Rh2DG311600

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017587
Physical Location & Seq
Forward (+)
38252034 .. 38252858
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG311600.1

Sequence Viewer

Length: 825 bp
ATGATGGAGTACATTGGAGCCACTGGTGTTTCGGTATCATTTGACGATGTACCAATTAATGATGGAATCGACTTTCATTTCATACTTGGCTTTGCTGTTGATGCAGATGAATCAGGCAACTTCCAAAACGGAAAATTTTCACCATATTGGATACCTGAATTAACCCCAATGTCTGTTGCAGCTATAAAAAAAGCCCACCCTAACGTAAAAGTCATGGTAAGCCTGTCTGGTTGGAGTATAGGCACGAAAACCTTGCACTGGTACATCCCAGAAAACTCCGAAAAATGGATAAGTAATGCCGTCTCATCTCTCACTTCCATCATCACCACTTACCATCTTGATGGCATTGACATAGACTACGAAAAGTTCCGCAACAGTTCTAAAACTAATGCTAATTTTGCTTATTGCATTGGCGAGCTTATCACACGTTTGAAAGACCAGGGTGTCATTTCCGTGGCCAGCATTGCACCGTTTTACAGCACAGTTGCGCCTTACATTGCACTCTATCAGGGTTATGGACATGCCATAGACTACGTCAATCACCAGTTCTACACTGACAAGGTAAAGACTCCGAAAGGATATTTGAAGGCCTTCGAGCTACGAGCCAACCAATTTGACAAGACAAAGCTGTTGCCAGCCTATGAAGTGAACGGAAGAGGAATTCAGGGCGATCTTTTCTTTGATGCTTTAAGCCTATTGGAGGAAAATGGATTCCTAATTAATGGGGTGATGATCTTCTCAGCTGATGCTTCTTCTGAGAATAAGTATCACTATGAGAGGAAATCACAAGCTTTCTTGCTCAATTCTACTAGTACATCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

274

Amino Acids

30.56

Weight (kDa)

5.48

Isoelectric Point (pI)

