Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014584

Physical Location & Seq

Genomic Coordinates Reverse (-)

12420203 .. 12427412

Gene Structure 7210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1108300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGTTTACGTGAGCTCGAAAAAGGACCTGAAACGAAGGGAGATACAGAAGAAGAAGGCCAAGTCTGGAGGCTTTGAGTCTCTGAATCTAAGTCCCAATGTCTTCAATGCAATCAAGCGCAAGGGCTACAAAGTACCCACTCCCATCCAGCGCAAGACCATGCCGCTTATTCTAGCTGGAAACGATGTCGTTGCCATGGCCAGAACCGGTTCTGGCAAGACCGCCGCTTTTCTGATCCCGATGCTCGAGCGTCTGAAGGAGCACGTACCTCAGGGCGGCGTTCGGGCTCTCATTCTATCTCCCACCAGGGACTTGGCGCTACAGACTCACAAGTTTACCAAAGAGCTCAGCCGTTTCATGGATGTCCGTATTAGTTTACTAGTTGGTGGCGATAGCATGGAAACTCAGTTTGAAGAATTAGCCCAAAACCCTGATATTATAATTGCAACTCCCGGTAGGTTGATGCACCATTTAGCTGAGGTTGATGACATGACACTTAGGACAGTGGAGTATGTTGTTTTTGATGAAGCAGATTGCCTCTTTGGCATGGGTTTCGCGGAGCAGTTGCATAAAATCCTTGGACAGCTGAGTGAGAATCGCCAGACCTTGCTTTTTAGTGCAACACTACCCTCTGCTCTTGCAGAGTTTGCAAAGGCTGGTCTGCAAGACCCTCGGCTTGTGCGGCTTGATTTGGATACTAAGATTAGCCCTGACTTGAAGCTTATGTTTTTCACCTTGAGACAGGAAGAAAAGCACGCTGCAATACTTTATTTGATAAGGGAGCATATTAGTTCGGGTGAGCAGACATTGATATTTGTATCTACAAAACATCATGTGGAGTTTCTGAATATCTTGTTCAGAGAAGAGGGCATTGAGCCTTCTGTATGTTATGGTGACATGGATCATGATGCTCGCCAGATTAATGTATCAAGGTTTAGGTCAAGAAAGACTATGCAGTTAATTGTCACTGATGTTGCAGCTAGAGGAATTGACATTCCATTGCTTGACAATGTCATCAATTGGGACTTTCCCCCAAAGCCTAAACTTTTTGTTCATCGAGTAGGCCGAGCTGCAAGGGCTGGTCGGACTGGTACTGCATTCTCCTTTGTGACATCTGAAGATATGCCTAACCTTTTAGATCTACATCTGTTTCTTTCAAAGCCAACTAGGGCTGCACCCACAGAGGAGGAAGTTTTACATGATATGGATGGAGTGATGTCTAAGATTGATCAAGCAATTGCTAATGGAGAAACTGTTTATGGGCGTTTTCCCCAAACAGTTATAGATCTTGTTTCGGATAGAGTTAGAGAGATAATAGATTCTTCTTCAGAACTCAGTAATATGGTGAAAACCTGTGCAAATGCATTCCGCTTGTATTCAAAGACAAAACCCCCACCTTCAAAGGAGTCTGTTAAAAGAGCAAAAGATTTACCTCGCGAAGGGTTGCATCCAATTTTTAAAAGTGTACTGGATGGTGGAGAGTTGAAGGCATTGGCATTTTCTGAGCGGTTGAAGACATTCAGACCCAAGCAGACCATTCTAGAAACTGAAGGTGAAGCTGCTAAGTCAAAGAATCTGAAGGGTTCTTCTCGTCACTGGGTTGATGTAATGAAGGAAAAAAGAGCTATTCATGAAGAGGTCATTAATTTATTTCATCAACAACGTTCTAATAATAATCATGCGGAAAAGGAAGATGAAGATGATTTTATTCCCTCAAAGACCAAGGAGAAGAAAGTATCTTCAGGCTCCAAAAGGAAGGCAAAGAGCTTCAAGGATGATGAAAACTTTATAAGTTCAATACCAACTAATCATCATACCGAAGCAGGACTCTCAGTGAGAGGGAAGGACGACTTTGACTCAAATAGGTTGGAAGCTGCTGTTATTGATCTCATTGCAGATGATAATGTTGGCATGAAGAAACAAAAATCCGTATTTCATTGGGATAAGAGGGGGAAAAAGTACATAAAGCTAAACAATGGCGATCGCGTGACAGCTAGCGGCAAGATAAAGACAGAGAGTGGTGCAAAAGCAAAACTTGAGAAAACTGGGATATACAAGAAGTGGAAAGAACGTTCACACAAGAGAGTATCTCTTACAGGAACTAATGAAGGGAATGCTGAGGATTCCACAGGTAACCGTAGATGGCAGGGGAAGGGTAAGTCTTTCGGAGGCAGGAAGCAACACTCTGTGCCTAATGCTCATGTGCGTTCTGAAATCAAAGACTTGGAACAGGTTCGCAAGGAGCGACAGAAAAAGGCCGACAGGGTCTCTTATATGAAGAGCAAGTCGGCCAAGGGCGGTAAAAAATTTGGTAAAAATGGTAAAAGAGGAAAGGGAAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBP10CT DEAD Helicase_C

