Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014584

Physical Location & Seq

Genomic Coordinates Forward (+)

39030552 .. 39037069

Gene Structure 6518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG219600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGGTGGTGGCGCCGCCCAAGTACGTGAGCTCAGTAGGCGATCTGAAGCGCCGCGAGTTGCAGAAGAAGAAAGCCAAGTCGGGAGGGTTCGAGTCTCTCAACCTAAGCCCCAATGTCTTCAAAGCAATCAAGCGCAAGGGCTACAAAGTCCCCACACCCATTCAGCGCAAGACCATGCCCCTTATTCTCTCCGGAAACGACGTCGTCGCCATGGCCCGAACCGGTTCCGGCAAAACGGCGGCGTTTCTCATCCCCATGCTCGAGCGTTTGAAGGAGCACGTCCCCCAGGGCGGTGTTAGGGCTCTCATTCTCTCTCCCACTAGAGACTTGGCTCTTCAGACCCTCAAGTTTACCACAGAGCTCGCCCAATTCATGGATCTTCGGATCAGTTTACTAGTTGGTGGTGATAGCATGGAAACTCAGTTTGAGGAGCTGGCTCAAAACCCGGATATTATAATTGCAACCCCTGGCAGGCTGATTCACCATTTAACTGAGATCGACGAGATGTCGCTTCGCTCGGTGGAGTATGTTGTTTTTGATGAGGCCGATTGTCTCTTTGGCATGGGTTTTGCTGAGCAGTTGCATAAGATTCTTGCGCAGCTGAGTGATAACCGTCAGACATTGCTCTTTAGTGCAACATTACCTAGCGCGCTCGCAGAGTTTGCGAAGGCTGGTCTGCAAGACCCTCGCCTTGTGCGGCTTGATTTGGATACTAAGATTAGCCCCGACTTGAAGCTTATGTTTTTCACCTTGCGACAGGAAGAGAAGCATGCGGCAATACTTTATTTGGTAAGGGAGCATATTCGTTCCGATGAGCAGACGTTGATATTTGTATCCACTAAGCATCATGTGGAGTTCCTGAATATCTTGTTTAGAGAAGAGGGCATTGTGCCTTCTGTGTGTTACGGTGACATGGATCATGATGCTCGGAAAATTCATATATCAAAGTTTAAGCACAGAAAGACTATGTTGTTAATTGTTACTGATGTTGCAGCCAGGGGAATTGATATTCCATTGCTTGACAATGTTATCAATTGGGATTTTCCCCCAAAGCCTAAACTTTTTGTCCATAGAGTAGGTCGAGCTGCAAGGGCTGGTCGGACTGGCACTGCATTCTCTCTTGTGACATCTGAAGACATACCTAACCTTTTAGATCTTCTTCTGTTTCTTTCAAAACCAATTAGGCCAGCACCTACGGAGGAGGAGGTTTTACAGGATATGGATGGAGTAATGTCCAAGATTGATCAAGCAGTTGCAAATGGAGAAAGTATTTATGGGCGTTTCCCCCAAACAGCTATTGATCTGGTTTCAGACAGGGTTAGAGAGATAATTGATTCTTCGTCAGAACTCAGCCTTTTGCTGAAAACTTGTGCAAATGCATTTCGCTTGTATTCAAAGACAAAGCCCTCCCCTTCAAGGGAATCTATTAAAAGAGCAAAAGATTTACCTCGGGAAGGGTTGCATCCAATATTTAAAAACACACTTGAGGGTGGAGAGTTGAAGGCATTGGCATTTTCTGAACGGTTGAAGACATTCAGACCTGAGCAGACCATTCTAGAAGCTGAAGGGAAAGCTGCTAAGTCAAAGAATGCGAAGGGTCCTTCTCGTCAGTGGGTTGATGTAATGAAGAAAAAAAGAGCTATTCATGAAGGGATAATTAGTTTAGTGCATCAGCAAAATCAGGAACGTTCCAATAATCATGCTGAAGAGGAAGATGAATCTGAGATTATTCCCTTAAAGAAAAAGAGAAAGAAAGAATCTTCCGGTTCTAAAAGGAAGGCAACGAGCTTCAAGGATGAGGATTACTTTATAAGTTCCATACCCACAAATCATCATATGGAAGCGGGACTCTCAGTGAGAGGGAATGAGAACTTTGACTCTAATAGGTTGGAAGCTGCTGTTCTAGATCTAGTTGCAGATGATAATGTGGGCATGAAGAAACAGAAATCTGTATTTCATTGGGATAAGAGTGGGAAAAAGTACATAAAGCTAACTTCACGCGACCGAGTGACTGCTAGCGGCAAGGTAAAGACAGAGAGTGGTGCCAAAGGAAAACTTGAGAAAACTGGAATATACAGTAAGTGGAAAGCACGTTCACACAATAAAGTATCTTTCGAAGGCACTGACGAAGGGAATGCTGAGGAAGCCACAGGCAACCAGAGATGGCAGGGGAACAGGGGGAACCCACGGGGAGGCAGGAAGCAGCGGTCTATTCCTAATGCTCATGTGCGTTCTGAAATCAAAGACTTGGATCAAGTTCGGAAGGAGAGGCAGAAAAAGGCAGATAGAATGGTTCATTTGAAGAGCAAATCTACAAAGGGGGGTAAAAAATTTGGTAAAAATGGAAAAAGAGGAAAGGCAAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBP10CT DEAD Helicase_C

