Prupe.2G041800_v2.0.a1

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017587
Physical Location & Seq
Reverse (-)
4574031 .. 4575302
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G041800.1

Sequence Viewer

Length: 906 bp
ATGACTCAACTTCAACTCTTTCTCCTTTATGTTGCTGCAGCTGCATTCATGTTTCAACAATTTTGTGATGGAAAGTTGATGATGGAGTACATTGGAGCCTCAGGAATTCCAATAAAATTTGACTCTGTACCAATTGAAGATGAAATTGACTTCAATTTCATACTCGGCTTTGCAATTGATGCAGATGCATCAGGCAATCCACAAAATGGGACATTCTCACCATACTGGGAGACTACATTAACCCCAAAATCTGTTGCGGCCATAAAGAAAAGCCACCCTAACGTAAAAGTCTTGGCAAGCCTCTCAGGTTGGAGCTTAGGCCAAACAGTCCTTCGTTGGTACAATCCAACAGACCCCAACTTATGGATATCCAATGCTGTCTCATCTCTTGGTTCCATAATCACCACTTACCATCTTGATGGCATTGACATAGACTACGAAAATTTCCCGAACCAGAAGAGCAGTAACTCATCAAGTTCTTTCGCTTTTTGCATCGGCGAGCTCATCACCCGTCTGAAAAAACAAAGGCTCATCTCAGTAGCTAGCATTGCTCCATTTTATAGTACGGCTGCGCCATATGTTCAACTTTTTAATGGTTATGGAGATGTTATAGACTATGTCAACCACCAGTTCTACACTGACAAGGTTAACACCCCAAAAGGGTATTTAGATGCCTACACATTTCGGGCCAAGCAATTTGGAAAGGATAAGTTGTTGCCTAGCTATGAAGTAAATGGAAGAGGGATTCAGGGGAATGCATTTTTTGATGCTTTGAGTCTGTTGGAGAAAAATGGCTTTGAAATTAATGGGGTCATGATCTTCTCAGCTGATGCTGCATCTACCAACAACTTTTACTATGAGAGAAAATCACAAGCTTTCTTGCTTAATTCTACTAATAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

302

Amino Acids

33.5

Weight (kDa)

5.23

Isoelectric Point (pI)

