Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040871.1

Orthogroup ID

OG0018882

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 719

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040871.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 232 bp

atgggcaagactatggcggtgggagtaccagtcatcatcgcctttctgatcctgtgcggcgctgcagatctggtcacgtccgacgcctccaatcatcgttacaaagaaggagatgcagtcccgctctacgccaacaaggtcggaccctttcacaaccccagtgaaacctacaggtactttgatctcccattctgctcaccagatgcggttaaagagaaaaaggaagctcttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

77

Amino Acids

8.39

Weight (kDa)

6.03

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018882)

Species	Orthologous Gene IDs
malus_domestica	MD06G1235000.v1.1 MD06G1235200.v1.1
rosa_multiflora	Rmu_co8090820.1_g000001 Rmu_sc0000016.1_g000004 Rmu_sc0000112.1_g000027 Rmu_sc0009988.1_g000017 Rmu_sc0019843.1_g000001 Rmu_sc0040871.1_g000001 Rmu_ssc0000126.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	4 cut(s)	17, 57, 122, 206
AclWI	GGATC	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	27, 176
AjiI	CACGTC	1 cut(s)	78
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
AlwI	GGATC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	49
BfmI	CTRYAG	2 cut(s)	63, 169
BfoI	RGCGCY	1 cut(s)	63
BglII	AGATCT	1 cut(s)	67
BisI	GCNGC	2 cut(s)	58, 63
BlsI	GCNGC	2 cut(s)	59, 64
Bme18I	GGWCC	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	2 cut(s)	103, 193
BmuI	ACTGGG	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	84
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 102, 132
Bse1I	ACTGG	2 cut(s)	29, 159
BseNI	ACTGG	2 cut(s)	29, 159
BseXI	GCAGC	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	48, 67, 181
BspACI	CCGC	4 cut(s)	17, 57, 122, 206
BspLI	GGNNCC	1 cut(s)	145
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	29, 159
BssMI	GATC	3 cut(s)	48, 67, 181
BssNI	GRCGYC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	51, 70, 184
BstMBI	GATC	3 cut(s)	48, 67, 181
BstSFI	CTRYAG	2 cut(s)	63, 169
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	22
BtrI	CACGTC	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	26, 175
CviJI	RGCY	1 cut(s)	227
CviKI_1	RGCY	1 cut(s)	227
CviQI	GTAC	2 cut(s)	26, 175
DpnI	GATC	3 cut(s)	50, 69, 183
DpnII	GATC	3 cut(s)	48, 67, 181
Eco47I	GGWCC	1 cut(s)	143
FaiI	YATR	1 cut(s)	14
FaqI	GGGAC	1 cut(s)	104
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	58, 63
Fsp4HI	GCNGC	2 cut(s)	58, 63
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	2 cut(s)	58, 63
HaeII	RGCGCY	1 cut(s)	63
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HphI	GGTGA	1 cut(s)	189
Hpy188I	TCNGA	3 cut(s)	48, 82, 143
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	65, 116
HpySE526I	ACGT	1 cut(s)	77
Hsp92I	GRCGYC	1 cut(s)	84
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	48, 67, 181
LpnPI	CCDG	6 cut(s)	42, 56, 65, 157, 172, 213
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	103, 193
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	73, 98
MalI	GATC	3 cut(s)	50, 69, 183
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	3 cut(s)	48, 67, 181
MflI	RGATCY	1 cut(s)	67
MmeI	TCCRAC	2 cut(s)	105, 121
MnlI	CCTC	1 cut(s)	97
MseI	TTAA	1 cut(s)	210
NdeII	GATC	3 cut(s)	48, 67, 181
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	59, 64
PspN4I	GGNNCC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	2 cut(s)	27, 176
RsaNI	GTAC	2 cut(s)	26, 175
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	58, 63
Sau3AI	GATC	3 cut(s)	48, 67, 181
Sau96I	GGNCC	1 cut(s)	143
SetI	ASST	5 cut(s)	80, 141, 170, 176, 229
SfaNI	GCATC	2 cut(s)	103, 193
SfcI	CTRYAG	2 cut(s)	63, 169
SinI	GGWCC	1 cut(s)	143
SsiI	CCGC	4 cut(s)	17, 57, 122, 206
TaiI	ACGT	1 cut(s)	80
TauI	GCSGC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	73
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.