18.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 49 - 184 5.4e-12 Glycosyl hydrolases family 18
TIM-barrel_EndoS PF23916 82 - 199 2.4e-06 Endo-beta-N-acetylglucosaminidase EndoS TIM-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017587)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24210
malus_domestica MD02G1278700.v1.1 MD07G1046800.v1.1
prunus_persica Prupe.2G041800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0120651
rosa_laevigata RLG00000018564
rosa_rugosa Rorug02G0230100
rosa_samantha Rh2AG286100 Rh2BG297900 Rh2CG275600 Rh2DG311600
rosa_wichuraiana Rw2G022980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 443
AciI CCGC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 2 cut(s) 134, 660
AfaI GTAC 4 cut(s) 11, 51, 263, 814
AfiI CCNNNNNNNGG 3 cut(s) 258, 285, 700
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 2 cut(s) 433, 586
AhlI ACTAGT 1 cut(s) 809
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 6 cut(s) 182, 418, 598, 628, 743, 791
AluI AGCT 6 cut(s) 182, 418, 598, 628, 743, 791
Alw26I GTCTC 1 cut(s) 307
AoxI GGCC 2 cut(s) 456, 588
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 2 cut(s) 134, 660
AseI ATTAAT 2 cut(s) 57, 720
Asp700I GAANNNNTTC 2 cut(s) 136, 590
AspLEI GCGC 1 cut(s) 490
AsuHPI GGTGA 4 cut(s) 132, 316, 533, 739
BalI TGGCCA 1 cut(s) 458
BbvI GCAGC 1 cut(s) 191
BccI CCATC 4 cut(s) 56, 326, 335, 342
BceAI ACGGC 1 cut(s) 284
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 1 cut(s) 440
BciVI GTATCC 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 307
BcuI ACTAGT 1 cut(s) 809
BfaI CTAG 1 cut(s) 810
BfuI GTATCC 1 cut(s) 144
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 440
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 3 cut(s) 91, 673, 736
BsaJI CCNNGG 2 cut(s) 439, 453
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 285, 700
Bse1I ACTGG 3 cut(s) 28, 263, 544
Bse3DI GCAATG 2 cut(s) 462, 495
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 2 cut(s) 439, 453
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 3 cut(s) 258, 285, 700
BseMI GCAATG 2 cut(s) 462, 495
BseMII CTCAG 2 cut(s) 747, 753
BseNI ACTGG 3 cut(s) 28, 263, 544
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 2 cut(s) 458, 590
BslI CCNNNNNNNGG 3 cut(s) 258, 285, 700
BsmAI GTCTC 1 cut(s) 307
BsmBI CGTCTC 1 cut(s) 307
BsnI GGCC 2 cut(s) 458, 590
Bsp143I GATC 2 cut(s) 670, 732
BspACI CCGC 1 cut(s) 370
BspANI GGCC 2 cut(s) 458, 590
BspCNI CTCAG 2 cut(s) 748, 752
BspLI GGNNCC 1 cut(s) 19
BsrDI GCAATG 2 cut(s) 462, 495
BsrI ACTGG 3 cut(s) 28, 263, 544
BssECI CCNNGG 2 cut(s) 439, 453
BssMI GATC 2 cut(s) 670, 732
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 3 cut(s) 377, 471, 484
Bst6I CTCTTC 1 cut(s) 649
BstC8I GCNNGC 3 cut(s) 416, 460, 636
BstDEI CTNAG 2 cut(s) 739, 756
BstDSI CCRYGG 1 cut(s) 453
BstENI CCTNNNNNAGG 1 cut(s) 698
BstF5I GGATG 1 cut(s) 264
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 2 cut(s) 673, 735
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 2 cut(s) 670, 732
BstMWI GCNNNNNNNGC 3 cut(s) 101, 398, 464
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 191
BstXI CCANNNNNNTGG 1 cut(s) 341
BsuI GTATCC 1 cut(s) 144
BsuRI GGCC 2 cut(s) 458, 590
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 3 cut(s) 21, 256, 552
Cac8I GCNNGC 3 cut(s) 416, 460, 636
CfoI GCGC 1 cut(s) 490
Csp6I GTAC 4 cut(s) 10, 50, 262, 813
CviAII CATG 2 cut(s) 214, 521
CviQI GTAC 4 cut(s) 10, 50, 262, 813
DdeI CTNAG 2 cut(s) 739, 756
DpnI GATC 2 cut(s) 672, 734
DpnII GATC 2 cut(s) 670, 732
DrdI GACNNNNNNGTC 1 cut(s) 443
DseDI GACNNNNNNGTC 1 cut(s) 443