Protein Analysis

782

Amino Acids

87.97

Weight (kDa)

9.72

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	47 - 215	1.1e-50	DEAD/DEAH box helicase
Helicase_C	PF00271	253 - 361	3.6e-24	Helicase conserved C-terminal domain
DBP10CT	PF08147	629 - 690	7.8e-12	DBP10CT (NUC160) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77030
fragaria_vesca	FvH4_2g15160 FvH4_2g15160
malus_domestica	MD07G1108300.v1.1
prunus_persica	Prupe.2G131100_v2.0.a1 Prupe.2G131100_v2.0.a1
pyrus_communis	pycom07g09270
rosa_chinensis	RchiOBHm_Chr6g0277821
rosa_laevigata	RLG00000013266
rosa_multiflora	Rmu_sc0001874.1_g000004
rosa_roxburghii	Rroxscaffold_7G00190870
rosa_rugosa	Rorug06G0111700
rosa_samantha	Rh6AG222500 Rh6BG226000 Rh6CG228500 Rh6DG219600
rosa_wichuraiana	Rw6G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	440, 1790
AccBSI	CCGCTC	1 cut(s)	1507
AccII	CGCG	3 cut(s)	557, 1437, 1986
AclI	AACGTT	2 cut(s)	1663, 2071
AclWI	GGATC	2 cut(s)	229, 909
AcoI	YGGCCR	2 cut(s)	198, 2289
AcsI	RAATTY	1 cut(s)	2306
AcuI	CTGAAG	6 cut(s)	275, 1137, 1311, 1569, 1598, 1725
AdeI	CACNNNGTG	1 cut(s)	2188
AfaI	GTAC	5 cut(s)	135, 267, 1093, 1467, 1961
AfiI	CCNNNNNNNGG	3 cut(s)	275, 358, 1439
AgeI	ACCGGT	1 cut(s)	206
AhlI	ACTAGT	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	305
AloI	GAACNNNNNNTCC	2 cut(s)	2056, 2088
Alw21I	GWGCWC	3 cut(s)	17, 264, 348
Alw26I	GTCTC	3 cut(s)	84, 733, 2272
AlwI	GGATC	2 cut(s)	229, 909
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	5 cut(s)	57, 198, 1063, 2256, 2289
ApeKI	GCWGC	6 cut(s)	758, 977, 1070, 1172, 1559, 1874
ApoI	RAATTY	1 cut(s)	2306
AseI	ATTAAT	2 cut(s)	921, 1644
AsiGI	ACCGGT	1 cut(s)	206
AsiSI	GCGATCGC	1 cut(s)	1984
Asp700I	GAANNNNTTC	3 cut(s)	208, 1517, 2232
AspLEI	GCGC	3 cut(s)	120, 153, 319
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	5 cut(s)	724, 809, 905, 1357, 1565
AsuNHI	GCTAGC	1 cut(s)	1994
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	3 cut(s)	17, 289, 348
BbsI	GAAGAC	2 cut(s)	94, 1520
Bbv12I	GWGCWC	3 cut(s)	17, 264, 348
BbvCI	CCTCAGC	2 cut(s)	477, 2118
