Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019843.1

Orthogroup ID

OG0018882

Physical Location & Seq

Genomic Coordinates Forward (+)

36 .. 1614

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019843.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggtaatctcgccttatggtgcaaggcttctcacaaaacgccctgaaatcgactacgatgagacatattctctcgtaattgatgtcattgcactccactaccctgtcagtttggtagttttccgaataactgaacatgcagcttacaaatgtgctagatatagctctgcgccaacgcgacgccattggattggtgtaaaagatatctttcgatacttgagatgtatgaatgatatgggcttgttctatccctacaaagagatgatggattcggacccatcacacaccaggtacgccgccaacgctggcctgcgttctctatccccatcccaaaacgacatgtgttttgaaagagccatgaagaacctctccaccattctcgtcctcgcggttctaatcacctgcggcgccaccttagtcagatcggacggctccgatcaccgctacaatgaaggcgacgtcgtccccctctacgccaataaggtcggccccttccacaaccccaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

169

Amino Acids

19.27

Weight (kDa)

8.66

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018882)

Species	Orthologous Gene IDs
malus_domestica	MD06G1235000.v1.1 MD06G1235200.v1.1
rosa_multiflora	Rmu_co8090820.1_g000001 Rmu_sc0000016.1_g000004 Rmu_sc0000112.1_g000027 Rmu_sc0009988.1_g000017 Rmu_sc0019843.1_g000001 Rmu_sc0040871.1_g000001 Rmu_ssc0000126.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	410
AatII	GACGTC	1 cut(s)	462
Acc36I	ACCTGC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	407
AccII	CGCG	2 cut(s)	178, 389
AciI	CCGC	4 cut(s)	297, 389, 405, 442
AcyI	GRCGYC	3 cut(s)	181, 408, 459
AfaI	GTAC	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	2 cut(s)	287, 503
AluBI	AGCT	2 cut(s)	143, 165
AluI	AGCT	2 cut(s)	143, 165
Alw26I	GTCTC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	307, 487
ApeKI	GCWGC	1 cut(s)	140
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AspLEI	GCGC	2 cut(s)	172, 410
AspS9I	GGNCC	2 cut(s)	274, 488
AsuHPI	GGTGA	2 cut(s)	391, 431
AvaII	GGWCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	407
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	3 cut(s)	259, 286, 334
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	2 cut(s)	289, 505
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	411
BfuAI	ACCTGC	1 cut(s)	410
BisI	GCNGC	3 cut(s)	141, 297, 406
BlsI	GCNGC	3 cut(s)	142, 298, 407
Bme1390I	CCNGG	2 cut(s)	289, 505
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	274, 488
BmiI	GGNNCC	4 cut(s)	276, 409, 433, 490
BmrFI	CCNGG	2 cut(s)	289, 505
BpuEI	CTTGAG	1 cut(s)	238
BsaHI	GRCGYC	3 cut(s)	181, 408, 459
BsaJI	CCNNGG	1 cut(s)	503
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	289, 505
BseDI	CCNNGG	1 cut(s)	503
BseGI	GGATG	1 cut(s)	326
BseMI	GCAATG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	152
Bsh1236I	CGCG	2 cut(s)	178, 389
BshFI	GGCC	2 cut(s)	309, 489
BshNI	GGYRCC	1 cut(s)	407
BslFI	GGGAC	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	309, 489
Bsp143I	GATC	2 cut(s)	422, 436
BspACI	CCGC	4 cut(s)	297, 389, 405, 442
BspANI	GGCC	2 cut(s)	309, 489
BspFNI	CGCG	2 cut(s)	178, 389
BspLI	GGNNCC	4 cut(s)	276, 409, 433, 490
BspMI	ACCTGC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	503
BssMI	GATC	2 cut(s)	422, 436
BssNI	GRCGYC	3 cut(s)	181, 408, 459
Bst2UI	CCWGG	2 cut(s)	289, 505
BstACI	GRCGYC	3 cut(s)	181, 408, 459
BstC8I	GCNNGC	2 cut(s)	307, 311
BstDEI	CTNAG	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	326
BstFNI	CGCG	2 cut(s)	178, 389
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	2 cut(s)	172, 410
BstKTI	GATC	2 cut(s)	425, 439
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	422, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	2 cut(s)	289, 505
BstNSI	RCATGY	2 cut(s)	140, 343
BstSCI	CCNGG	2 cut(s)	287, 503
BstUI	CGCG	2 cut(s)	178, 389
BstV1I	GCAGC	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	309, 489
BtsCI	GGATG	1 cut(s)	326
