY	2 cut(s)	444, 564
BssECI	CCNNGG	5 cut(s)	203, 489, 490, 603, 629
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	203, 603
Bst2UI	CCWGG	2 cut(s)	231, 491
Bst4CI	ACNGT	2 cut(s)	51, 104
BstACI	GRCGYC	1 cut(s)	342
BstAPI	GCANNNNNTGC	1 cut(s)	472
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	4 cut(s)	44, 224, 511, 713
BstDEI	CTNAG	2 cut(s)	111, 435
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	6 cut(s)	217, 236, 334, 502, 693, 711
BstHHI	GCGC	4 cut(s)	219, 236, 336, 695
BstMAI	GTCTC	2 cut(s)	182, 291
BstMCI	CGRYCG	1 cut(s)	565
BstMWI	GCNNNNNNNGC	6 cut(s)	214, 223, 472, 550, 608, 701
BstNI	CCWGG	2 cut(s)	231, 491
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	229, 489
BstUI	CGCG	6 cut(s)	217, 236, 334, 502, 693, 711
BstV1I	GCAGC	4 cut(s)	206, 235, 341, 620
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	5 cut(s)	142, 427, 441, 487, 568
BtgI	CCRYGG	1 cut(s)	629
BtgZI	GCGATG	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	4 cut(s)	44, 224, 511, 713
CfoI	GCGC	4 cut(s)	219, 236, 336, 695
Cfr10I	RCCGGY	2 cut(s)	444, 564
Cfr13I	GGNCC	6 cut(s)	240, 439, 455, 486, 494, 567
CseI	GACGC	1 cut(s)	491
CviAII	CATG	1 cut(s)	23
DdeI	CTNAG	2 cut(s)	111, 435
DrdI	GACNNNNNNGTC	1 cut(s)	501
DriI	GACNNNNNGTC	1 cut(s)	622
DseDI	GACNNNNNNGTC	1 cut(s)	501
Eam1105I	GACNNNNNGTC	1 cut(s)	622
EciI	GGCGGA	2 cut(s)	243, 677
Eco130I	CCWWGG	2 cut(s)	203, 603
Eco32I	GATATC	1 cut(s)	685
Eco47I	GGWCC	3 cut(s)	240, 455, 494
Eco88I	CYCGRG	1 cut(s)	421
EcoO109I	RGGNCCY	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	229, 489
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	2 cut(s)	203, 603
ErhI	CCWWGG	2 cut(s)	203, 603
FaeI	CATG	1 cut(s)	26
FaiI	YATR	2 cut(s)	24, 162
FaqI	GGGAC	2 cut(s)	332, 507
FatI	CATG	1 cut(s)	22
FauI	CCCGC	1 cut(s)	359
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	6 cut(s)	220, 227, 249, 355, 609, 691
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	6 cut(s)	220, 227, 249, 355, 609, 691
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	4 cut(s)	218, 235, 335, 694
GluI	GCNGC	6 cut(s)	220, 227, 249, 355, 609, 691
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	5 cut(s)	142, 427, 441, 487, 568
HapII	CCGG	4 cut(s)	143, 445, 506, 565
HgaI	GACGC	1 cut(s)	491
HhaI	GCGC	4 cut(s)	219, 236, 336, 695
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	4 cut(s)	217, 234, 334, 693
HinP1I	GCGC	4 cut(s)	217, 234, 334, 693
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	4 cut(s)	143, 445, 506, 565
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	8, 240
Hpy188I	TCNGA	5 cut(s)	272, 557, 657, 726, 742
Hpy188III	TCNNGA	1 cut(s)	595
Hpy8I	GTNNAC	2 cut(s)	8, 240
Hpy99I	CGWCG	6 cut(s)	9, 108, 347, 542, 584, 620
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	2 cut(s)	51, 104
HpyCH4IV	ACGT	2 cut(s)	342, 540
HpyCH4V	TGCA	4 cut(s)	42, 222, 475, 544
HpyF10VI	GCNNNNNNNGC	6 cut(s)	214, 223, 472, 550, 608, 701
HpyF3I	CTNAG	2 cut(s)	111, 435
HpySE526I	ACGT	2 cut(s)	342, 540
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	4 cut(s)	217, 234, 334, 693
LmnI	GCTCC	3 cut(s)	194, 256, 743
Lsp1109I	GCAGC	4 cut(s)	206, 235, 341, 620
LweI	GCATC	2 cut(s)	217, 667
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	2 cut(s)	342, 540
MaeIII	GTNAC	1 cut(s)	25
MboII	GAAGA	6 cut(s)	73, 307, 379, 382, 657, 660
MfeI	CAATTG	1 cut(s)	363
MluCI	AATT	4 cut(s)	281, 363, 530, 645
MlyI	GAGTC	1 cut(s)	3
MmeI	TCCRAC	2 cut(s)	250, 696
MspA1I	CMGCKG	2 cut(s)	248, 354
MspI	CCGG	4 cut(s)	143, 445, 506, 565
MspR9I	CCNGG	2 cut(s)	231, 491
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	2 cut(s)	231, 491
MvnI	CGCG	6 cut(s)	217, 236, 334, 502, 693, 711
MwoI	GCNNNNNNNGC	6 cut(s)	214, 223, 472, 550, 608, 701
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	4 cut(s)	488, 495, 635, 739
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	26
NspV	TTCGAA	1 cut(s)	278
PaeR7I	CTCGAG	1 cut(s)	421
PasI	CCCWGGG	1 cut(s)	490
PflFI	GACNNNGTC	1 cut(s)	344
PflMI	CCANNNNNTGG	1 cut(s)	448
PkrI	GCNGC	6 cut(s)	221, 228, 250, 356, 610, 692
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
Psp6I	CCWGG	2 cut(s)	229, 489
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	2 cut(s)	229, 489
PspN4I	GGNNCC	4 cut(s)	488, 495, 635, 739
PspPI	GGNCC	6 cut(s)	240, 439, 455, 486, 494, 567
PspXI	VCTCGAGB	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	6
SatI	GCNGC	6 cut(s)	220, 227, 249, 355, 609, 691
Sau96I	GGNCC	6 cut(s)	240, 439, 455, 486, 494, 567
SchI	GAGTC	1 cut(s)	3
ScrFI	CCNGG	2 cut(s)	231, 491
SetI	ASST	8 cut(s)	199, 325, 345, 402, 472, 543, 579, 624
SfaNI	GCATC	2 cut(s)	217, 667
Sfr274I	CTCGAG	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	3 cut(s)	240, 455, 494
SlaI	CTCGAG	1 cut(s)	421
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	4 cut(s)	281, 363, 530, 645
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	229, 489
StyI	CCWWGG	2 cut(s)	203, 603
TaaI	ACNGT	2 cut(s)	51, 104
TaiI	ACGT	2 cut(s)	345, 543
TaqI	TCGA	6 cut(s)	7, 177, 278, 422, 582, 615
TaqII	GACCGA	1 cut(s)	64
TasI	AATT	4 cut(s)	281, 363, 530, 645
TauI	GCSGC	2 cut(s)	229, 693
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	4 cut(s)	219, 248, 354, 608
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	54
Tth111I	GACNNNGTC	1 cut(s)	344
Van91I	CCANNNNNTGG	1 cut(s)	448
VpaK11BI	GGWCC	3 cut(s)	240, 455, 494
XceI	RCATGY	1 cut(s)	26
XhoI	CTCGAG	1 cut(s)	421
XmaJI	CCTAGG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	7
XspI	CTAG	1 cut(s)	204
ZraI	GACGTC	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.