BbvI	GCAGC	6 cut(s)	745, 989, 1057, 1159, 1546, 1861
BccI	CCATC	4 cut(s)	152, 1202, 1466, 2136
BceAI	ACGGC	1 cut(s)	336
BcgI	CGANNNNNNTGC	6 cut(s)	173, 207, 535, 569, 653, 687
BciT130I	CCWGG	1 cut(s)	307
BciVI	GTATCC	1 cut(s)	688
BclI	TGATCA	1 cut(s)	1228
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	3 cut(s)	84, 733, 2272
BcuI	ACTAGT	1 cut(s)	379
BfaI	CTAG	6 cut(s)	173, 380, 981, 1167, 1541, 1995
BfmI	CTRYAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	688
BglI	GCCNNNNNGGC	1 cut(s)	543
BglII	AGATCT	2 cut(s)	1138, 1285
BlpI	GCTNAGC	1 cut(s)	347
Bme1390I	CCNGG	2 cut(s)	307, 453
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	1747
BmrFI	CCNGG	2 cut(s)	307, 453
BmrI	ACTGGG	2 cut(s)	1606, 2055
BmsI	GCATC	4 cut(s)	231, 453, 898, 1456
BmtI	GCTAGC	1 cut(s)	1998
BmuI	ACTGGG	2 cut(s)	1606, 2055
BpiI	GAAGAC	2 cut(s)	94, 1520
BplI	GAGNNNNNCTC	2 cut(s)	2074, 2106
BpmI	CTGGAG	1 cut(s)	87
Bpu10I	CCTNAGC	2 cut(s)	477, 2118
Bpu1102I	GCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	757, 2057
BpuMI	CCSGG	1 cut(s)	453
BsaAI	YACGTR	2 cut(s)	10, 265
BsaBI	GATNNNNATC	1 cut(s)	1143
BsaI	GGTCTC	1 cut(s)	2272
BsaJI	CCNNGG	6 cut(s)	195, 306, 577, 671, 1722, 2292
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	1239, 1269
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 358, 1439
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	4 cut(s)	1093, 1473, 1601, 2050
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	2 cut(s)	998, 1890
Bse8I	GATNNNNATC	1 cut(s)	1143
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	6 cut(s)	195, 306, 577, 671, 1722, 2292
BseGI	GGATG	6 cut(s)	144, 367, 1213, 1447, 1477, 1780
BseJI	GATNNNNATC	1 cut(s)	1143
BseLI	CCNNNNNNNGG	3 cut(s)	275, 358, 1439
BseMI	GCAATG	2 cut(s)	998, 1890
BseMII	CTCAG	9 cut(s)	284, 361, 419, 468, 578, 1348, 1494, 1845, 2109
BseNI	ACTGG	4 cut(s)	1093, 1473, 1601, 2050
BseRI	GAGGAG	1 cut(s)	1199
BseXI	GCAGC	6 cut(s)	745, 989, 1057, 1159, 1546, 1861
BsgI	GTGCAG	1 cut(s)	1158
Bsh1236I	CGCG	3 cut(s)	557, 1437, 1986
Bsh1285I	CGRYCG	1 cut(s)	1984
BshFI	GGCC	5 cut(s)	59, 200, 1065, 2258, 2291
BshTI	ACCGGT	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	1984
BsiHKAI	GWGCWC	3 cut(s)	17, 264, 348
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	207, 453
BslFI	GGGAC	3 cut(s)	78, 323, 1037
BslI	CCNNNNNNNGG	3 cut(s)	275, 358, 1439