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	2 cut(s)	307, 311
CfoI	GCGC	2 cut(s)	172, 410
Cfr13I	GGNCC	2 cut(s)	274, 488
CseI	GACGC	1 cut(s)	189
CsiI	ACCWGGT	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	3 cut(s)	137, 340, 358
CviJI	RGCY	8 cut(s)	28, 143, 165, 240, 309, 356, 432, 489
CviKI_1	RGCY	8 cut(s)	28, 143, 165, 240, 309, 356, 432, 489
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	415
DinI	GGCGCC	1 cut(s)	409
DpnI	GATC	2 cut(s)	424, 438
DpnII	GATC	2 cut(s)	422, 436
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	274
EcoRII	CCWGG	2 cut(s)	287, 503
EcoRV	GATATC	1 cut(s)	205
EgeI	GGCGCC	1 cut(s)	409
EheI	GGCGCC	1 cut(s)	409
FaeI	CATG	3 cut(s)	140, 343, 361
FaiI	YATR	8 cut(s)	18, 67, 138, 162, 227, 236, 341, 359
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	3 cut(s)	136, 339, 357
Fnu4HI	GCNGC	3 cut(s)	141, 297, 406
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	3 cut(s)	141, 297, 406
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	2 cut(s)	171, 409
GluI	GCNGC	3 cut(s)	141, 297, 406
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	309, 489
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	2 cut(s)	172, 410
Hin1I	GRCGYC	3 cut(s)	181, 408, 459
Hin1II	CATG	3 cut(s)	140, 343, 361
Hin6I	GCGC	2 cut(s)	170, 408
HinP1I	GCGC	2 cut(s)	170, 408
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	2 cut(s)	391, 431
Hpy188I	TCNGA	5 cut(s)	125, 274, 422, 427, 436
Hpy99I	CGWCG	3 cut(s)	183, 461, 464
HpyAV	CCTTC	2 cut(s)	446, 502
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	3 cut(s)	23, 92, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	415
HpySE526I	ACGT	1 cut(s)	459
Hsp92I	GRCGYC	3 cut(s)	181, 408, 459
Hsp92II	CATG	3 cut(s)	140, 343, 361
HspAI	GCGC	2 cut(s)	170, 408
KasI	GGCGCC	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	422, 436
LmnI	GCTCC	1 cut(s)	437
LpnPI	CCDG	8 cut(s)	57, 117, 274, 291, 301, 323, 415, 490
Lsp1109I	GCAGC	1 cut(s)	152
MabI	ACCWGGT	1 cut(s)	287
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	459
MalI	GATC	2 cut(s)	424, 438
MboI	GATC	2 cut(s)	422, 436
MboII	GAAGA	1 cut(s)	373
MluCI	AATT	1 cut(s)	78
Mly113I	GGCGCC	1 cut(s)	408
MnlI	CCTC	3 cut(s)	377, 395, 479
MspR9I	CCNGG	2 cut(s)	289, 505
MvaI	CCWGG	2 cut(s)	289, 505
MvnI	CGCG	2 cut(s)	178, 389
MwoI	GCNNNNNNNGC	1 cut(s)	302
NarI	GGCGCC	1 cut(s)	408
NdeII	GATC	2 cut(s)	422, 436
NlaIII	CATG	3 cut(s)	140, 343, 361
NlaIV	GGNNCC	4 cut(s)	276, 409, 433, 490
NspI	RCATGY	2 cut(s)	140, 343
PaqCI	CACCTGC	1 cut(s)	410
PciI	ACATGT	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	269
PflFI	GACNNNGTC	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	142, 298, 407
PluTI	GGCGCC	1 cut(s)	411
PscI	ACATGT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	287, 503
PspGI	CCWGG	2 cut(s)	287, 503
PspN4I	GGNNCC	4 cut(s)	276, 409, 433, 490
PspPI	GGNCC	2 cut(s)	274, 488
PsyI	GACNNNGTC	1 cut(s)	461
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SatI	GCNGC	3 cut(s)	141, 297, 406
Sau3AI	GATC	2 cut(s)	422, 436
Sau96I	GGNCC	2 cut(s)	274, 488
ScrFI	CCNGG	2 cut(s)	289, 505
SetI	ASST	9 cut(s)	145, 167, 293, 369, 404, 416, 462, 486, 509
SexAI	ACCWGGT	1 cut(s)	287
SfoI	GGCGCC	1 cut(s)	409
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	4 cut(s)	297, 389, 405, 442
SspDI	GGCGCC	1 cut(s)	407
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	287, 503
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	2 cut(s)	51, 211
TasI	AATT	1 cut(s)	78
TauI	GCSGC	2 cut(s)	299, 408
TfiI	GAWTC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	242, 374, 465
Tth111I	GACNNNGTC	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	274
XceI	RCATGY	2 cut(s)	140, 343
XspI	CTAG	1 cut(s)	156
ZraI	GACGTC	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.