MD07G1039900.v1.1

Belongs to the glycosyl hydrolase 2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0019289
Physical Location & Seq
Forward (+)
3379611 .. 3382514
2904 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1039900.v1.1.491

Sequence Viewer

Length: 432 bp
ATGGTTGCTTCCTTGCCGGGTCAACTCGTTTCCCTCTTAGAGAACGGGCAGCATCACGTGTGGGAGGACCAGTCGATCATCAAATGGCGGAAGAAAGACGCCCATGTCCCTTTACGCTGCCATGAATCAGTTGAAGGGTCTCTGAAATATTGGTATGAACGCAACAAAGTGAATTTTCTGGTATCCGACTCTGCTGTTTGGAATGATGATGCTGTTCTTGAAGCTCTTGACAGTGCGGCTCTTTGGGTCAAGGGCTTGCCTTTTGTCAAGTCCTTGTCAGGCTTTTGGAAATTCTTCTTGGCTTCCAGTCCTAAAAATGTTCCCGTAAATTTTTATGACTTTGCATTTCCTGATATTCAGTGGGAAACTTTGCCTGGTCGCAGGATTTTTTGCACTTCGAAGCTGTTGATTCTGCTTTCTGCACGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00511 ko00600 ko01100 map00052 map00511 map00600 map01100
Pfam Domains
Protein Families
Bgal_small_N DUF4981 Glyco_hydro_2 Glyco_hydro_2_C Glyco_hydro_2_N

Protein Analysis

144

Amino Acids

16.36

Weight (kDa)

7.8

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019289)

