Rmu_sc0001850.1_g000039

Belongs to the glycosyl hydrolase 2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001850.1
OG0019289
Physical Location & Seq
Forward (+)
154349 .. 155400
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001850.1_g000039.1.cds

Sequence Viewer

Length: 411 bp
atggctgcttctatgatgggtcaactggtttctcccttggagaatggacatcatgtgtgggaggaccaatctttcatcaagtggaacaagagagatgcacatgtcactttacgttgccatgaatcaattgaaggatctcttaaatactggtatgaacgcaacaaagtgaattttatggtatccaactctgcaccttggaatgatgatgctgttcctgaagctcttcatagtgcagctctttggatcaagggcttgccttttgtggagtctttgtcaggctattggaaattttacttagcttccactcctggaaatgttcctttgaatttttaccacaccgcgtttcaggattctgagtggaaaactttgccaggtaaacatatatgtatctttacgtttacttttgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00511 ko00600 ko01100 map00052 map00511 map00600 map01100
Pfam Domains
Protein Families
Bgal_small_N DUF4981 Glyco_hydro_2 Glyco_hydro_2_C Glyco_hydro_2_N

Protein Analysis

136

Amino Acids

15.7

Weight (kDa)

6.36

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019289)

Species Orthologous Gene IDs
malus_domestica MD07G1039900.v1.1 MD07G1040000.v1.1
rosa_chinensis RchiOBHm_Chr1g0324211
rosa_laevigata RLG00000030215
rosa_multiflora Rmu_sc0001850.1_g000039
rosa_samantha Rh1CG062400 Rh1CG062700 Rh1DG066500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 341
AciI CCGC 1 cut(s) 339
AclWI GGATC 2 cut(s) 142, 251
AcsI RAATTY 3 cut(s) 169, 287, 325
AcuI CTGAAG 1 cut(s) 237
AflIII ACRYGT 1 cut(s) 100
AgsI TTSAA 2 cut(s) 131, 325
AjnI CCWGG 2 cut(s) 307, 370
AluBI AGCT 3 cut(s) 221, 236, 299
AluI AGCT 3 cut(s) 221, 236, 299
AlwI GGATC 2 cut(s) 142, 251
ApeKI GCWGC 2 cut(s) 5, 233
ApoI RAATTY 3 cut(s) 169, 287, 325
Asp700I GAANNNNTTC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 245
BccI CCATC 1 cut(s) 10
BciT130I CCWGG 2 cut(s) 309, 372
BciVI GTATCC 1 cut(s) 190
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 2 cut(s) 6, 234
BlsI GCNGC 2 cut(s) 7, 235
Bme1390I CCNGG 2 cut(s) 309, 372
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 2 cut(s) 309, 372
BmsI GCATC 2 cut(s) 85, 196
BsaJI CCNNGG 2 cut(s) 36, 194
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bse1I ACTGG 2 cut(s) 30, 152
BseBI CCWGG 2 cut(s) 309, 372
BseDI CCNNGG 2 cut(s) 36, 194
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 2 cut(s) 30, 152
BseXI GCAGC 1 cut(s) 245
BsgI GTGCAG 2 cut(s) 174, 252
Bsh1236I CGCG 1 cut(s) 341
Bsp143I GATC 2 cut(s) 134, 243
BspACI CCGC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 1 cut(s) 341
BspPI GGATC 2 cut(s) 142, 251
BspQI GCTCTTC 1 cut(s) 228
BsrI ACTGG 2 cut(s) 30, 152
BssECI CCNNGG 2 cut(s) 36, 194
BssMI GATC 2 cut(s) 134, 243
BssT1I CCWWGG 2 cut(s) 36, 194
Bst2UI CCWGG 2 cut(s) 309, 372
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 295, 354
BstFNI CGCG 1 cut(s) 341
BstKTI GATC 2 cut(s) 137, 246
BstMBI GATC 2 cut(s) 134, 243
BstNI CCWGG 2 cut(s) 309, 372
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 2 cut(s) 307, 370
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuI GTATCC 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 3 cut(s) 53, 101, 119
CviJI RGCY 6 cut(s) 5, 221, 236, 252, 279, 299
CviKI_1 RGCY 6 cut(s) 5, 221, 236, 252, 279, 299
DdeI CTNAG 2 cut(s) 295, 354
DpnI GATC 2 cut(s) 136, 245
DpnII GATC 2 cut(s) 134, 243
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 2 cut(s) 36, 194
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 2 cut(s) 307, 370
EcoT14I CCWWGG 2 cut(s) 36, 194
ErhI CCWWGG 2 cut(s) 36, 194
FaeI CATG 3 cut(s) 56, 104, 122
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 3 cut(s) 52, 100, 118
Fnu4HI GCNGC 2 cut(s) 6, 234
Fsp4HI GCNGC 2 cut(s) 6, 234
GluI GCNGC 2 cut(s) 6, 234
Hin1II CATG 3 cut(s) 56, 104, 122
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HinfI GANTC 3 cut(s) 122, 266, 350
Hpy166II GTNNAC 3 cut(s) 23, 377, 399
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 2 cut(s) 215, 347
Hpy8I GTNNAC 3 cut(s) 23, 377, 399
HpyAV CCTTC 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 112, 395
HpyCH4V TGCA 3 cut(s) 98, 191, 233
HpyF3I CTNAG 2 cut(s) 295, 354
HpySE526I ACGT 2 cut(s) 112, 395
Hsp92II CATG 3 cut(s) 56, 104, 122
Kzo9I GATC 2 cut(s) 134, 243
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 9 cut(s) 11, 133, 228, 261, 294, 321, 332, 357, 384
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 2 cut(s) 85, 196
MaeII ACGT 2 cut(s) 112, 395
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 136, 245
MboI GATC 2 cut(s) 134, 243
MboII GAAGA 1 cut(s) 215
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 1 cut(s) 134
MluCI AATT 4 cut(s) 126, 169, 287, 325
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 1 cut(s) 55
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 309, 372
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 2 cut(s) 309, 372
MvnI CGCG 1 cut(s) 341
NdeII GATC 2 cut(s) 134, 243
NlaIII CATG 3 cut(s) 56, 104, 122
NmuCI GTSAC 1 cut(s) 103
NspI RCATGY 1 cut(s) 104
PciI ACATGT 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 2 cut(s) 122, 350
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 2 cut(s) 7, 235
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PscI ACATGT 1 cut(s) 100
Psp6I CCWGG 2 cut(s) 307, 370
PspGI CCWGG 2 cut(s) 307, 370
PspPI GGNCC 1 cut(s) 64
PsuI RGATCY 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 6, 234
Sau3AI GATC 2 cut(s) 134, 243
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 309, 372
SetI ASST 7 cut(s) 115, 196, 223, 238, 301, 376, 398
SfaNI GCATC 2 cut(s) 85, 196
SinI GGWCC 1 cut(s) 64
Sse9I AATT 4 cut(s) 126, 169, 287, 325
SsiI CCGC 1 cut(s) 339
StyD4I CCNGG 2 cut(s) 307, 370
StyI CCWWGG 2 cut(s) 36, 194
TaiI ACGT 2 cut(s) 115, 398
TasI AATT 4 cut(s) 126, 169, 287, 325
TfiI GAWTC 2 cut(s) 122, 350
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 2 cut(s) 5, 233
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 4 cut(s) 64, 135, 168, 215
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 3 cut(s) 169, 287, 325
XceI RCATGY 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.