BsmAI	GTCTC	3 cut(s)	84, 733, 2272
BsmFI	GGGAC	3 cut(s)	78, 323, 1037
BsmI	GAATGC	3 cut(s)	1097, 1364, 2119
BsnI	GGCC	5 cut(s)	59, 200, 1065, 2258, 2291
Bso31I	GGTCTC	1 cut(s)	2272
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	4 cut(s)	17, 264, 289, 348
Bsp143I	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
Bsp1720I	GCTNAGC	1 cut(s)	347
Bsp19I	CCATGG	1 cut(s)	195
Bsp68I	TCGCGA	1 cut(s)	1437
BspANI	GGCC	5 cut(s)	59, 200, 1065, 2258, 2291
BspCNI	CTCAG	9 cut(s)	283, 360, 418, 469, 579, 1347, 1495, 1844, 2110
BspFNI	CGCG	3 cut(s)	557, 1437, 1986
BspHI	TCATGA	2 cut(s)	904, 1630
BspLI	GGNNCC	1 cut(s)	1747
BspOI	GCTAGC	1 cut(s)	1998
BspPI	GGATC	2 cut(s)	229, 909
BspQI	GCTCTTC	1 cut(s)	2273
BspTNI	GGTCTC	1 cut(s)	2272
BsrBI	CCGCTC	1 cut(s)	1507
BsrDI	GCAATG	2 cut(s)	998, 1890
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	4 cut(s)	1093, 1473, 1601, 2050
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	6 cut(s)	195, 306, 577, 671, 1722, 2292
BssMI	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
BssT1I	CCWWGG	4 cut(s)	195, 577, 1722, 2292
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	4 cut(s)	505, 1255, 1279, 2138
Bst6I	CTCTTC	3 cut(s)	858, 1629, 2273
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstBAI	YACGTR	2 cut(s)	10, 265
BstC8I	GCNNGC	3 cut(s)	756, 913, 1996
BstDSI	CCRYGG	1 cut(s)	195
BstEII	GGTNACC	1 cut(s)	2132
BstENI	CCTNNNNNAGG	1 cut(s)	1437
BstF5I	GGATG	6 cut(s)	144, 367, 1213, 1447, 1477, 1780
BstFNI	CGCG	3 cut(s)	557, 1437, 1986
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	3 cut(s)	120, 153, 319
BstKTI	GATC	7 cut(s)	237, 904, 1141, 1231, 1288, 1888, 1984
BstMAI	GTCTC	3 cut(s)	84, 733, 2272
BstMBI	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
BstMCI	CGRYCG	1 cut(s)	1984
BstMWI	GCNNNNNNNGC	4 cut(s)	543, 647, 682, 1076
BstNI	CCWGG	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	2132
BstSCI	CCNGG	2 cut(s)	305, 451
BstSFI	CTRYAG	1 cut(s)	320
BstUI	CGCG	3 cut(s)	557, 1437, 1986
BstV1I	GCAGC	6 cut(s)	745, 989, 1057, 1159, 1546, 1861
BstV2I	GAAGAC	2 cut(s)	94, 1520
BstX2I	RGATCY	2 cut(s)	1138, 1285
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	2 cut(s)	1138, 1285
Bsu36I	CCTNAGG	1 cut(s)	270
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	5 cut(s)	59, 200, 1065, 2258, 2291
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	6 cut(s)	144, 367, 1213, 1447, 1477, 1780