22.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017587)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24210
malus_domestica MD02G1278700.v1.1 MD07G1046800.v1.1
prunus_persica Prupe.2G041800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0120651
rosa_laevigata RLG00000018564
rosa_rugosa Rorug02G0230100
rosa_samantha Rh2AG286100 Rh2BG297900 Rh2CG275600 Rh2DG311600
rosa_wichuraiana Rw2G022980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 206, 363
AciI CCGC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 3 cut(s) 105, 116, 442
AfaI GTAC 4 cut(s) 89, 129, 341, 565
AfiI CCNNNNNNNGG 3 cut(s) 206, 363, 660
AgsI TTSAA 6 cut(s) 14, 56, 137, 154, 584, 800
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 7 cut(s) 41, 315, 502, 542, 723, 827, 875
AluI AGCT 7 cut(s) 41, 315, 502, 542, 723, 827, 875
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 2 cut(s) 224, 385
AoxI GGCC 3 cut(s) 258, 319, 687
ApeKI GCWGC 5 cut(s) 35, 38, 41, 569, 833
ApoI RAATTY 3 cut(s) 105, 116, 442
AseI ATTAAT 1 cut(s) 804
AspLEI GCGC 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 687
AsuHPI GGTGA 3 cut(s) 210, 394, 499
AsuNHI GCTAGC 1 cut(s) 542
AxyI CCTNAGG 1 cut(s) 100
BanII GRGCYC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 5 cut(s) 22, 28, 50, 556, 820
BccI CCATC 4 cut(s) 62, 76, 413, 420
BceAI ACGGC 1 cut(s) 582
BcoDI GTCTC 2 cut(s) 224, 385
BfaI CTAG 2 cut(s) 543, 720
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 6 cut(s) 36, 39, 42, 258, 570, 834
BlsI GCNGC 6 cut(s) 37, 40, 43, 259, 571, 835
BmgT120I GGNCC 1 cut(s) 687
BmiI GGNNCC 2 cut(s) 97, 394
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 8 cut(s) 169, 175, 197, 501, 661, 757, 820, 845
BmtI GCTAGC 1 cut(s) 546
BmuI ACTGGG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 363, 660
Bse1I ACTGG 2 cut(s) 230, 628
Bse21I CCTNAGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 546
BseLI CCNNNNNNNGG 3 cut(s) 206, 363, 660
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 4 cut(s) 114, 318, 549, 837
BseNI ACTGG 2 cut(s) 230, 628
BseXI GCAGC 5 cut(s) 22, 28, 50, 556, 820
BshFI GGCC 3 cut(s) 260, 321, 689
BsiHKAI GWGCWC 1 cut(s) 504
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 3 cut(s) 206, 363, 660
BsmAI GTCTC 2 cut(s) 224, 385
BsmFI GGGAC 1 cut(s) 223
BsmI GAATGC 2 cut(s) 44, 760
BsnI GGCC 3 cut(s) 260, 321, 689
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 1 cut(s) 816
BspACI CCGC 1 cut(s) 257
BspANI GGCC 3 cut(s) 260, 321, 689
BspCNI CTCAG 4 cut(s) 113, 317, 548, 836
BspHI TCATGA 1 cut(s) 813
BspLI GGNNCC 2 cut(s) 97, 394
BspMAI CTGCAG 1 cut(s) 40
BspOI GCTAGC 1 cut(s) 546
BspQI GCTCTTC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 546
BsrI ACTGG 2 cut(s) 230, 628
BssMI GATC 1 cut(s) 816
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 2 cut(s) 452, 733
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 3 cut(s) 298, 500, 544
BstDEI CTNAG 5 cut(s) 100, 304, 316, 535, 823
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 1 cut(s) 819
BstMAI GTCTC 2 cut(s) 224, 385
BstMBI GATC 1 cut(s) 816
BstMWI GCNNNNNNNGC 4 cut(s) 41, 179, 548, 833
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 5 cut(s) 22, 28, 50, 556, 820
BstXI CCANNNNNNTGG 1 cut(s) 419
Bsu36I CCTNAGG 1 cut(s) 100
BsuRI GGCC 3 cut(s) 260, 321, 689
BtsIMutI CAGTG 1 cut(s) 636
Cac8I GCNNGC 3 cut(s) 298, 500, 544
CciI TCATGA 1 cut(s) 813
CfoI GCGC 1 cut(s) 574
Cfr13I GGNCC 1 cut(s) 687
Csp6I GTAC 4 cut(s) 88, 128, 340, 564
CviAII CATG 2 cut(s) 49, 814
CviQI GTAC 4 cut(s) 88, 128, 340, 564
DdeI CTNAG 5 cut(s) 100, 304, 316, 535, 823
DpnI GATC 1 cut(s) 818
DpnII GATC 1 cut(s) 816
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 452, 733
EarI CTCTTC 2 cut(s) 452, 733
Ecl136II GAGCTC 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 504
Eco32I GATATC 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 502
Eco81I CCTNAGG 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 105