Protein Analysis

789

Amino Acids

88.62

Weight (kDa)

9.72

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	52 - 220	9.6e-51	DEAD/DEAH box helicase
ResIII	PF04851	69 - 214	6.5e-07	Type III restriction enzyme, res subunit
Helicase_C	PF00271	258 - 366	1.1e-23	Helicase conserved C-terminal domain
DBP10CT	PF08147	636 - 697	1.9e-09	DBP10CT (NUC160) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77030
fragaria_vesca	FvH4_2g15160 FvH4_2g15160
malus_domestica	MD07G1108300.v1.1
prunus_persica	Prupe.2G131100_v2.0.a1 Prupe.2G131100_v2.0.a1
pyrus_communis	pycom07g09270
rosa_chinensis	RchiOBHm_Chr6g0277821
rosa_laevigata	RLG00000013266
rosa_multiflora	Rmu_sc0001874.1_g000004
rosa_roxburghii	Rroxscaffold_7G00190870
rosa_rugosa	Rorug06G0111700
rosa_samantha	Rh6AG222500 Rh6BG226000 Rh6CG228500 Rh6DG219600
rosa_wichuraiana	Rw6G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	455, 1811
AatII	GACGTC	1 cut(s)	204
Acc16I	TGCGCA	1 cut(s)	597
AccB1I	GGYRCC	2 cut(s)	10, 2042
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccII	CGCG	3 cut(s)	54, 650, 2001
AccIII	TCCGGA	1 cut(s)	191
AciI	CCGC	9 cut(s)	14, 52, 239, 291, 697, 773, 1844, 2019, 2206
AclI	AACGTT	1 cut(s)	1687
AclWI	GGATC	4 cut(s)	384, 392, 924, 2259
AcsI	RAATTY	2 cut(s)	933, 2330
AcuI	CTGAAG	5 cut(s)	65, 320, 1152, 1584, 1725
AcyI	GRCGYC	2 cut(s)	11, 201
AfaI	GTAC	2 cut(s)	23, 1982
AfiI	CCNNNNNNNGG	7 cut(s)	290, 373, 471, 1416, 1417, 1454, 2192
AgeI	ACCGGT	1 cut(s)	221
AhdI	GACNNNNNGTC	1 cut(s)	505
AhlI	ACTAGT	1 cut(s)	394
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	3 cut(s)	285, 466, 995
AloI	GAACNNNNNNTCC	2 cut(s)	2077, 2109
Alw21I	GWGCWC	3 cut(s)	32, 279, 363
Alw26I	GTCTC	3 cut(s)	99, 318, 557
AlwI	GGATC	4 cut(s)	384, 392, 924, 2259
Ama87I	CYCGRG	2 cut(s)	260, 1449
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	3 cut(s)	213, 543, 1184
ApeKI	GCWGC	6 cut(s)	598, 992, 1085, 1574, 1895, 2203
ApoI	RAATTY	2 cut(s)	933, 2330
AsiGI	ACCGGT	1 cut(s)	221
Asp700I	GAANNNNTTC	2 cut(s)	223, 1532
AspLEI	GCGC	7 cut(s)	13, 51, 135, 168, 598, 650, 652