BtsIMutI	CAGTG	4 cut(s)	510, 966, 1594, 1839
BtuMI	TCGCGA	1 cut(s)	1437
Cac8I	GCNNGC	3 cut(s)	756, 913, 1996
CciI	TCATGA	2 cut(s)	904, 1630
CfoI	GCGC	3 cut(s)	120, 153, 319
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	25
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	5 cut(s)	134, 266, 1092, 1466, 1960
CspAI	ACCGGT	1 cut(s)	206
CviQI	GTAC	5 cut(s)	134, 266, 1092, 1466, 1960
DpnI	GATC	7 cut(s)	236, 903, 1140, 1230, 1287, 1887, 1983
DpnII	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
DraI	TTTAAA	1 cut(s)	1459
DraIII	CACNNNGTG	1 cut(s)	2188
EaeI	YGGCCR	2 cut(s)	198, 2289
Eam1104I	CTCTTC	3 cut(s)	858, 1629, 2273
EarI	CTCTTC	3 cut(s)	858, 1629, 2273
Ecl136II	GAGCTC	2 cut(s)	15, 346
Eco130I	CCWWGG	4 cut(s)	195, 577, 1722, 2292
Eco24I	GRGCYC	3 cut(s)	17, 289, 348
Eco31I	GGTCTC	1 cut(s)	2272
Eco47I	GGWCC	1 cut(s)	25
Eco53kI	GAGCTC	2 cut(s)	15, 346
Eco57I	CTGAAG	6 cut(s)	275, 1137, 1311, 1569, 1598, 1725
Eco81I	CCTNAGG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	2132
EcoICRI	GAGCTC	2 cut(s)	15, 346
EcoNI	CCTNNNNNAGG	1 cut(s)	1437
EcoO109I	RGGNCCY	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	2132
EcoRII	CCWGG	1 cut(s)	305
EcoT14I	CCWWGG	4 cut(s)	195, 577, 1722, 2292
EcoT22I	ATGCAT	1 cut(s)	1366
EcoT38I	GRGCYC	3 cut(s)	17, 289, 348
ErhI	CCWWGG	4 cut(s)	195, 577, 1722, 2292
FalI	AAGNNNNNCTT	4 cut(s)	1835, 1867, 2019, 2051
FaqI	GGGAC	3 cut(s)	78, 323, 1037
FbaI	TGATCA	1 cut(s)	1228
FokI	GGATG	6 cut(s)	131, 374, 1220, 1434, 1484, 1787
FriOI	GRGCYC	3 cut(s)	17, 289, 348
FspBI	CTAG	6 cut(s)	173, 380, 981, 1167, 1541, 1995
GlaI	GCGC	3 cut(s)	119, 152, 318
GsuI	CTGGAG	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	5 cut(s)	59, 200, 1065, 2258, 2291
HapII	CCGG	2 cut(s)	207, 453
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	3 cut(s)	120, 153, 319
Hin6I	GCGC	3 cut(s)	118, 151, 317
HinP1I	GCGC	3 cut(s)	118, 151, 317
HindIII	AAGCTT	1 cut(s)	719
HpaII	CCGG	2 cut(s)	207, 453
HphI	GGTGA	5 cut(s)	724, 809, 905, 1357, 1565
Hpy166II	GTNNAC	5 cut(s)	7, 336, 377, 1466, 2075
Hpy188III	TCNNGA	7 cut(s)	66, 238, 905, 942, 1436, 1541, 1631
Hpy8I	GTNNAC	5 cut(s)	7, 336, 377, 1466, 2075
HpyCH4III	ACNGT	4 cut(s)	505, 1255, 1279, 2138
HpyCH4IV	ACGT	4 cut(s)	9, 264, 1663, 2071
HpyF10VI	GCNNNNNNNGC	4 cut(s)	543, 647, 682, 1076
HpySE526I	ACGT	4 cut(s)	9, 264, 1663, 2071