Species Orthologous Gene IDs
malus_domestica MD07G1039900.v1.1 MD07G1040000.v1.1
rosa_chinensis RchiOBHm_Chr1g0324211
rosa_laevigata RLG00000030215
rosa_multiflora Rmu_sc0001850.1_g000039
rosa_samantha Rh1CG062400 Rh1CG062700 Rh1DG066500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AciI CCGC 2 cut(s) 88, 236
AcsI RAATTY 3 cut(s) 172, 290, 328
AcvI CACGTG 2 cut(s) 58, 425
AcyI GRCGYC 1 cut(s) 99
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 2 cut(s) 134, 221
AjnI CCWGG 1 cut(s) 373
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AleI CACNNNNGTG 1 cut(s) 427
AluBI AGCT 2 cut(s) 224, 403
AluI AGCT 2 cut(s) 224, 403
Alw26I GTCTC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 49, 117
ApoI RAATTY 3 cut(s) 172, 290, 328
Asp700I GAANNNNTTC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 67
AsuC2I CCSGG 1 cut(s) 18
AsuII TTCGAA 1 cut(s) 398
AvaII GGWCC 1 cut(s) 67
BbrPI CACGTG 2 cut(s) 58, 425
BbvI GCAGC 2 cut(s) 61, 104
BciT130I CCWGG 1 cut(s) 375
BciVI GTATCC 1 cut(s) 193
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 144
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 3 cut(s) 50, 118, 237
BlsI GCNGC 3 cut(s) 51, 119, 238
Bme1390I CCNGG 2 cut(s) 18, 375
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmrFI CCNGG 2 cut(s) 18, 375
BmsI GCATC 2 cut(s) 61, 199
Bpu14I TTCGAA 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 18
BsaAI YACGTR 2 cut(s) 58, 425
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse1I ACTGG 2 cut(s) 70, 306
BseBI CCWGG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 70, 306
BseXI GCAGC 2 cut(s) 61, 104
BsgI GTGCAG 1 cut(s) 405
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 144
Bsp119I TTCGAA 1 cut(s) 398
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 2 cut(s) 88, 236
BspT104I TTCGAA 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 144
BsrI ACTGG 2 cut(s) 70, 306
BssMI GATC 1 cut(s) 75
BssNI GRCGYC 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 233
BstACI GRCGYC 1 cut(s) 99
BstBAI YACGTR 2 cut(s) 58, 425
BstBI TTCGAA 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 37
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 2 cut(s) 16, 373
BstV1I GCAGC 2 cut(s) 61, 104
BsuI GTATCC 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 238, 365
Cac8I GCNNGC 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 1 cut(s) 107
CviAII CATG 2 cut(s) 104, 122
CviJI RGCY 6 cut(s) 224, 239, 255, 282, 302, 403
CviKI_1 RGCY 6 cut(s) 224, 239, 255, 282, 302, 403
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EciI GGCGGA 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 67
Eco72I CACGTG 2 cut(s) 58, 425
EcoRII CCWGG 1 cut(s) 373
FaeI CATG 2 cut(s) 107, 125
FaiI YATR 4 cut(s) 105, 123, 156, 336
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 103, 121
Fnu4HI GCNGC 3 cut(s) 50, 118, 237
Fsp4HI GCNGC 3 cut(s) 50, 118, 237
GluI GCNGC 3 cut(s) 50, 118, 237
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 2 cut(s) 107, 125
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HinfI GANTC 3 cut(s) 125, 188, 409
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 144, 187
Hpy188III TCNNGA 3 cut(s) 218, 227, 350
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4IV ACGT 2 cut(s) 57, 424
HpyCH4V TGCA 3 cut(s) 344, 393, 422
HpyF3I CTNAG 1 cut(s) 37
HpySE526I ACGT 2 cut(s) 57, 424
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 2 cut(s) 107, 125
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 9 cut(s) 30, 83, 164, 264, 319, 360, 363, 367, 387
Lsp1109I GCAGC 2 cut(s) 61, 104
LweI GCATC 2 cut(s) 61, 199
MaeII ACGT 2 cut(s) 57, 424
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 2 cut(s) 103, 286
MluCI AATT 3 cut(s) 172, 290, 328
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 2 cut(s) 44, 58
MroXI GAANNNNTTC 1 cut(s) 293
MslI CAYNNNNRTG 1 cut(s) 427
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 2 cut(s) 18, 375
MvaI CCWGG 1 cut(s) 375
NciI CCSGG 1 cut(s) 18
NdeII GATC 1 cut(s) 75
NlaIII CATG 2 cut(s) 107, 125
NspV TTCGAA 1 cut(s) 398
OliI CACNNNNGTG 1 cut(s) 427
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 2 cut(s) 125, 409
PkrI GCNGC 3 cut(s) 51, 119, 238
PleI GAGTC 1 cut(s) 182
PmaCI CACGTG 2 cut(s) 58, 425
PmlI CACGTG 2 cut(s) 58, 425
PpsI GAGTC 1 cut(s) 182
Ppu21I YACGTR 2 cut(s) 58, 425
Psp6I CCWGG 1 cut(s) 373
PspCI CACGTG 2 cut(s) 58, 425
PspGI CCWGG 1 cut(s) 373
PspPI GGNCC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 427
SatI GCNGC 3 cut(s) 50, 118, 237
Sau3AI GATC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 18, 375
SetI ASST 4 cut(s) 60, 226, 405, 427
SfaNI GCATC 2 cut(s) 61, 199
SfuI TTCGAA 1 cut(s) 398
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 427
Sse9I AATT 3 cut(s) 172, 290, 328
SsiI CCGC 2 cut(s) 88, 236
SspI AATATT 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 16, 373
TaaI ACNGT 1 cut(s) 233
TaiI ACGT 2 cut(s) 60, 427
TaqI TCGA 2 cut(s) 74, 398
TasI AATT 3 cut(s) 172, 290, 328
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 2 cut(s) 125, 409
TscAI CASTG 2 cut(s) 238, 365
TseI GCWGC 2 cut(s) 49, 117
TspDTI ATGAA 2 cut(s) 138, 171
TspRI CASTG 2 cut(s) 238, 365
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 3 cut(s) 172, 290, 328
XmnI GAANNNNTTC 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.