AspS9I	GGNCC	2 cut(s)	214, 1598
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	4 cut(s)	416, 473, 739, 920
AsuII	TTCGAA	1 cut(s)	2115
AsuNHI	GCTAGC	1 cut(s)	2015
AvaI	CYCGRG	2 cut(s)	260, 1449
AvaII	GGWCC	1 cut(s)	1598
BanI	GGYRCC	2 cut(s)	10, 2042
BanII	GRGCYC	3 cut(s)	32, 304, 363
BbsI	GAAGAC	3 cut(s)	109, 1140, 1535
Bbv12I	GWGCWC	3 cut(s)	32, 279, 363
BbvCI	CCTCAGC	1 cut(s)	2139
BbvI	GCAGC	6 cut(s)	610, 1004, 1072, 1561, 1882, 2215
BccI	CCATC	2 cut(s)	1217, 2157
BceAI	ACGGC	1 cut(s)	252
BcgI	CGANNNNNNTGC	4 cut(s)	668, 702, 2117, 2151
BciT130I	CCWGG	3 cut(s)	287, 468, 997
BciVI	GTATCC	2 cut(s)	703, 844
BclI	TGATCA	1 cut(s)	1243
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	3 cut(s)	99, 318, 557
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	7 cut(s)	321, 395, 645, 1556, 1904, 1910, 2016
BfoI	RGCGCY	2 cut(s)	14, 52
BfuI	GTATCC	2 cut(s)	703, 844
BglII	AGATCT	2 cut(s)	1153, 1906
BlpI	GCTNAGC	1 cut(s)	573
Bme1390I	CCNGG	4 cut(s)	287, 446, 468, 997
Bme18I	GGWCC	1 cut(s)	1598
BmeRI	GACNNNNNGTC	1 cut(s)	505
BmeT110I	CYCGRG	2 cut(s)	260, 1449
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	214, 1598
BmiI	GGNNCC	5 cut(s)	12, 226, 1599, 2044, 2183
BmrFI	CCNGG	4 cut(s)	287, 446, 468, 997
BmsI	GCATC	4 cut(s)	853, 913, 1471, 1678
BmtI	GCTAGC	1 cut(s)	2019
BpiI	GAAGAC	3 cut(s)	109, 1140, 1535
Bpu10I	CCTNAGC	3 cut(s)	104, 1542, 2139
Bpu1102I	GCTNAGC	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	2115
BpuEI	CTTGAG	3 cut(s)	329, 1505, 2078
BpuMI	CCSGG	1 cut(s)	446
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	2 cut(s)	11, 201
BsaJI	CCNNGG	7 cut(s)	210, 285, 286, 466, 996, 1448, 2186
BsaWI	WCCGGW	3 cut(s)	191, 221, 1763
Bsc4I	CCNNNNNNNGG	7 cut(s)	290, 373, 471, 1416, 1417, 1454, 2192
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	1108, 2071
Bse3DI	GCAATG	2 cut(s)	620, 1013
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	3 cut(s)	287, 468, 997
BseDI	CCNNGG	7 cut(s)	210, 285, 286, 466, 996, 1448, 2186
BseGI	GGATG	4 cut(s)	249, 1228, 1462, 1801
BseLI	CCNNNNNNNGG	7 cut(s)	290, 373, 471, 1416, 1417, 1454, 2192
BseMI	GCAATG	2 cut(s)	620, 1013
BseNI	ACTGG	2 cut(s)	1108, 2071
BsePI	GCGCGC	1 cut(s)	648
BseRI	GAGGAG	3 cut(s)	443, 1214, 1217
BseXI	GCAGC	6 cut(s)	610, 1004, 1072, 1561, 1882, 2215
Bsh1236I	CGCG	3 cut(s)	54, 650, 2001
Bsh1285I	CGRYCG	1 cut(s)	2005
BshFI	GGCC	3 cut(s)	215, 545, 1186
BshNI	GGYRCC	2 cut(s)	10, 2042
