Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005280

Physical Location & Seq

Genomic Coordinates Reverse (-)

1511258 .. 1514064

Gene Structure 2807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1017500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGGAGAAGTGGCACCGGTTGATGCAGAACCTATTCGGTGATCAATCCGAAGAGGAAGAGGAAGAGGTCGATTCTGAGCACGAGTCCAATCCCCATCCCAATTCTGTTGTGGTTTTGTTAAAGGCGGTGGATGATTTGGATGAAAGCTCTACTATCAGCGGAGACCTCTACAGGGTTGATCAAAGAGGGGTCTACAATCTTACCAAAGCATTGCAGGACTATAACAACGAAATGGCGCAATTACGAGCAGGAAAGAGTAGCAAGAGCAAACTTACAATTGTTAAGTTCAGGACTTCGGAGTCGGTGGATGGATGGGAAAGTTCGTTCGTCAGGGGGCTTACTTTCAGGATGTGGTTGCTTCTAAGTATGATGGAGGAATGGATGCCAAGTTCGAATTCACTTTCACGGGAGATGCTGTTTTCTCTGGATATGTTTTCACCAGACGAGGGTACTAACCTAAAAGCAGCTTCCCAAAAACAAATTCATGGTATTTTATTATTAATTACAGATAGTATTTCTATGTTTTCCCTCTTTGTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIA30 NAD_binding_10

Protein Analysis

182

Amino Acids

20.66

Weight (kDa)

