MD07G1024000.v1.1

Complex I intermediate-associated protein 30 (CIA30)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
2022677 .. 2023257
581 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1024000.v1.1.491

Sequence Viewer

Length: 420 bp
ATGGGTTTGCAAGATATTTTTTGTTGTTTTCTCTTGCCGTTGACTGGGGATGTGGGTGATCCTGTTACCCTGTACACCGCAGTACAGGGCGGTAACAAGATTATCTATTGTGCTACTGCACTCTCTATAATCAGCGGAGACCTCTATAGGGCTGATCAAGGAGGGGTCTACAATCTTACCAAAGCATTTCAGGACTATAACAACAAAATGGCGCAATTACGAGCAGGAAAGAGTGGCAAGAGCAAACTTACAATTGTAAAGTTCAAGACTCTGGAGTCAGTGGATGGATGGGAAGTTCGTCAGGGGACTTATTTTCAGGATGTGGTTGCTTCCAAGTATGATGGAGGAATGGATGCCAAGTTCGAATTCACTTCACCAGAGATGCTGTTTTCTTTTACTCTATTTCTTGCTGCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.27

Weight (kDa)

5.31

Isoelectric Point (pI)

28.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 168
AciI CCGC 3 cut(s) 78, 90, 135
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 2 cut(s) 74, 84
AfiI CCNNNNNNNGG 2 cut(s) 44, 148
AgsI TTSAA 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AloI GAACNNNNNNTCC 4 cut(s) 279, 311, 344, 376
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 53
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 365
AspLEI GCGC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 68, 366
AsuII TTCGAA 1 cut(s) 363
BbvI GCAGC 1 cut(s) 397
BccI CCATC 3 cut(s) 278, 282, 335
BceAI ACGGC 1 cut(s) 22
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 145
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 2 cut(s) 343, 372
BmuI ACTGGG 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 293
Bpu14I TTCGAA 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 148
Bse1I ACTGG 1 cut(s) 49
BseGI GGATG 5 cut(s) 55, 289, 293, 325, 358
BseLI CCNNNNNNNGG 2 cut(s) 44, 148
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 44, 148
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 319
Bso31I GGTCTC 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 363
Bsp1407I TGTACA 1 cut(s) 72
Bsp143I GATC 2 cut(s) 58, 154
BspACI CCGC 3 cut(s) 78, 90, 135
BspPI GGATC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 72
BsrI ACTGG 1 cut(s) 49
BssMI GATC 2 cut(s) 58, 154
BstAUI TGTACA 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 363
BstF5I GGATG 5 cut(s) 55, 289, 293, 325, 358
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 2 cut(s) 61, 157
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 58, 154
BstSFI CTRYAG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 397
BtsCI GGATG 5 cut(s) 55, 289, 293, 325, 358
BtsIMutI CAGTG 1 cut(s) 285
CfoI GCGC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 73, 83
CviJI RGCY 1 cut(s) 152
CviKI_1 RGCY 1 cut(s) 152
CviQI GTAC 2 cut(s) 73, 83
DpnI GATC 2 cut(s) 60, 156
DpnII GATC 2 cut(s) 58, 154
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 365
FaiI YATR 4 cut(s) 128, 147, 198, 339
FaqI GGGAC 1 cut(s) 319
FbaI TGATCA 1 cut(s) 154
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 5 cut(s) 62, 296, 300, 332, 365
Fsp4HI GCNGC 1 cut(s) 411
GlaI GCGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 293
HhaI GCGC 1 cut(s) 214
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 2 cut(s) 268, 275
HphI GGTGA 2 cut(s) 68, 366
Hpy166II GTNNAC 3 cut(s) 42, 75, 169
Hpy188III TCNNGA 4 cut(s) 191, 265, 272, 317
Hpy8I GTNNAC 3 cut(s) 42, 75, 169
HpyCH4V TGCA 3 cut(s) 10, 119, 413
HspAI GCGC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 2 cut(s) 58, 154
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 2 cut(s) 343, 372
MaeIII GTNAC 2 cut(s) 64, 92
MalI GATC 2 cut(s) 60, 156
MboI GATC 2 cut(s) 58, 154
MfeI CAATTG 1 cut(s) 252
MluCI AATT 3 cut(s) 215, 252, 365
MlyI GAGTC 2 cut(s) 262, 284
MnlI CCTC 3 cut(s) 152, 155, 338
MspA1I CMGCKG 1 cut(s) 135
MunI CAATTG 1 cut(s) 252
NdeII GATC 2 cut(s) 58, 154
NspV TTCGAA 1 cut(s) 363
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 2 cut(s) 262, 283
PpsI GAGTC 2 cut(s) 262, 283
RsaI GTAC 2 cut(s) 74, 84
RsaNI GTAC 2 cut(s) 73, 83
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 2 cut(s) 58, 154
SchI GAGTC 2 cut(s) 262, 284
SetI ASST 1 cut(s) 144
SfaNI GCATC 2 cut(s) 343, 372
SfcI CTRYAG 1 cut(s) 145
SfuI TTCGAA 1 cut(s) 363
Sse9I AATT 3 cut(s) 215, 252, 365
SsiI CCGC 3 cut(s) 78, 90, 135
TaqI TCGA 1 cut(s) 363
TasI AATT 3 cut(s) 215, 252, 365
TatI WGTACW 2 cut(s) 72, 82
TscAI CASTG 1 cut(s) 285
TseI GCWGC 1 cut(s) 410
TspRI CASTG 1 cut(s) 285
XapI RAATTY 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.