BshTI	ACCGGT	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	2005
BsiHKAI	GWGCWC	3 cut(s)	32, 279, 363
BsiHKCI	CYCGRG	2 cut(s)	260, 1449
BsiSI	CCGG	5 cut(s)	192, 222, 228, 446, 1764
BslFI	GGGAC	3 cut(s)	134, 266, 1860
BslI	CCNNNNNNNGG	7 cut(s)	290, 373, 471, 1416, 1417, 1454, 2192
BsmAI	GTCTC	3 cut(s)	99, 318, 557
BsmFI	GGGAC	3 cut(s)	134, 266, 1860
BsmI	GAATGC	3 cut(s)	1112, 1594, 2140
BsnI	GGCC	3 cut(s)	215, 545, 1186
BsoBI	CYCGRG	2 cut(s)	260, 1449
Bsp119I	TTCGAA	1 cut(s)	2115
Bsp1286I	GDGCHC	4 cut(s)	32, 279, 304, 363
Bsp13I	TCCGGA	1 cut(s)	191
Bsp1720I	GCTNAGC	1 cut(s)	573
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	9 cut(s)	14, 52, 239, 291, 697, 773, 1844, 2019, 2206
BspANI	GGCC	3 cut(s)	215, 545, 1186
BspEI	TCCGGA	1 cut(s)	191
BspFNI	CGCG	3 cut(s)	54, 650, 2001
BspHI	TCATGA	2 cut(s)	919, 1645
BspLI	GGNNCC	5 cut(s)	12, 226, 1599, 2044, 2183
BspOI	GCTAGC	1 cut(s)	2019
BspPI	GGATC	4 cut(s)	384, 392, 924, 2259
BspQI	GCTCTTC	2 cut(s)	339, 2297
BspT104I	TTCGAA	1 cut(s)	2115
BspT107I	GGYRCC	2 cut(s)	10, 2042
BsrDI	GCAATG	2 cut(s)	620, 1013
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	1108, 2071
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	7 cut(s)	210, 285, 286, 466, 996, 1448, 2186
BssHII	GCGCGC	1 cut(s)	648
BssNI	GRCGYC	2 cut(s)	11, 201
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	3 cut(s)	287, 468, 997
Bst4CI	ACNGT	4 cut(s)	614, 908, 1524, 2078
Bst6I	CTCTTC	5 cut(s)	339, 756, 873, 1701, 2297
BstACI	GRCGYC	2 cut(s)	11, 201
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstBAI	YACGTR	1 cut(s)	25
BstBI	TTCGAA	1 cut(s)	2115
BstC8I	GCNNGC	8 cut(s)	363, 435, 473, 650, 654, 771, 1188, 2017
BstDSI	CCRYGG	2 cut(s)	210, 2186
BstENI	CCTNNNNNAGG	1 cut(s)	1452
BstF5I	GGATG	4 cut(s)	249, 1228, 1462, 1801
BstFNI	CGCG	3 cut(s)	54, 650, 2001
BstH2I	RGCGCY	2 cut(s)	14, 52
BstHHI	GCGC	7 cut(s)	13, 51, 135, 168, 598, 650, 652
BstMAI	GTCTC	3 cut(s)	99, 318, 557
BstMCI	CGRYCG	1 cut(s)	2005
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 662, 1091, 2144
BstNI	CCWGG	3 cut(s)	287, 468, 997
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	4 cut(s)	285, 444, 466, 995
BstUI	CGCG	3 cut(s)	54, 650, 2001
BstV1I	GCAGC	6 cut(s)	610, 1004, 1072, 1561, 1882, 2215
BstV2I	GAAGAC	3 cut(s)	109, 1140, 1535
BstX2I	RGATCY	3 cut(s)	376, 1153, 1906
BstYI	RGATCY	3 cut(s)	376, 1153, 1906
BsuI	GTATCC	2 cut(s)	703, 844