HspAI	GCGC	3 cut(s)	118, 151, 317
Ksp22I	TGATCA	1 cut(s)	1228
Kzo9I	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
LguI	GCTCTTC	1 cut(s)	2273
LmnI	GCTCC	5 cut(s)	259, 559, 781, 1751, 2242
Lsp1109I	GCAGC	6 cut(s)	745, 989, 1057, 1159, 1546, 1861
LweI	GCATC	4 cut(s)	231, 453, 898, 1456
MaeI	CTAG	6 cut(s)	173, 380, 981, 1167, 1541, 1995
MaeII	ACGT	4 cut(s)	9, 264, 1663, 2071
MaeIII	GTNAC	6 cut(s)	893, 964, 1108, 1592, 1987, 2132
MalI	GATC	7 cut(s)	236, 903, 1140, 1230, 1287, 1887, 1983
MbiI	CCGCTC	1 cut(s)	1507
MboI	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
MfeI	CAATTG	2 cut(s)	1018, 1236
MflI	RGATCY	2 cut(s)	1138, 1285
MhlI	GDGCHC	4 cut(s)	17, 264, 289, 348
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	9 cut(s)	416, 441, 960, 987, 1018, 1236, 1452, 1645, 2306
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	5 cut(s)	86, 319, 1415, 1821, 1850
MmeI	TCCRAC	2 cut(s)	1064, 1848
Mox20I	TGGCCA	1 cut(s)	200
Mph1103I	ATGCAT	1 cut(s)	1366
MroXI	GAANNNNTTC	3 cut(s)	208, 1517, 2232
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	5 cut(s)	921, 959, 1413, 1458, 1644
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	586
MspI	CCGG	2 cut(s)	207, 453
MspR9I	CCNGG	2 cut(s)	307, 453
MunI	CAATTG	2 cut(s)	1018, 1236
Mva1269I	GAATGC	3 cut(s)	1097, 1364, 2119
MvaI	CCWGG	1 cut(s)	307
MvnI	CGCG	3 cut(s)	557, 1437, 1986
MwoI	GCNNNNNNNGC	4 cut(s)	543, 647, 682, 1076
NciI	CCSGG	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
NheI	GCTAGC	1 cut(s)	1994
NlaIV	GGNNCC	1 cut(s)	1747
NmeAIII	GCCGAG	2 cut(s)	652, 1091
NmuCI	GTSAC	5 cut(s)	893, 964, 1108, 1592, 1987
NruI	TCGCGA	1 cut(s)	1437
NsiI	ATGCAT	1 cut(s)	1366
PaeR7I	CTCGAG	1 cut(s)	245
PagI	TCATGA	2 cut(s)	904, 1630
PciSI	GCTCTTC	1 cut(s)	2273
PcsI	WCGNNNNNNNCGW	2 cut(s)	1063, 2242
PctI	GAATGC	3 cut(s)	1097, 1364, 2119
PdmI	GAANNNNTTC	3 cut(s)	208, 1517, 2232
PfeI	GAWTC	5 cut(s)	85, 595, 1319, 1573, 2123
PflFI	GACNNNGTC	2 cut(s)	1010, 2264
PinAI	ACCGGT	1 cut(s)	206
Ple19I	CGATCG	1 cut(s)	1984
PleI	GAGTC	5 cut(s)	85, 319, 1414, 1821, 1850
PpsI	GAGTC	5 cut(s)	85, 319, 1414, 1821, 1850
Ppu21I	YACGTR	2 cut(s)	10, 265
PpuMI	RGGWCCY	1 cut(s)	25
PshBI	ATTAAT	2 cut(s)	921, 1644
PsiI	TTATAA	2 cut(s)	440, 1790
Psp124BI	GAGCTC	2 cut(s)	17, 348
Psp1406I	AACGTT	2 cut(s)	1663, 2071
Psp5II	RGGWCCY	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	305
PspEI	GGTNACC	1 cut(s)	2132
