Rh2BG297900

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017587
Physical Location & Seq
Forward (+)
34018152 .. 34018973
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG297900.1

Sequence Viewer

Length: 822 bp
ATGGAGTACATTGGAGCCACTGGTGTTTCGGTATCATTTGACGATGTACCAATTAATGATGGAATCGACTTTCATTTCATACTTGGCTTTGCTGTTGATGCAGATGAATCAGGCAACTTCCAAAACGGAAAATTTTCACCATATTGGATACCTGAATTAACCCCAATGTCTGTTGCAGCTATAAAAAAAGCCCACCCTAACGTAAAAGTCATGGTAAGCCTGTCTGGTTGGAGTATAGGCACGAAAACCTTACACTGGTACATCCCAGAAAACTCCGAAAAATGGATAAGTAATGCCGTCTCATCTCTCACTTCCATCATCACCACTTACCATCTTGATGGCATTGACATAGACTACGAAAAGTTCCGCAACAGTTCTAAAACTAATGCTAATTTTGCTTATTGCATTGGCGAGCTTATCACACGTTTGAAAGACCAGGGTGTCATTTCCGTGGCCAGCATTGCACCGTTTTACAGCACAGTTGCGCCTTACATTGCACTCTATCAGGGTTATGGACATGCCATAGACTATGTCAATCACCAGTTCTACACTGACAAGGTAAAGACCCCGAAAGGATATTTGAAGGCCTTCGAGCTACGAGCCAACCAATTTGACAAGACAAAGCTGTTGCCAGCCTATGAAGTGAACGGAAGAGGAATTCAGGGTGATCTTTTCTTTGATGCTTTAAGCCTATTGGAGGAAAATGGATTCCTAATTAATGGGGTGATGATCTTCTCAGCTGATGCTTCTTCTGAGAATAAGTATCACTATGAGAGGAAATCACAAGCTTTCTTGCTCAATTCTACTAGTACATCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

273

Amino Acids

30.43

Weight (kDa)

5.48

Isoelectric Point (pI)

