Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005280

Physical Location & Seq

Genomic Coordinates Forward (+)

2037988 .. 2039115

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1024200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGTTTGCAAGATATTTTTTGTTGTTTTCTCTTGCCGTTGACTGGGGATGTGGGTGATCCTGTTACCCTGTACACCGCAGTACAGGGCGGTAACAAGATTATCTATTGTGCTACTGCACTCTCTATAATCAGCGGAGACCTCTATAGGGCTGATCAAGGAGGGGTCTACAATCTTACCAAAGCATTTCAGGACTATAACAACAAAATGGCGCAATTACGAGCAGGAAAGAGTAGCAAGAGCAAACTTACAATTGTAAAGTTCAAGACTCTGGAGTCAGTGGATGGATGGGAAGTTCGTCAGGGGACTTACTTTGGGTCGGACCCTCGACCGGTAAATGCCTGTGTGCAAAGGATTGTCATGGCAGCGAGATCATGTCGCTCTGGGAAGCTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CIA30 NAD_binding_10

Protein Analysis

133

Amino Acids

14.44

Weight (kDa)

9.18

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16720 AT1G16720 AT1G16720
fragaria_vesca	FvH4_6g36340 FvH4_6g36340 FvH4_6g36340 FvH4_6g36340 FvH4_6g36340 FvH4_6g36340 FvH4_6g36340 FvH4_6g36340
malus_domestica	MD07G1017500.v1.1 MD07G1024000.v1.1 MD07G1024200.v1.1 MD09G1169900.v1.1
prunus_persica	Prupe.3G028100_v2.0.a1 Prupe.3G028100_v2.0.a1 Prupe.3G028100_v2.0.a1
pyrus_communis	pycom07g01170
rosa_chinensis	RchiOBHm_Chr2g0148341
rosa_laevigata	RLG00000020341
rosa_multiflora	Rmu_sc0011136.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098850
rosa_rugosa	Rorug02G0405900
rosa_samantha	Rh2AG465000 Rh2BG477600 Rh2CG451400 Rh2DG486500
rosa_wichuraiana	Rw2G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	3 cut(s)	78, 90, 135
AclWI	GGATC	1 cut(s)	53
AfaI	GTAC	2 cut(s)	74, 84
AfiI	CCNNNNNNNGG	3 cut(s)	44, 148, 331
AgeI	ACCGGT	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	265
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	365
AsiGI	ACCGGT	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	2 cut(s)	278, 282
BceAI	ACGGC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	145
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 148, 331
Bse118I	RCCGGY	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	49
BseGI	GGATG	3 cut(s)	55, 289, 293
BseLI	CCNNNNNNNGG	3 cut(s)	44, 148, 331
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	377
BsgI	GTGCAG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	332
BshTI	ACCGGT	1 cut(s)	331
BsiEI	CGRYCG	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	3 cut(s)	44, 148, 331
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	319
Bso31I	GGTCTC	1 cut(s)	132
Bsp1407I	TGTACA	1 cut(s)	72
Bsp143I	GATC	3 cut(s)	58, 154, 371
BspACI	CCGC	3 cut(s)	78, 90, 135
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	331
BsrGI	TGTACA	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	331
BssMI	GATC	3 cut(s)	58, 154, 371
BstAUI	TGTACA	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	55, 289, 293
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	3 cut(s)	61, 157, 374
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	3 cut(s)	58, 154, 371
BstMCI	CGRYCG	1 cut(s)	332
BstSFI	CTRYAG	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	377
BtsCI	GGATG	3 cut(s)	55, 289, 293
BtsIMutI	CAGTG	1 cut(s)	285
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	73, 83
CspAI	ACCGGT	1 cut(s)	331
CviAII	CATG	2 cut(s)	361, 375
CviJI	RGCY	2 cut(s)	152, 391
CviKI_1	RGCY	2 cut(s)	152, 391
CviQI	GTAC	2 cut(s)	73, 83
DpnI	GATC	3 cut(s)	60, 156, 373
DpnII	GATC	3 cut(s)	58, 154, 371
DrdI	GACNNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	274
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	322
FaeI	CATG	2 cut(s)	364, 378
FaiI	YATR	5 cut(s)	128, 147, 198, 362, 376
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	2 cut(s)	360, 374
FbaI	TGATCA	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	3 cut(s)	62, 296, 300
Fsp4HI	GCNGC	1 cut(s)	366
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	293
HapII	CCGG	1 cut(s)	332
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	2 cut(s)	364, 378
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	268, 275
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	3 cut(s)	42, 75, 169
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	3 cut(s)	191, 265, 272
Hpy8I	GTNNAC	3 cut(s)	42, 75, 169
HpyCH4V	TGCA	3 cut(s)	10, 119, 349
Hsp92II	CATG	2 cut(s)	364, 378
HspAI	GCGC	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	58, 154, 371
Lsp1109I	GCAGC	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	64, 92
MalI	GATC	3 cut(s)	60, 156, 373
MboI	GATC	3 cut(s)	58, 154, 371
MfeI	CAATTG	1 cut(s)	252
MluCI	AATT	2 cut(s)	215, 252
MlyI	GAGTC	2 cut(s)	262, 284
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	3 cut(s)	152, 155, 336
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	252
NdeII	GATC	3 cut(s)	58, 154, 371
NlaIII	CATG	2 cut(s)	364, 378
NlaIV	GGNNCC	1 cut(s)	324
PinAI	ACCGGT	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	2 cut(s)	262, 283
PpsI	GAGTC	2 cut(s)	262, 283
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	322
RsaI	GTAC	2 cut(s)	74, 84
RsaNI	GTAC	2 cut(s)	73, 83
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	3 cut(s)	58, 154, 371
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	2 cut(s)	262, 284
SetI	ASST	2 cut(s)	144, 393
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	2 cut(s)	215, 252
SsiI	CCGC	3 cut(s)	78, 90, 135
TaqI	TCGA	1 cut(s)	328
TasI	AATT	2 cut(s)	215, 252
TatI	WGTACW	2 cut(s)	72, 82
TscAI	CASTG	1 cut(s)	285
TseI	GCWGC	1 cut(s)	365
TspRI	CASTG	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.