Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014584

Physical Location & Seq

Genomic Coordinates Reverse (-)

15152652 .. 15153257

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0111700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACACCGCAGCCGGGAGTAGTGCTAACAGGCTTTGCAGGCGGAGCAGTACCAGGTGGACTCCCCCTCTAGATCAGATAAGAATCCTCAATGAGCTTTTCTACAGCAAGGGAGTTAGGTCCCCAACCGTAGAGCAGGTTCAATGGATCTGTTTCCAGCTGAAACGGTACGGAAAGATCGAGGGAAAGAATGTCTTTTATTGGTTCCAGAACCACAAGGCTCGGGATAAACAGAAGAAGAAGATCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTAATGGTACTAATTGGAAACCTGAGGATAAGTATATTAACTTCGGATCTTCTGCATCTGCTTCTGCTTCTTCAGCTAGTGTTGGTGGATCCATTAAGGATATTGAAACCCTTCCACTATTTCCCATGCACGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGTGGCTATGGCTACTACTCTGGTGGCTCGAGCAGCTACAACGGTGGCTCTCGCATTTTTCTTGAGCTCAGCCTCAACTCCGGATCTGTTGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBP10CT DEAD Helicase_C

Protein Analysis

201

Amino Acids

22.04

Weight (kDa)

9.18

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 91	5.9e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77030
fragaria_vesca	FvH4_2g15160 FvH4_2g15160
malus_domestica	MD07G1108300.v1.1
prunus_persica	Prupe.2G131100_v2.0.a1 Prupe.2G131100_v2.0.a1
pyrus_communis	pycom07g09270
rosa_chinensis	RchiOBHm_Chr6g0277821
rosa_laevigata	RLG00000013266
rosa_multiflora	Rmu_sc0001874.1_g000004
rosa_roxburghii	Rroxscaffold_7G00190870
rosa_rugosa	Rorug06G0111700
rosa_samantha	Rh6AG222500 Rh6BG226000 Rh6CG228500 Rh6DG219600
rosa_wichuraiana	Rw6G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	584
AciI	CCGC	2 cut(s)	48, 82
AclWI	GGATC	5 cut(s)	194, 382, 411, 424, 595
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	3 cut(s)	91, 209, 337
AfiI	CCNNNNNNNGG	2 cut(s)	54, 458
AgsI	TTSAA	2 cut(s)	182, 434
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	5 cut(s)	136, 199, 404, 540, 571
AluI	AGCT	5 cut(s)	136, 199, 404, 540, 571
Alw21I	GWGCWC	1 cut(s)	573
AlwI	GGATC	5 cut(s)	194, 382, 411, 424, 595
Ama87I	CYCGRG	2 cut(s)	261, 532
Aor13HI	TCCGGA	1 cut(s)	584
ApeKI	GCWGC	2 cut(s)	50, 537
Asp700I	GAANNNNTTC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	473
AvaI	CYCGRG	2 cut(s)	261, 532
AvaII	GGWCC	1 cut(s)	159
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	573
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
BbsI	GAAGAC	1 cut(s)	491
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	2 cut(s)	62, 549
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	55
BfaI	CTAG	2 cut(s)	110, 405
BfmI	CTRYAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	51, 538
BlpI	GCTNAGC	1 cut(s)	572
BlsI	GCNGC	2 cut(s)	52, 539
Bme1390I	CCNGG	2 cut(s)	55, 94
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	2 cut(s)	261, 532
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	4 cut(s)	6, 161, 245, 418
BmrFI	CCNGG	2 cut(s)	55, 94
BmsI	GCATC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	572
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	27, 495
BsaWI	WCCGGW	1 cut(s)	584
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 458
Bse21I	CCTNAGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	584
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	27, 495
BseGI	GGATG	2 cut(s)	37, 298
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	54, 458
BseMII	CTCAG	2 cut(s)	342, 586
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	62, 549
BseYI	CCCAGC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	2 cut(s)	261, 532
BsiSI	CCGG	2 cut(s)	54, 585
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	54, 458
BsmFI	GGGAC	1 cut(s)	145
BsoBI	CYCGRG	2 cut(s)	261, 532
Bsp1286I	GDGCHC	2 cut(s)	306, 573
Bsp13I	TCCGGA	1 cut(s)	584
Bsp143I	GATC	8 cut(s)	112, 186, 216, 282, 314, 374, 416, 587
Bsp1720I	GCTNAGC	1 cut(s)	572
BspACI	CCGC	2 cut(s)	48, 82
BspCNI	CTCAG	2 cut(s)	343, 585
BspEI	TCCGGA	1 cut(s)	584
BspLI	GGNNCC	4 cut(s)	6, 161, 245, 418
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	5 cut(s)	194, 382, 411, 424, 595
BssECI	CCNNGG	2 cut(s)	27, 495
BssMI	GATC	8 cut(s)	112, 186, 216, 282, 314, 374, 416, 587
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	4 cut(s)	169, 207, 461, 548
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	3 cut(s)	351, 572, 603
BstF5I	GGATG	2 cut(s)	37, 298
BstKTI	GATC	8 cut(s)	115, 189, 219, 285, 317, 377, 419, 590
BstMBI	GATC	8 cut(s)	112, 186, 216, 282, 314, 374, 416, 587
