Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0017587

Physical Location & Seq

Genomic Coordinates Reverse (-)

4022718 .. 4023492

Gene Structure 775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1046800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAATGAGTACATAGGAGCCACCGGAATTCCTATAACATTTGACTCTGTACCGATTGACAGTGAGATCAACTTCCATTTCATACTCGGGTTTGCGATTGATGCAGACCGATCATGCATGCAACAAAATGGGATATTCTCACCATATTGGCAATCTACATTAACCCCACAATCTGTTGCAGCCATCAAGCAAAAACACTCTAATGTGAAAGTCATGGTAAGCCTCTCAGGTTGGAGCTTGGGTGAAAGTCCTTCACTGCTCATCACTGGCTTGAAAAACAAAGGACTCATTTCTGTTGCTAGTATTGCACCGTTTTACAGTACAACTGCGCCGTATGTTCAGCTCTTTGATGGCTATGCAGATGTTATAGACTATGTCAATCACCAGTTCTACACTGATAAGGTTACTACCGCGAAGGGGTATCTGCAAGCGTTCAAGCTTCGAGCCGCACAATTTGGGAAGGAAAAGTTGTTGCCTGCCTATGAAGTAGATGGAAGAGGAATTCAAGGGGATGCCTTTTTTGATGCTTTGACACTGTTGCAGACAAATGGATTCGAAATTAATGGGGTCATGATCTTCTCAGCGGATGCTTCTTCTAAAAACAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

204

Amino Acids

22.25

Weight (kDa)