BsuRI	GGCC	3 cut(s)	215, 545, 1186
BtgI	CCRYGG	2 cut(s)	210, 2186
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	4 cut(s)	249, 1228, 1462, 1801
BtsI	GCAGTG	1 cut(s)	1107
BtsIMutI	CAGTG	4 cut(s)	1107, 1616, 1860, 2121
Cac8I	GCNNGC	8 cut(s)	363, 435, 473, 650, 654, 771, 1188, 2017
CciI	TCATGA	2 cut(s)	919, 1645
CfoI	GCGC	7 cut(s)	13, 51, 135, 168, 598, 650, 652
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	214, 1598
Csp6I	GTAC	2 cut(s)	22, 1981
CspAI	ACCGGT	1 cut(s)	221
CviQI	GTAC	2 cut(s)	22, 1981
DinI	GGCGCC	1 cut(s)	12
DraI	TTTAAA	1 cut(s)	1474
DriI	GACNNNNNGTC	1 cut(s)	505
Eam1104I	CTCTTC	5 cut(s)	339, 756, 873, 1701, 2297
Eam1105I	GACNNNNNGTC	1 cut(s)	505
EarI	CTCTTC	5 cut(s)	339, 756, 873, 1701, 2297
Ecl136II	GAGCTC	2 cut(s)	30, 361
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	3 cut(s)	32, 304, 363
Eco47I	GGWCC	1 cut(s)	1598
Eco53kI	GAGCTC	2 cut(s)	30, 361
Eco57I	CTGAAG	5 cut(s)	65, 320, 1152, 1584, 1725
Eco88I	CYCGRG	2 cut(s)	260, 1449
EcoICRI	GAGCTC	2 cut(s)	30, 361
EcoNI	CCTNNNNNAGG	1 cut(s)	1452
EcoO109I	RGGNCCY	1 cut(s)	1598
EcoRII	CCWGG	3 cut(s)	285, 466, 995
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	1381
EcoT38I	GRGCYC	3 cut(s)	32, 304, 363
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	210
FalI	AAGNNNNNCTT	2 cut(s)	2040, 2072
FaqI	GGGAC	3 cut(s)	134, 266, 1860
FauI	CCCGC	1 cut(s)	1837
FauNDI	CATATG	1 cut(s)	1836
FbaI	TGATCA	1 cut(s)	1243
FokI	GGATG	4 cut(s)	236, 1235, 1449, 1808
FriOI	GRGCYC	3 cut(s)	32, 304, 363
FspBI	CTAG	7 cut(s)	321, 395, 645, 1556, 1904, 1910, 2016
FspI	TGCGCA	1 cut(s)	597
GlaI	GCGC	7 cut(s)	12, 50, 134, 167, 597, 649, 651
HaeII	RGCGCY	2 cut(s)	14, 52
HaeIII	GGCC	3 cut(s)	215, 545, 1186
HapII	CCGG	5 cut(s)	192, 222, 228, 446, 1764
HhaI	GCGC	7 cut(s)	13, 51, 135, 168, 598, 650, 652
Hin1I	GRCGYC	2 cut(s)	11, 201
Hin6I	GCGC	7 cut(s)	11, 49, 133, 166, 596, 648, 650
HinP1I	GCGC	7 cut(s)	11, 49, 133, 166, 596, 648, 650
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	9 cut(s)	92, 478, 589, 1334, 1421, 1718, 1757, 1848, 1877
HpaII	CCGG	5 cut(s)	192, 222, 228, 446, 1764
HphI	GGTGA	4 cut(s)	416, 473, 739, 920
Hpy166II	GTNNAC	3 cut(s)	351, 392, 2096
Hpy188III	TCNNGA	9 cut(s)	81, 192, 859, 920, 1451, 1556, 1646, 1682, 1904
Hpy8I	GTNNAC	3 cut(s)	351, 392, 2096
Hpy99I	CGWCG	4 cut(s)	203, 206, 209, 503
HpyCH4III	ACNGT	4 cut(s)	614, 908, 1524, 2078
HpyCH4IV	ACGT	6 cut(s)	24, 201, 279, 821, 1687, 2092