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 84, 401, 537
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	53, 92
BstSFI	CTRYAG	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	62, 549
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	4 cut(s)	186, 374, 416, 587
BstYI	RGATCY	4 cut(s)	186, 374, 416, 587
Bsu36I	CCTNAGG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	37, 298
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	159
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	90, 208, 336
CviAII	CATG	4 cut(s)	299, 307, 454, 481
CviQI	GTAC	3 cut(s)	90, 208, 336
DdeI	CTNAG	3 cut(s)	351, 572, 603
DpnI	GATC	8 cut(s)	114, 188, 218, 284, 316, 376, 418, 589
DpnII	GATC	8 cut(s)	112, 186, 216, 282, 314, 374, 416, 587
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	2 cut(s)	261, 532
EcoICRI	GAGCTC	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	573
FaeI	CATG	4 cut(s)	302, 310, 457, 484
FaiI	YATR	6 cut(s)	300, 308, 363, 455, 482, 513
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	4 cut(s)	298, 306, 453, 480
Fnu4HI	GCNGC	2 cut(s)	51, 538
FokI	GGATG	2 cut(s)	44, 305
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	2 cut(s)	51, 538
FspBI	CTAG	2 cut(s)	110, 405
GluI	GCNGC	2 cut(s)	51, 538
GsaI	CCCAGC	1 cut(s)	19
HapII	CCGG	2 cut(s)	54, 585
Hin1II	CATG	4 cut(s)	302, 310, 457, 484
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	2 cut(s)	54, 585
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	2 cut(s)	99, 595
Hpy188I	TCNGA	4 cut(s)	117, 292, 374, 496
Hpy188III	TCNNGA	5 cut(s)	110, 247, 263, 566, 585
Hpy8I	GTNNAC	2 cut(s)	99, 595
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	4 cut(s)	169, 207, 461, 548
HpyCH4V	TGCA	4 cut(s)	78, 310, 383, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 84, 401, 537
HpyF3I	CTNAG	3 cut(s)	351, 572, 603
Hsp92II	CATG	4 cut(s)	302, 310, 457, 484
Kpn2I	TCCGGA	1 cut(s)	584
Kzo9I	GATC	8 cut(s)	112, 186, 216, 282, 314, 374, 416, 587
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	2 cut(s)	62, 549
LweI	GCATC	1 cut(s)	392
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	2 cut(s)	110, 405
MalI	GATC	8 cut(s)	114, 188, 218, 284, 316, 376, 418, 589
MboI	GATC	8 cut(s)	112, 186, 216, 282, 314, 374, 416, 587
MboII	GAAGA	6 cut(s)	286, 289, 292, 369, 390, 496
MflI	RGATCY	4 cut(s)	186, 374, 416, 587
MhlI	GDGCHC	2 cut(s)	306, 573
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	94
MroI	TCCGGA	1 cut(s)	584
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	2 cut(s)	366, 423
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	2 cut(s)	54, 585
MspR9I	CCNGG	2 cut(s)	55, 94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	4 cut(s)	79, 84, 401, 537
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	8 cut(s)	112, 186, 216, 282, 314, 374, 416, 587
NlaIII	CATG	4 cut(s)	302, 310, 457, 484
NlaIV	GGNNCC	4 cut(s)	6, 161, 245, 418
PaeR7I	CTCGAG	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	52, 539
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	573
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	4 cut(s)	6, 161, 245, 418
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PspXI	VCTCGAGB	1 cut(s)	532
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
PsuI	RGATCY	4 cut(s)	186, 374, 416, 587
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	3 cut(s)	91, 209, 337
RsaNI	GTAC	3 cut(s)	90, 208, 336
SacI	GAGCTC	1 cut(s)	573
SaqAI	TTAA	2 cut(s)	366, 423
SatI	GCNGC	2 cut(s)	51, 538
Sau3AI	GATC	8 cut(s)	112, 186, 216, 282, 314, 374, 416, 587
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	55, 94
SduI	GDGCHC	2 cut(s)	306, 573
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	532
SinI	GGWCC	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	532
SmlI	CTYRAG	2 cut(s)	532, 566
SmoI	CTYRAG	2 cut(s)	532, 566
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	48, 82
SspMI	CTAG	2 cut(s)	110, 405
SstI	GAGCTC	1 cut(s)	573
StyD4I	CCNGG	2 cut(s)	53, 92
TaaI	ACNGT	4 cut(s)	169, 207, 461, 548
TaqI	TCGA	2 cut(s)	219, 533
TasI	AATT	1 cut(s)	340
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	2 cut(s)	366, 423
Tru9I	TTAA	2 cut(s)	366, 423
TseI	GCWGC	2 cut(s)	50, 537
TspDTI	ATGAA	2 cut(s)	287, 497
TspGWI	ACGGA	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	159
XbaI	TCTAGA	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	2 cut(s)	110, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.