4.71

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16720 AT1G16720 AT1G16720
fragaria_vesca	FvH4_6g36340 FvH4_6g36340 FvH4_6g36340 FvH4_6g36340 FvH4_6g36340 FvH4_6g36340 FvH4_6g36340 FvH4_6g36340
malus_domestica	MD07G1017500.v1.1 MD07G1024000.v1.1 MD07G1024200.v1.1 MD09G1169900.v1.1
prunus_persica	Prupe.3G028100_v2.0.a1 Prupe.3G028100_v2.0.a1 Prupe.3G028100_v2.0.a1
pyrus_communis	pycom07g01170
rosa_chinensis	RchiOBHm_Chr2g0148341
rosa_laevigata	RLG00000020341
rosa_multiflora	Rmu_sc0011136.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098850
rosa_rugosa	Rorug02G0405900
rosa_samantha	Rh2AG465000 Rh2BG477600 Rh2CG451400 Rh2DG486500
rosa_wichuraiana	Rw2G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	2 cut(s)	128, 162
AcsI	RAATTY	2 cut(s)	397, 483
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	175, 449
AgeI	ACCGGT	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	4 cut(s)	382, 414, 468, 500
AloI	GAACNNNNNNTCC	4 cut(s)	311, 343, 376, 408
AluBI	AGCT	2 cut(s)	150, 470
AluI	AGCT	2 cut(s)	150, 470
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	2 cut(s)	397, 483
AseI	ATTAAT	1 cut(s)	503
AsiGI	ACCGGT	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	53, 432
AsuII	TTCGAA	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	15
BauI	CACGAG	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	4 cut(s)	105, 305, 309, 367
BclI	TGATCA	2 cut(s)	43, 181
BcoDI	GTCTC	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	17
BmsI	GCATC	3 cut(s)	15, 375, 405
Bpu14I	TTCGAA	1 cut(s)	395
BsaI	GGTCTC	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 449
Bse118I	RCCGGY	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	212
BseGI	GGATG	7 cut(s)	97, 139, 148, 316, 320, 357, 390
BseLI	CCNNNNNNNGG	2 cut(s)	175, 449
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	479
BshNI	GGYRCC	1 cut(s)	15
BshTI	ACCGGT	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	175, 449
BsmAI	GTCTC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	43, 181
BspACI	CCGC	2 cut(s)	128, 162
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	17
BspT104I	TTCGAA	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	18
BssMI	GATC	2 cut(s)	43, 181
BssSI	CACGAG	1 cut(s)	83
Bst2BI	CACGAG	1 cut(s)	83
Bst6I	CTCTTC	3 cut(s)	48, 54, 60
BstBI	TTCGAA	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	78, 365
BstF5I	GGATG	7 cut(s)	97, 139, 148, 316, 320, 357, 390
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	2 cut(s)	46, 184
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	2 cut(s)	43, 181
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	479
BtsCI	GGATG	7 cut(s)	97, 139, 148, 316, 320, 357, 390
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	453
CspAI	ACCGGT	1 cut(s)	18
CviAII	CATG	1 cut(s)	488
CviJI	RGCY	3 cut(s)	150, 340, 470
CviKI_1	RGCY	3 cut(s)	150, 340, 470
CviQI	GTAC	1 cut(s)	453
DdeI	CTNAG	2 cut(s)	78, 365
DpnI	GATC	2 cut(s)	45, 183
DpnII	GATC	2 cut(s)	43, 181
DrdI	GACNNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	1 cut(s)	301
Eam1104I	CTCTTC	3 cut(s)	48, 54, 60
EarI	CTCTTC	3 cut(s)	48, 54, 60
Eco31I	GGTCTC	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	397
FaeI	CATG	1 cut(s)	491
FaiI	YATR	6 cut(s)	225, 371, 434, 489, 524, 544
FatI	CATG	1 cut(s)	487
FbaI	TGATCA	2 cut(s)	43, 181
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	7 cut(s)	84, 146, 155, 323, 327, 364, 397
Fsp4HI	GCNGC	1 cut(s)	468
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	468
HapII	CCGG	1 cut(s)	19
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	1 cut(s)	491
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	3 cut(s)	74, 86, 302
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	2 cut(s)	53, 432
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	52, 79, 301
Hpy188III	TCNNGA	3 cut(s)	292, 349, 428
Hpy8I	GTNNAC	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	28, 217
HpyF3I	CTNAG	2 cut(s)	78, 365
Hsp92II	CATG	1 cut(s)	491
HspAI	GCGC	1 cut(s)	239
Ksp22I	TGATCA	2 cut(s)	43, 181
Kzo9I	GATC	2 cut(s)	43, 181
LpnPI	CCDG	9 cut(s)	32, 160, 203, 237, 277, 319, 334, 413, 456
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	3 cut(s)	15, 375, 405
MalI	GATC	2 cut(s)	45, 183
MboI	GATC	2 cut(s)	43, 181
MboII	GAAGA	3 cut(s)	65, 71, 77
MfeI	CAATTG	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	6 cut(s)	103, 242, 279, 397, 483, 504
MlyI	GAGTC	2 cut(s)	95, 311
MnlI	CCTC	8 cut(s)	49, 55, 61, 179, 182, 370, 442, 542
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	3 cut(s)	122, 285, 503
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	279
NdeII	GATC	2 cut(s)	43, 181
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	1 cut(s)	17
NspV	TTCGAA	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	74
PinAI	ACCGGT	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	2 cut(s)	94, 310
PpsI	GAGTC	2 cut(s)	94, 310
PshBI	ATTAAT	1 cut(s)	503
PspN4I	GGNNCC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
SaqAI	TTAA	3 cut(s)	122, 285, 503
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	2 cut(s)	43, 181
SchI	GAGTC	2 cut(s)	95, 311
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	6 cut(s)	36, 72, 152, 171, 462, 472
SfaNI	GCATC	3 cut(s)	15, 375, 405
SfcI	CTRYAG	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	395
Sse9I	AATT	6 cut(s)	103, 242, 279, 397, 483, 504
SsiI	CCGC	2 cut(s)	128, 162
TaqI	TCGA	2 cut(s)	72, 395
TasI	AATT	6 cut(s)	103, 242, 279, 397, 483, 504
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	122, 285, 503
Tru9I	TTAA	3 cut(s)	122, 285, 503
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	159, 476
VspI	ATTAAT	1 cut(s)	503
XapI	RAATTY	2 cut(s)	397, 483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.