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 662, 1091, 2144
HpySE526I	ACGT	6 cut(s)	24, 201, 279, 821, 1687, 2092
Hsp92I	GRCGYC	2 cut(s)	11, 201
HspAI	GCGC	7 cut(s)	11, 49, 133, 166, 596, 648, 650
KasI	GGCGCC	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	1243
LguI	GCTCTTC	2 cut(s)	339, 2297
LmnI	GCTCC	3 cut(s)	274, 430, 796
Lsp1109I	GCAGC	6 cut(s)	610, 1004, 1072, 1561, 1882, 2215
LweI	GCATC	4 cut(s)	853, 913, 1471, 1678
MaeI	CTAG	7 cut(s)	321, 395, 645, 1556, 1904, 1910, 2016
MaeII	ACGT	6 cut(s)	24, 201, 279, 821, 1687, 2092
MaeIII	GTNAC	5 cut(s)	902, 908, 979, 1123, 2008
MfeI	CAATTG	1 cut(s)	1033
MflI	RGATCY	3 cut(s)	376, 1153, 1906
MhlI	GDGCHC	4 cut(s)	32, 279, 304, 363
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	3 cut(s)	101, 1842, 1871
MmeI	TCCRAC	2 cut(s)	1079, 1869
Mph1103I	ATGCAT	1 cut(s)	1381
MroI	TCCGGA	1 cut(s)	191
MroXI	GAANNNNTTC	2 cut(s)	223, 1532
MseI	TTAA	6 cut(s)	488, 951, 974, 1428, 1473, 1736
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	2 cut(s)	601, 2206
MspI	CCGG	5 cut(s)	192, 222, 228, 446, 1764
MspR9I	CCNGG	4 cut(s)	287, 446, 468, 997
MunI	CAATTG	1 cut(s)	1033
Mva1269I	GAATGC	3 cut(s)	1112, 1594, 2140
MvaI	CCWGG	3 cut(s)	287, 468, 997
MvnI	CGCG	3 cut(s)	54, 650, 2001
MwoI	GCNNNNNNNGC	4 cut(s)	36, 662, 1091, 2144
NarI	GGCGCC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	210
NdeI	CATATG	1 cut(s)	1836
NheI	GCTAGC	1 cut(s)	2015
NlaIV	GGNNCC	5 cut(s)	12, 226, 1599, 2044, 2183
NmuCI	GTSAC	3 cut(s)	908, 1123, 2008
NsbI	TGCGCA	1 cut(s)	597
NsiI	ATGCAT	1 cut(s)	1381
NspI	RCATGY	1 cut(s)	773
NspV	TTCGAA	1 cut(s)	2115
PaeI	GCATGC	1 cut(s)	773
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	2 cut(s)	919, 1645
PasI	CCCWGGG	1 cut(s)	286
PauI	GCGCGC	1 cut(s)	648
PciSI	GCTCTTC	2 cut(s)	339, 2297
PctI	GAATGC	3 cut(s)	1112, 1594, 2140
PdmI	GAANNNNTTC	2 cut(s)	223, 1532
PfeI	GAWTC	6 cut(s)	478, 589, 1334, 1421, 1718, 1757
PflFI	GACNNNGTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	373
PinAI	ACCGGT	1 cut(s)	221
PleI	GAGTC	3 cut(s)	100, 1842, 1871
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	3 cut(s)	100, 1842, 1871
Ppu21I	YACGTR	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	1598
PsiI	TTATAA	2 cut(s)	455, 1811
Psp124BI	GAGCTC	2 cut(s)	32, 363
Psp1406I	AACGTT	1 cut(s)	1687
Psp5II	RGGWCCY	1 cut(s)	1598
Psp6I	CCWGG	3 cut(s)	285, 466, 995
PspGI	CCWGG	3 cut(s)	285, 466, 995