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	1747
PspPI	GGNCC	1 cut(s)	25
PspPPI	RGGWCCY	1 cut(s)	25
PspXI	VCTCGAGB	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	1138, 1285
PsyI	GACNNNGTC	2 cut(s)	1010, 2264
PvuI	CGATCG	1 cut(s)	1984
PvuII	CAGCTG	1 cut(s)	586
RgaI	GCGATCGC	1 cut(s)	1984
RruI	TCGCGA	1 cut(s)	1437
RsaI	GTAC	5 cut(s)	135, 267, 1093, 1467, 1961
RsaNI	GTAC	5 cut(s)	134, 266, 1092, 1466, 1960
SacI	GAGCTC	2 cut(s)	17, 348
SapI	GCTCTTC	1 cut(s)	2273
SaqAI	TTAA	5 cut(s)	921, 959, 1413, 1458, 1644
Sau3AI	GATC	7 cut(s)	234, 901, 1138, 1228, 1285, 1885, 1981
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	5 cut(s)	86, 319, 1415, 1821, 1850
ScrFI	CCNGG	2 cut(s)	307, 453
SduI	GDGCHC	4 cut(s)	17, 264, 289, 348
SfaAI	GCGATCGC	1 cut(s)	1984
SfaNI	GCATC	4 cut(s)	231, 453, 898, 1456
SfcI	CTRYAG	1 cut(s)	320
Sfr274I	CTCGAG	1 cut(s)	245
SgfI	GCGATCGC	1 cut(s)	1984
SinI	GGWCC	1 cut(s)	25
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	3 cut(s)	245, 736, 2036
SmoI	CTYRAG	3 cut(s)	245, 736, 2036
SpeI	ACTAGT	1 cut(s)	379
Sse9I	AATT	9 cut(s)	416, 441, 960, 987, 1018, 1236, 1452, 1645, 2306
SspMI	CTAG	6 cut(s)	173, 380, 981, 1167, 1541, 1995
SstI	GAGCTC	2 cut(s)	17, 348
StyD4I	CCNGG	2 cut(s)	305, 451
StyI	CCWWGG	4 cut(s)	195, 577, 1722, 2292
TaaI	ACNGT	4 cut(s)	505, 1255, 1279, 2138
TaiI	ACGT	4 cut(s)	12, 267, 1666, 2074
TaqI	TCGA	3 cut(s)	17, 246, 1057
TasI	AATT	9 cut(s)	416, 441, 960, 987, 1018, 1236, 1452, 1645, 2306
TatI	WGTACW	2 cut(s)	1465, 1959
TauI	GCSGC	5 cut(s)	166, 227, 279, 685, 2001
TfiI	GAWTC	5 cut(s)	85, 595, 1319, 1573, 2123
Tru1I	TTAA	5 cut(s)	921, 959, 1413, 1458, 1644
Tru9I	TTAA	5 cut(s)	921, 959, 1413, 1458, 1644
TscAI	CASTG	4 cut(s)	510, 973, 1601, 1839
TseFI	GTSAC	5 cut(s)	893, 964, 1108, 1592, 1987
TseI	GCWGC	6 cut(s)	758, 977, 1070, 1172, 1559, 1874
Tsp45I	GTSAC	5 cut(s)	893, 964, 1108, 1592, 1987
TspGWI	ACGGA	2 cut(s)	356, 1918
TspRI	CASTG	4 cut(s)	510, 973, 1601, 1839
Tth111I	GACNNNGTC	2 cut(s)	1010, 2264
VpaK11BI	GGWCC	1 cut(s)	25
VspI	ATTAAT	2 cut(s)	921, 1644
XagI	CCTNNNNNAGG	1 cut(s)	1437
XapI	RAATTY	1 cut(s)	2306
XbaI	TCTAGA	1 cut(s)	1540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	245
XmnI	GAANNNNTTC	3 cut(s)	208, 1517, 2232
XspI	CTAG	6 cut(s)	173, 380, 981, 1167, 1541, 1995
Zsp2I	ATGCAT	1 cut(s)	1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.