MD07G1040000.v1.1

Belongs to the glycosyl hydrolase 2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0019289
Physical Location & Seq
Forward (+)
3382516 .. 3384135
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1040000.v1.1.491

Sequence Viewer

Length: 561 bp
ATGCATGGTTTGGTCACTCAGGACAGCAGACTTCCTGCTGAATTTGAAATCACCGACTATATTTACCCATCCAGTACAGACAAGAAAAATGTATTAGCTGTTCAAGTTTTCAGATGGAGTGATGGCTCTTACCTTGAAGATCAAGATCATTGGTGGTTATCTGGCATTCATCGTGATGTGCTTCTCCTTTCCAAGCCACAGGTATTCATTGCAGACTATTTTTTCAAATCAACTCTGGCCGAGGACTTTTCTTATGCAGACATACAGGTTGATGTGAAAATAGATAACTCCAGAGAAACATCTAAAGATAGTATTCTTTCCAACTACACAAAAGAAGCTTCATTATTTGACATGGCTAGCTGGTACAGTAGTGATGGATTTGCTGATCTGGCCTCATCTAATGTGGCTAGTTTAAAGCTTAATCCCTCACCTAGCACACGCCTTGGATTTCATGGTTATTGGCTGGAAGGGAGACTGGAAAAGCCGAGGCTTTGGTCTGCTGAGCAAGGGCTCTTGATTTGTTGTTTCTTTTTGTTTCTTCCCGTCTTGTTATTAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 ko00511 ko00600 ko01100 map00052 map00511 map00600 map01100
Pfam Domains
Protein Families
Bgal_small_N DUF4981 Glyco_hydro_2 Glyco_hydro_2_C Glyco_hydro_2_N

Protein Analysis

187

Amino Acids

21.32

Weight (kDa)

4.91

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_2_N PF02837 6 - 66 1.3e-18 Glycosyl hydrolases family 2, sugar binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019289)

Species Orthologous Gene IDs
malus_domestica MD07G1039900.v1.1 MD07G1040000.v1.1
rosa_chinensis RchiOBHm_Chr1g0324211
rosa_laevigata RLG00000030215
rosa_multiflora Rmu_sc0001850.1_g000039
rosa_samantha Rh1CG062400 Rh1CG062700 Rh1DG066500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 2 cut(s) 76, 365
AgsI TTSAA 4 cut(s) 47, 104, 137, 226
AluBI AGCT 4 cut(s) 98, 338, 360, 418
AluI AGCT 4 cut(s) 98, 338, 360, 418
Alw26I GTCTC 1 cut(s) 466
AoxI GGCC 2 cut(s) 237, 390
ApoI RAATTY 1 cut(s) 41
AsuHPI GGTGA 2 cut(s) 43, 420
AsuNHI GCTAGC 1 cut(s) 356
BaeI ACNNNNGTAYC 2 cut(s) 355, 388
BanII GRGCYC 1 cut(s) 513
BccI CCATC 4 cut(s) 76, 108, 116, 368
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 3 cut(s) 357, 408, 432
BlpI GCTNAGC 1 cut(s) 501
BmtI GCTAGC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 274
Bpu1102I GCTNAGC 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 240, 442, 485
Bse1I ACTGG 2 cut(s) 72, 480
Bse3DI GCAATG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 240, 442, 485
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 144
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 32, 492
BseNI ACTGG 2 cut(s) 72, 480
BshFI GGCC 2 cut(s) 239, 392
BsmAI GTCTC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 2 cut(s) 239, 392
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 3 cut(s) 139, 145, 385
Bsp1720I GCTNAGC 1 cut(s) 501
BspANI GGCC 2 cut(s) 239, 392
BspCNI CTCAG 2 cut(s) 31, 493
BspOI GCTAGC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 2 cut(s) 72, 480
BssECI CCNNGG 3 cut(s) 240, 442, 485
BssMI GATC 3 cut(s) 139, 145, 385
BssT1I CCWWGG 1 cut(s) 442
Bst4CI ACNGT 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 2 cut(s) 18, 501
BstF5I GGATG 1 cut(s) 68
BstKTI GATC 3 cut(s) 142, 148, 388
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 3 cut(s) 139, 145, 385
BstMWI GCNNNNNNNGC 1 cut(s) 389
BsuRI GGCC 2 cut(s) 239, 392
BtsCI GGATG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 358
Csp6I GTAC 2 cut(s) 75, 364
CviAII CATG 3 cut(s) 5, 352, 452
CviQI GTAC 2 cut(s) 75, 364
DdeI CTNAG 2 cut(s) 18, 501
DpnI GATC 3 cut(s) 141, 147, 387
DpnII GATC 3 cut(s) 139, 145, 385
DraI TTTAAA 1 cut(s) 414
EaeI YGGCCR 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 3 cut(s) 8, 355, 455
FaiI YATR 6 cut(s) 6, 60, 255, 263, 353, 453
FatI CATG 3 cut(s) 4, 351, 451
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 513
FspBI CTAG 3 cut(s) 357, 408, 432
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 2 cut(s) 239, 392
Hin1II CATG 3 cut(s) 8, 355, 455
HindIII AAGCTT 2 cut(s) 336, 416
HphI GGTGA 2 cut(s) 43, 420
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 5 cut(s) 20, 143, 173, 291, 514
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4V TGCA 3 cut(s) 4, 212, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 2 cut(s) 18, 501
Hsp92II CATG 3 cut(s) 8, 355, 455
Kzo9I GATC 3 cut(s) 139, 145, 385
MaeI CTAG 3 cut(s) 357, 408, 432
MaeIII GTNAC 1 cut(s) 13
MalI GATC 3 cut(s) 141, 147, 387
MboI GATC 3 cut(s) 139, 145, 385
MboII GAAGA 2 cut(s) 149, 530
MhlI GDGCHC 1 cut(s) 513
MluCI AATT 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 4 cut(s) 235, 403, 436, 480
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 413, 420, 554
MslI CAYNNNNRTG 1 cut(s) 174
Mva1269I GAATGC 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 3 cut(s) 139, 145, 385
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 3 cut(s) 8, 355, 455
NmeAIII GCCGAG 2 cut(s) 265, 510
NmuCI GTSAC 1 cut(s) 13
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 165
PsrI GAACNNNNNNTAC 2 cut(s) 84, 116
RsaI GTAC 2 cut(s) 76, 365
RsaNI GTAC 2 cut(s) 75, 364
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 3 cut(s) 413, 420, 554
Sau3AI GATC 3 cut(s) 139, 145, 385
SduI GDGCHC 1 cut(s) 513
SetI ASST 9 cut(s) 100, 135, 204, 270, 340, 362, 420, 433, 560
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 1 cut(s) 41
SspMI CTAG 3 cut(s) 357, 408, 432
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 368
TasI AATT 1 cut(s) 41
TatI WGTACW 1 cut(s) 74
Tru1I TTAA 3 cut(s) 413, 420, 554
Tru9I TTAA 3 cut(s) 413, 420, 554
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 4 cut(s) 158, 196, 330, 440
XapI RAATTY 1 cut(s) 41
XspI CTAG 3 cut(s) 357, 408, 432
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.