5.27

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24210
malus_domestica	MD02G1278700.v1.1 MD07G1046800.v1.1
prunus_persica	Prupe.2G041800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0120651
rosa_laevigata	RLG00000018564
rosa_rugosa	Rorug02G0230100
rosa_samantha	Rh2AG286100 Rh2BG297900 Rh2CG275600 Rh2DG311600
rosa_wichuraiana	Rw2G022980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	413
AciI	CCGC	3 cut(s)	411, 447, 584
AcsI	RAATTY	2 cut(s)	27, 501
AfaI	GTAC	3 cut(s)	11, 51, 322
AfiI	CCNNNNNNNGG	1 cut(s)	417
AgsI	TTSAA	3 cut(s)	274, 436, 506
AluBI	AGCT	3 cut(s)	237, 343, 439
AluI	AGCT	3 cut(s)	237, 343, 439
Ama87I	CYCGRG	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	2 cut(s)	27, 501
AseI	ATTAAT	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	331
AsuHPI	GGTGA	3 cut(s)	132, 254, 374
AsuII	TTCGAA	1 cut(s)	555
AvaI	CYCGRG	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	3 cut(s)	191, 344, 485
BceAI	ACGGC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	300
BisI	GCNGC	2 cut(s)	180, 447
BlsI	GCNGC	2 cut(s)	181, 448
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	19
BmsI	GCATC	4 cut(s)	91, 502, 514, 577
Bpu14I	TTCGAA	1 cut(s)	555
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	271, 385
BseGI	GGATG	2 cut(s)	517, 592
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	240, 594
BseNI	ACTGG	2 cut(s)	271, 385
BseXI	GCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	417
BsoBI	CYCGRG	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	555
Bsp143I	GATC	3 cut(s)	66, 110, 573
BspACI	CCGC	3 cut(s)	411, 447, 584
BspCNI	CTCAG	2 cut(s)	239, 593
BspFNI	CGCG	1 cut(s)	413
BspHI	TCATGA	1 cut(s)	570
BspLI	GGNNCC	1 cut(s)	19
BspT104I	TTCGAA	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	271, 385
BssMI	GATC	3 cut(s)	66, 110, 573
Bst4CI	ACNGT	4 cut(s)	62, 312, 320, 537
Bst6I	CTCTTC	1 cut(s)	490
BstBI	TTCGAA	1 cut(s)	555
BstC8I	GCNNGC	3 cut(s)	119, 429, 477
BstDEI	CTNAG	2 cut(s)	226, 580
BstF5I	GGATG	2 cut(s)	517, 592
BstFNI	CGCG	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	3 cut(s)	69, 113, 576
BstMBI	GATC	3 cut(s)	66, 110, 573
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 305
BstNSI	RCATGY	1 cut(s)	121
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	517, 592
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	5 cut(s)	67, 254, 264, 393, 533
Cac8I	GCNNGC	3 cut(s)	119, 429, 477
CciI	TCATGA	1 cut(s)	570
CfoI	GCGC	1 cut(s)	331
Csp6I	GTAC	3 cut(s)	10, 50, 321
CviAII	CATG	4 cut(s)	114, 118, 214, 571
CviJI	RGCY	9 cut(s)	20, 182, 222, 237, 270, 343, 354, 439, 446
CviKI_1	RGCY	9 cut(s)	20, 182, 222, 237, 270, 343, 354, 439, 446
CviQI	GTAC	3 cut(s)	10, 50, 321
DdeI	CTNAG	2 cut(s)	226, 580
DpnI	GATC	3 cut(s)	68, 112, 575
DpnII	GATC	3 cut(s)	66, 110, 573
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
Eco88I	CYCGRG	1 cut(s)	86
EcoRI	GAATTC	2 cut(s)	27, 501
EcoT22I	ATGCAT	1 cut(s)	119
FaeI	CATG	4 cut(s)	117, 121, 217, 574
FatI	CATG	4 cut(s)	113, 117, 213, 570
Fnu4HI	GCNGC	2 cut(s)	180, 447
FokI	GGATG	2 cut(s)	524, 599
Fsp4HI	GCNGC	2 cut(s)	180, 447
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	2 cut(s)	180, 447
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	4 cut(s)	117, 121, 217, 574
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	3 cut(s)	44, 285, 552
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	3 cut(s)	132, 254, 374
Hpy188III	TCNNGA	1 cut(s)	571
HpyAV	CCTTC	3 cut(s)	261, 409, 454
HpyCH4III	ACNGT	4 cut(s)	62, 312, 320, 537
HpyCH4V	TGCA	8 cut(s)	104, 117, 121, 179, 308, 359, 427, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 305
HpyF3I	CTNAG	2 cut(s)	226, 580
Hsp92II	CATG	4 cut(s)	117, 121, 217, 574
HspAI	GCGC	1 cut(s)	329
Kzo9I	GATC	3 cut(s)	66, 110, 573
LmnI	GCTCC	2 cut(s)	17, 234
LpnPI	CCDG	5 cut(s)	37, 213, 252, 398, 489
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	4 cut(s)	91, 502, 514, 577
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	68, 112, 575
MboI	GATC	3 cut(s)	66, 110, 573
MboII	GAAGA	3 cut(s)	507, 568, 585
MluCI	AATT	4 cut(s)	27, 452, 501, 558
MlyI	GAGTC	2 cut(s)	38, 279
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	2 cut(s)	233, 491
Mph1103I	ATGCAT	1 cut(s)	119
MseI	TTAA	3 cut(s)	161, 561, 610
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	2 cut(s)	101, 305
NdeII	GATC	3 cut(s)	66, 110, 573
NlaIII	CATG	4 cut(s)	117, 121, 217, 574
NlaIV	GGNNCC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	119
NspI	RCATGY	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	555
PaeI	GCATGC	1 cut(s)	121
PagI	TCATGA	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	552
PflFI	GACNNNGTC	1 cut(s)	374
PkrI	GCNGC	2 cut(s)	181, 448
PleI	GAGTC	2 cut(s)	38, 279
PpsI	GAGTC	2 cut(s)	38, 279
PshBI	ATTAAT	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	374
RsaI	GTAC	3 cut(s)	11, 51, 322
RsaNI	GTAC	3 cut(s)	10, 50, 321
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	161, 561, 610
SatI	GCNGC	2 cut(s)	180, 447
Sau3AI	GATC	3 cut(s)	66, 110, 573
SchI	GAGTC	2 cut(s)	38, 279
SetI	ASST	5 cut(s)	232, 239, 345, 405, 441
SfaNI	GCATC	4 cut(s)	91, 502, 514, 577
SfuI	TTCGAA	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	201
SphI	GCATGC	1 cut(s)	121
Sse9I	AATT	4 cut(s)	27, 452, 501, 558
SsiI	CCGC	3 cut(s)	411, 447, 584
SspMI	CTAG	1 cut(s)	300
TaaI	ACNGT	4 cut(s)	62, 312, 320, 537
TaqI	TCGA	2 cut(s)	442, 555
TaqII	GACCGA	1 cut(s)	123
TasI	AATT	4 cut(s)	27, 452, 501, 558
TatI	WGTACW	2 cut(s)	9, 320
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	1 cut(s)	552
Tru1I	TTAA	3 cut(s)	161, 561, 610
Tru9I	TTAA	3 cut(s)	161, 561, 610
TscAI	CASTG	5 cut(s)	67, 261, 271, 400, 540
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	17, 70, 498
TspRI	CASTG	5 cut(s)	67, 261, 271, 400, 540
Tth111I	GACNNNGTC	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	561
XapI	RAATTY	2 cut(s)	27, 501
XceI	RCATGY	1 cut(s)	121
XspI	CTAG	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.