EcoRV GATATC 1 cut(s) 369
EcoT22I ATGCAT 2 cut(s) 190, 760
EcoT38I GRGCYC 1 cut(s) 504
FaeI CATG 2 cut(s) 52, 817
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 48, 813
FauNDI CATATG 1 cut(s) 577
Fnu4HI GCNGC 6 cut(s) 36, 39, 42, 258, 570, 834
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 6 cut(s) 36, 39, 42, 258, 570, 834
FspBI CTAG 2 cut(s) 543, 720
GlaI GCGC 1 cut(s) 573
GluI GCNGC 6 cut(s) 36, 39, 42, 258, 570, 834
HaeIII GGCC 3 cut(s) 260, 321, 689
HhaI GCGC 1 cut(s) 574
Hin1II CATG 2 cut(s) 52, 817
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HincII GTYRAC 2 cut(s) 622, 649
HindII GTYRAC 2 cut(s) 622, 649
HindIII AAGCTT 1 cut(s) 873
HinfI GANTC 4 cut(s) 4, 122, 745, 775
HpaI GTTAAC 1 cut(s) 649
HphI GGTGA 3 cut(s) 210, 394, 499
Hpy166II GTNNAC 2 cut(s) 622, 649
Hpy188I TCNGA 1 cut(s) 516
Hpy188III TCNNGA 4 cut(s) 102, 416, 448, 814
Hpy8I GTNNAC 2 cut(s) 622, 649
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 8 cut(s) 38, 44, 173, 182, 188, 492, 758, 836
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 179, 548, 833
HpyF3I CTNAG 5 cut(s) 100, 304, 316, 535, 823
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 2 cut(s) 52, 817
HspAI GCGC 1 cut(s) 572
KspAI GTTAAC 1 cut(s) 649
Kzo9I GATC 1 cut(s) 816
LguI GCTCTTC 1 cut(s) 452
LmnI GCTCC 3 cut(s) 95, 312, 556
LpnPI CCDG 7 cut(s) 87, 177, 211, 291, 467, 641, 734
Lsp1109I GCAGC 5 cut(s) 22, 28, 50, 556, 820
LweI GCATC 8 cut(s) 169, 175, 197, 501, 661, 757, 820, 845
MaeI CTAG 2 cut(s) 543, 720
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 464
MalI GATC 1 cut(s) 818
MboI GATC 1 cut(s) 816
MboII GAAGA 4 cut(s) 149, 469, 750, 811
MfeI CAATTG 2 cut(s) 132, 174
MhlI GDGCHC 1 cut(s) 504
MlyI GAGTC 2 cut(s) 116, 784
MmeI TCCRAC 3 cut(s) 290, 371, 762
MnlI CCTC 3 cut(s) 109, 311, 734
Mph1103I ATGCAT 2 cut(s) 190, 760
MseI TTAA 6 cut(s) 239, 591, 648, 804, 885, 904
MslI CAYNNNNRTG 1 cut(s) 417
MspA1I CMGCKG 2 cut(s) 41, 827
MunI CAATTG 2 cut(s) 132, 174
Mva1269I GAATGC 2 cut(s) 44, 760
MwoI GCNNNNNNNGC 4 cut(s) 41, 179, 548, 833
NdeI CATATG 1 cut(s) 577
NdeII GATC 1 cut(s) 816
NheI GCTAGC 1 cut(s) 542
NlaIII CATG 2 cut(s) 52, 817
NlaIV GGNNCC 2 cut(s) 97, 394
NmeAIII GCCGAG 1 cut(s) 144
NsiI ATGCAT 2 cut(s) 190, 760
PagI TCATGA 1 cut(s) 813
PciSI GCTCTTC 1 cut(s) 452
PctI GAATGC 2 cut(s) 44, 760
PfeI GAWTC 1 cut(s) 745
PflFI GACNNNGTC 1 cut(s) 617
PflMI CCANNNNNTGG 2 cut(s) 206, 363
PkrI GCNGC 6 cut(s) 37, 40, 43, 259, 571, 835
PleI GAGTC 2 cut(s) 116, 783
PpsI GAGTC 2 cut(s) 116, 783
PshBI ATTAAT 1 cut(s) 804
Psp124BI GAGCTC 1 cut(s) 504
PspN4I GGNNCC 2 cut(s) 97, 394
PspPI GGNCC 1 cut(s) 687
PstI CTGCAG 1 cut(s) 40
PsyI GACNNNGTC 1 cut(s) 617
PvuII CAGCTG 2 cut(s) 41, 827
RsaI GTAC 4 cut(s) 89, 129, 341, 565
RsaNI GTAC 4 cut(s) 88, 128, 340, 564
RseI CAYNNNNRTG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 452
SaqAI TTAA 6 cut(s) 239, 591, 648, 804, 885, 904
SatI GCNGC 6 cut(s) 36, 39, 42, 258, 570, 834
Sau3AI GATC 1 cut(s) 816
Sau96I GGNCC 1 cut(s) 687
SchI GAGTC 2 cut(s) 116, 784
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 8 cut(s) 169, 175, 197, 501, 661, 757, 820, 845
SfcI CTRYAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 417
SsiI CCGC 1 cut(s) 257
SspMI CTAG 2 cut(s) 543, 720
SstI GAGCTC 1 cut(s) 504
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 285
TatI WGTACW 1 cut(s) 87
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 1 cut(s) 745
Tru1I TTAA 6 cut(s) 239, 591, 648, 804, 885, 904
Tru9I TTAA 6 cut(s) 239, 591, 648, 804, 885, 904
TscAI CASTG 1 cut(s) 643
TseI GCWGC 5 cut(s) 35, 38, 41, 569, 833
TspDTI ATGAA 4 cut(s) 37, 148, 156, 741
TspRI CASTG 1 cut(s) 643
Tth111I GACNNNGTC 1 cut(s) 617
Van91I CCANNNNNTGG 2 cut(s) 206, 363
VspI ATTAAT 1 cut(s) 804
XapI RAATTY 3 cut(s) 105, 116, 442
XspI CTAG 2 cut(s) 543, 720
Zsp2I ATGCAT 2 cut(s) 190, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.