18.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 48 - 183 5.4e-12 Glycosyl hydrolases family 18
TIM-barrel_EndoS PF23916 81 - 198 2.4e-06 Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017587)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24210
malus_domestica MD02G1278700.v1.1 MD07G1046800.v1.1
prunus_persica Prupe.2G041800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0120651
rosa_laevigata RLG00000018564
rosa_rugosa Rorug02G0230100
rosa_samantha Rh2AG286100 Rh2BG297900 Rh2CG275600 Rh2DG311600
rosa_wichuraiana Rw2G022980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 440
AciI CCGC 1 cut(s) 367
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 2 cut(s) 131, 657
AfaI GTAC 4 cut(s) 8, 48, 260, 811
AfiI CCNNNNNNNGG 3 cut(s) 255, 282, 697
AflIII ACRYGT 1 cut(s) 422
AgsI TTSAA 2 cut(s) 430, 583
AhlI ACTAGT 1 cut(s) 806
AjnI CCWGG 1 cut(s) 435
AluBI AGCT 6 cut(s) 179, 415, 595, 625, 740, 788
AluI AGCT 6 cut(s) 179, 415, 595, 625, 740, 788
Alw26I GTCTC 1 cut(s) 304
AoxI GGCC 2 cut(s) 453, 585
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 2 cut(s) 131, 657
AseI ATTAAT 2 cut(s) 54, 717
Asp700I GAANNNNTTC 2 cut(s) 133, 587
AspLEI GCGC 1 cut(s) 487
AsuHPI GGTGA 5 cut(s) 129, 313, 530, 677, 736
BalI TGGCCA 1 cut(s) 455
BbvI GCAGC 1 cut(s) 188
BccI CCATC 4 cut(s) 53, 323, 332, 339
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 437
BciVI GTATCC 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 304
BcuI ACTAGT 1 cut(s) 806
BfaI CTAG 1 cut(s) 807
BfuI GTATCC 1 cut(s) 141
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 437
BmsI GCATC 3 cut(s) 88, 670, 733
BsaJI CCNNGG 2 cut(s) 436, 450
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 282, 697
Bse1I ACTGG 3 cut(s) 25, 260, 541
Bse3DI GCAATG 2 cut(s) 459, 492
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 2 cut(s) 436, 450
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 3 cut(s) 255, 282, 697
BseMI GCAATG 2 cut(s) 459, 492
BseMII CTCAG 2 cut(s) 744, 750
BseNI ACTGG 3 cut(s) 25, 260, 541
BseXI GCAGC 1 cut(s) 188
BshFI GGCC 2 cut(s) 455, 587
BslI CCNNNNNNNGG 3 cut(s) 255, 282, 697
BsmAI GTCTC 1 cut(s) 304
BsmBI CGTCTC 1 cut(s) 304
BsnI GGCC 2 cut(s) 455, 587
Bsp143I GATC 2 cut(s) 667, 729
BspACI CCGC 1 cut(s) 367
BspANI GGCC 2 cut(s) 455, 587
BspCNI CTCAG 2 cut(s) 745, 749
BspLI GGNNCC 1 cut(s) 16
BsrDI GCAATG 2 cut(s) 459, 492
BsrI ACTGG 3 cut(s) 25, 260, 541
BssECI CCNNGG 2 cut(s) 436, 450
BssMI GATC 2 cut(s) 667, 729
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 3 cut(s) 374, 468, 481
Bst6I CTCTTC 1 cut(s) 646
BstC8I GCNNGC 3 cut(s) 413, 457, 633
BstDEI CTNAG 2 cut(s) 736, 753
BstDSI CCRYGG 1 cut(s) 450
BstENI CCTNNNNNAGG 1 cut(s) 695
BstF5I GGATG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 2 cut(s) 670, 732
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 2 cut(s) 667, 729
BstMWI GCNNNNNNNGC 3 cut(s) 98, 395, 461
BstNI CCWGG 1 cut(s) 437
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 338
BsuI GTATCC 1 cut(s) 141
BsuRI GGCC 2 cut(s) 455, 587
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 18, 253, 549
Cac8I GCNNGC 3 cut(s) 413, 457, 633
CfoI GCGC 1 cut(s) 487
Csp6I GTAC 4 cut(s) 7, 47, 259, 810
CviAII CATG 2 cut(s) 211, 518
CviQI GTAC 4 cut(s) 7, 47, 259, 810
DdeI CTNAG 2 cut(s) 736, 753
DpnI GATC 2 cut(s) 669, 731
DpnII GATC 2 cut(s) 667, 729
DrdI GACNNNNNNGTC 1 cut(s) 440
DseDI GACNNNNNNGTC 1 cut(s) 440