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 649
EarI CTCTTC 1 cut(s) 649
Eco147I AGGCCT 1 cut(s) 590
EcoNI CCTNNNNNAGG 1 cut(s) 698
EcoRI GAATTC 1 cut(s) 660
EcoRII CCWGG 1 cut(s) 438
Esp3I CGTCTC 1 cut(s) 307
FaeI CATG 2 cut(s) 217, 524
FatI CATG 2 cut(s) 213, 520
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 810
GlaI GCGC 1 cut(s) 489
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 2 cut(s) 458, 590
HhaI GCGC 1 cut(s) 490
Hin1II CATG 2 cut(s) 217, 524
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 4 cut(s) 66, 110, 568, 711
HphI GGTGA 4 cut(s) 132, 316, 533, 739
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 3 cut(s) 280, 573, 757
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 1 cut(s) 649
HpyAV CCTTC 2 cut(s) 580, 601
HpyCH4III ACNGT 3 cut(s) 377, 471, 484
HpyCH4IV ACGT 3 cut(s) 204, 427, 534
HpyCH4V TGCA 6 cut(s) 104, 179, 256, 408, 467, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 398, 464
HpyF3I CTNAG 2 cut(s) 739, 756
HpySE526I ACGT 3 cut(s) 204, 427, 534
Hsp92II CATG 2 cut(s) 217, 524
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 2 cut(s) 670, 732
LmnI GCTCC 1 cut(s) 17
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 3 cut(s) 91, 673, 736
MaeI CTAG 1 cut(s) 810
MaeII ACGT 3 cut(s) 204, 427, 534
MalI GATC 2 cut(s) 672, 734
MboI GATC 2 cut(s) 670, 732
MboII GAAGA 3 cut(s) 666, 727, 744
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 8 cut(s) 54, 134, 158, 394, 611, 660, 717, 802
MluNI TGGCCA 1 cut(s) 458
MlyI GAGTC 1 cut(s) 562
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 3 cut(s) 650, 694, 771
Mox20I TGGCCA 1 cut(s) 458
MroXI GAANNNNTTC 2 cut(s) 136, 590
MscI TGGCCA 1 cut(s) 458
MseI TTAA 4 cut(s) 57, 161, 689, 720
MslI CAYNNNNRTG 2 cut(s) 339, 452
Msp20I TGGCCA 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 743
MspR9I CCNGG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 101, 398, 464
NdeII GATC 2 cut(s) 670, 732
NlaIII CATG 2 cut(s) 217, 524
NlaIV GGNNCC 1 cut(s) 19
NspI RCATGY 1 cut(s) 524
PceI AGGCCT 1 cut(s) 590
PdmI GAANNNNTTC 2 cut(s) 136, 590
PfeI GAWTC 3 cut(s) 66, 110, 711
PflFI GACNNNGTC 1 cut(s) 533
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PshBI ATTAAT 2 cut(s) 57, 720
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 533
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 4 cut(s) 11, 51, 263, 814
RsaNI GTAC 4 cut(s) 10, 50, 262, 813
RseI CAYNNNNRTG 2 cut(s) 339, 452
SaqAI TTAA 4 cut(s) 57, 161, 689, 720
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 670, 732
SchI GAGTC 1 cut(s) 562
ScrFI CCNGG 1 cut(s) 440
SfaNI GCATC 3 cut(s) 91, 673, 736
SmiMI CAYNNNNRTG 2 cut(s) 339, 452
SpeI ACTAGT 1 cut(s) 809
Sse9I AATT 8 cut(s) 54, 134, 158, 394, 611, 660, 717, 802
SseBI AGGCCT 1 cut(s) 590
SsiI CCGC 1 cut(s) 370
SspMI CTAG 1 cut(s) 810
StuI AGGCCT 1 cut(s) 590
StyD4I CCNGG 1 cut(s) 438
TaaI ACNGT 3 cut(s) 377, 471, 484
TaiI ACGT 3 cut(s) 207, 430, 537
TaqI TCGA 2 cut(s) 69, 594
TasI AATT 8 cut(s) 54, 134, 158, 394, 611, 660, 717, 802
TatI WGTACW 2 cut(s) 9, 812
TfiI GAWTC 3 cut(s) 66, 110, 711
Tru1I TTAA 4 cut(s) 57, 161, 689, 720
Tru9I TTAA 4 cut(s) 57, 161, 689, 720
TscAI CASTG 3 cut(s) 28, 263, 559
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 4 cut(s) 65, 70, 123, 657
TspGWI ACGGA 3 cut(s) 144, 442, 666
TspRI CASTG 3 cut(s) 28, 263, 559
Tth111I GACNNNGTC 1 cut(s) 533
VspI ATTAAT 2 cut(s) 57, 720
XagI CCTNNNNNAGG 1 cut(s) 698
XapI RAATTY 2 cut(s) 134, 660
XceI RCATGY 1 cut(s) 524
XmnI GAANNNNTTC 2 cut(s) 136, 590
XspI CTAG 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.