PspN4I	GGNNCC	5 cut(s)	12, 226, 1599, 2044, 2183
PspPI	GGNCC	2 cut(s)	214, 1598
PspPPI	RGGWCCY	1 cut(s)	1598
PspXI	VCTCGAGB	1 cut(s)	260
PsuI	RGATCY	3 cut(s)	376, 1153, 1906
PsyI	GACNNNGTC	1 cut(s)	203
PteI	GCGCGC	1 cut(s)	648
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	2 cut(s)	23, 1982
RsaNI	GTAC	2 cut(s)	22, 1981
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	2 cut(s)	32, 363
SapI	GCTCTTC	2 cut(s)	339, 2297
SaqAI	TTAA	6 cut(s)	488, 951, 974, 1428, 1473, 1736
Sau96I	GGNCC	2 cut(s)	214, 1598
SchI	GAGTC	3 cut(s)	101, 1842, 1871
ScrFI	CCNGG	4 cut(s)	287, 446, 468, 997
SduI	GDGCHC	4 cut(s)	32, 279, 304, 363
SfaNI	GCATC	4 cut(s)	853, 913, 1471, 1678
SfoI	GGCGCC	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	260
SfuI	TTCGAA	1 cut(s)	2115
SinI	GGWCC	1 cut(s)	1598
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	4 cut(s)	260, 344, 1484, 2057
SmoI	CTYRAG	4 cut(s)	260, 344, 1484, 2057
SpeI	ACTAGT	1 cut(s)	394
SphI	GCATGC	1 cut(s)	773
SsiI	CCGC	9 cut(s)	14, 52, 239, 291, 697, 773, 1844, 2019, 2206
SspDI	GGCGCC	1 cut(s)	10
SspI	AATATT	1 cut(s)	1470
SspMI	CTAG	7 cut(s)	321, 395, 645, 1556, 1904, 1910, 2016
SstI	GAGCTC	2 cut(s)	32, 363
StyD4I	CCNGG	4 cut(s)	285, 444, 466, 995
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	4 cut(s)	614, 908, 1524, 2078
TaiI	ACGT	6 cut(s)	27, 204, 282, 824, 1690, 2095
TaqI	TCGA	5 cut(s)	90, 261, 498, 1081, 2115
TaqII	GACCGA	1 cut(s)	2019
TatI	WGTACW	1 cut(s)	1980
TauI	GCSGC	6 cut(s)	16, 54, 242, 700, 776, 2022
TfiI	GAWTC	6 cut(s)	478, 589, 1334, 1421, 1718, 1757
Tru1I	TTAA	6 cut(s)	488, 951, 974, 1428, 1473, 1736
Tru9I	TTAA	6 cut(s)	488, 951, 974, 1428, 1473, 1736
TscAI	CASTG	4 cut(s)	1114, 1616, 1860, 2128
TseFI	GTSAC	3 cut(s)	908, 1123, 2008
TseI	GCWGC	6 cut(s)	598, 992, 1085, 1574, 1895, 2203
Tsp45I	GTSAC	3 cut(s)	908, 1123, 2008
TspDTI	ATGAA	9 cut(s)	361, 926, 1634, 1640, 1662, 1731, 1946, 1949, 2285
TspGWI	ACGGA	1 cut(s)	1211
TspRI	CASTG	4 cut(s)	1114, 1616, 1860, 2128
Tth111I	GACNNNGTC	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	1598
XagI	CCTNNNNNAGG	1 cut(s)	1452
XapI	RAATTY	2 cut(s)	933, 2330
XbaI	TCTAGA	2 cut(s)	1555, 1903
XceI	RCATGY	1 cut(s)	773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	260
XmnI	GAANNNNTTC	2 cut(s)	223, 1532
XspI	CTAG	7 cut(s)	321, 395, 645, 1556, 1904, 1910, 2016
ZraI	GACGTC	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.