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 646
EarI CTCTTC 1 cut(s) 646
Eco147I AGGCCT 1 cut(s) 587
EcoNI CCTNNNNNAGG 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 657
EcoRII CCWGG 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 2 cut(s) 214, 521
FatI CATG 2 cut(s) 210, 517
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 807
GlaI GCGC 1 cut(s) 486
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 455, 587
HhaI GCGC 1 cut(s) 487
Hin1II CATG 2 cut(s) 214, 521
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 3 cut(s) 63, 107, 708
HphI GGTGA 5 cut(s) 129, 313, 530, 677, 736
Hpy166II GTNNAC 1 cut(s) 646
Hpy188I TCNGA 2 cut(s) 277, 754
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 1 cut(s) 646
HpyAV CCTTC 2 cut(s) 577, 598
HpyCH4III ACNGT 3 cut(s) 374, 468, 481
HpyCH4IV ACGT 2 cut(s) 201, 424
HpyCH4V TGCA 5 cut(s) 101, 176, 405, 464, 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 395, 461
HpyF3I CTNAG 2 cut(s) 736, 753
HpySE526I ACGT 2 cut(s) 201, 424
Hsp92II CATG 2 cut(s) 214, 521
HspAI GCGC 1 cut(s) 485
Kzo9I GATC 2 cut(s) 667, 729
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 3 cut(s) 88, 670, 733
MaeI CTAG 1 cut(s) 807
MaeII ACGT 2 cut(s) 201, 424
MalI GATC 2 cut(s) 669, 731
MboI GATC 2 cut(s) 667, 729
MboII GAAGA 3 cut(s) 663, 724, 741
MlsI TGGCCA 1 cut(s) 455
MluCI AATT 8 cut(s) 51, 131, 155, 391, 608, 657, 714, 799
MluNI TGGCCA 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 3 cut(s) 647, 691, 768
Mox20I TGGCCA 1 cut(s) 455
MroXI GAANNNNTTC 2 cut(s) 133, 587
MscI TGGCCA 1 cut(s) 455
MseI TTAA 4 cut(s) 54, 158, 686, 717
MslI CAYNNNNRTG 2 cut(s) 336, 449
Msp20I TGGCCA 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 740
MspR9I CCNGG 1 cut(s) 437
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 3 cut(s) 98, 395, 461
NdeII GATC 2 cut(s) 667, 729
NlaIII CATG 2 cut(s) 214, 521
NlaIV GGNNCC 1 cut(s) 16
NspI RCATGY 1 cut(s) 521
PceI AGGCCT 1 cut(s) 587
PdmI GAANNNNTTC 2 cut(s) 133, 587
PfeI GAWTC 3 cut(s) 63, 107, 708
PflFI GACNNNGTC 1 cut(s) 530
PkrI GCNGC 1 cut(s) 178
PshBI ATTAAT 2 cut(s) 54, 717
Psp6I CCWGG 1 cut(s) 435
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 530
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 4 cut(s) 8, 48, 260, 811
RsaNI GTAC 4 cut(s) 7, 47, 259, 810
RseI CAYNNNNRTG 2 cut(s) 336, 449
SaqAI TTAA 4 cut(s) 54, 158, 686, 717
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 667, 729
ScrFI CCNGG 1 cut(s) 437
SfaNI GCATC 3 cut(s) 88, 670, 733
SmiMI CAYNNNNRTG 2 cut(s) 336, 449
SpeI ACTAGT 1 cut(s) 806
Sse9I AATT 8 cut(s) 51, 131, 155, 391, 608, 657, 714, 799
SseBI AGGCCT 1 cut(s) 587
SsiI CCGC 1 cut(s) 367
SspMI CTAG 1 cut(s) 807
StuI AGGCCT 1 cut(s) 587
StyD4I CCNGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 374, 468, 481
TaiI ACGT 2 cut(s) 204, 427
TaqI TCGA 2 cut(s) 66, 591
TasI AATT 8 cut(s) 51, 131, 155, 391, 608, 657, 714, 799
TatI WGTACW 2 cut(s) 6, 809
TfiI GAWTC 3 cut(s) 63, 107, 708
Tru1I TTAA 4 cut(s) 54, 158, 686, 717
Tru9I TTAA 4 cut(s) 54, 158, 686, 717
TscAI CASTG 3 cut(s) 25, 260, 556
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 4 cut(s) 62, 67, 120, 654
TspGWI ACGGA 3 cut(s) 141, 439, 663
TspRI CASTG 3 cut(s) 25, 260, 556
Tth111I GACNNNGTC 1 cut(s) 530
VspI ATTAAT 2 cut(s) 54, 717
XagI CCTNNNNNAGG 1 cut(s) 695
XapI RAATTY 2 cut(s) 131, 657
XceI RCATGY 1 cut(s) 521
XmnI GAANNNNTTC 2 cut(s) 133, 587
XspI CTAG 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.