MD07G1127000.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
17934465 .. 17939327
4863 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1127000.v1.1.491

Sequence Viewer

Length: 1425 bp
ATGAATATGATGCGCCGGCTCAAGAGCATTGCTTCGGGACGTACCTCAGTTTCGTCGGACCCTGGAATTGATTCTACCACAAAAAGAGCAAAGGTGGATCAAGAAAATGAGAAGAAGGCTAATAAACAGTCAAATACTGTTGAGGGAAGTGCCACTGGTCTAGAGCAGCATATGGCTTCAACGTCACTGGAAACTGCTGCGAGCACATCCAGTGTATCTTCAGTAGGTAAGACCGAGACCAAAGAAGACAAATCTAGTAATGATCAGCTTCCCAAAGAAATGCATGAAATGAAAATTAGAGATGAGAAGGCCAACCACCATGATGACAAGGATATGGAAGAAACTATTATAAATGGTAATGGAACAGAAACAGGTCATATAATTGCAACGAAAGTAGGTGGTCAAAATGGACAACCTAAACAGACTATCTCTTACATGGCAGAGCGTGTAGTTGGCACTGGTTCGTTTGGAGTTGTCTTTCAGGCTAAGTGTCTGGAAACAGGTGAAGCAGTTGCAATAAAAAAGGTGTTGCAGGATAAAAGATATAAAAACAGAGAACTTCAAATTATGCGCTTTCTTGACCATCCTAACGTTGTTCAATTGAAGCACTGTTTCTTTTCAACTACTGACAAAGATGAGCTGTACCTCAATCTTGTCCTCGAGTATATATCTGAAACTGTTTACCGGGTCTCAAAGCATTATATCAGGATGAACCAACATATTCCCATTATTTATGTGCAATTATATACATACCAGATTTGTCGTGCATTAAATTACTTGCACCATGTTGTTGGTGTGTGCCATCGTGACATTAAGCCACAAAATTTGCTGGTCAATCCCCACACGCATCAGCTGAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAAGCCAACATATCATATATTTGTTCACGATATTATAGAGCACCAGAACTTATATTTGGGGCTACAGAATATACCACTGCAATTGATATGTGGTCTGTTGGTTGTGTATTTGCTGAGCTTCTTCTTGGACAGCCACTGTTTCCCGGGGAGAGCGGTGTTGATCAGCTGGTGGAGATTATAAAGATTCTTGGGACACCAACCAGAGAAGAAATAAAGTGCATGAATCCCAATTACACAGAGTTCAAGTTTCCTCAGATCAAAGCTCACCCGTGGCACAAGATATTTCACAAGCGAATGCCCCCAGAAGCAGTGGATCTTGTGTCAAGGCTGCTCCAGTACTCACCAAATCTACGTTGTACTGCTTTGGAGGCTTGCGCACACCCCTTCTTTGATGATTTGAGAGACCCGAACGTGAGTTTGCCTAATGGACGAGCATTGCCTCCTTTGTTCAATTTCACAGCTCAAGAATTGGCTGGAGCACCCACTGAACTCCGACATCGTCTAATCCCTGAGCATGCTAGGAATTGA

Protein Analysis

475

Amino Acids

53.51

Weight (kDa)

7.65

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 146 - 429 8.7e-63 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 148 - 347 5.2e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 350, 1076
Acc16I TGCGCA 1 cut(s) 1273
AccB1I GGYRCC 1 cut(s) 889
AccBSI CCGCTC 1 cut(s) 1050
AciI CCGC 1 cut(s) 1050
AclI AACGTT 1 cut(s) 591
AclWI GGATC 2 cut(s) 105, 1218
AcsI RAATTY 1 cut(s) 823
AcuI CTGAAG 2 cut(s) 204, 875
AfaI GTAC 4 cut(s) 43, 644, 1235, 1255
AgsI TTSAA 7 cut(s) 180, 563, 599, 604, 621, 1141, 1348
AjnI CCWGG 2 cut(s) 61, 892
AjuI GAANNNNNNNTTGG 2 cut(s) 936, 968
AluBI AGCT 7 cut(s) 268, 640, 853, 1015, 1063, 1160, 1358
AluI AGCT 7 cut(s) 268, 640, 853, 1015, 1063, 1160, 1358
Alw21I GWGCWC 3 cut(s) 206, 940, 1378
Alw26I GTCTC 3 cut(s) 230, 694, 1293
AlwI GGATC 2 cut(s) 105, 1218
AlwNI CAGNNNCTG 1 cut(s) 1033
Ama87I CYCGRG 2 cut(s) 659, 1040
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 166, 197, 1225
ApoI RAATTY 1 cut(s) 823
Asp700I GAANNNNTTC 1 cut(s) 70
AspLEI GCGC 3 cut(s) 15, 573, 1274
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 3 cut(s) 686, 1041, 1042
AsuHPI GGTGA 4 cut(s) 515, 908, 1154, 1230
AvaI CYCGRG 2 cut(s) 659, 1040
AvaII GGWCC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 889
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 3 cut(s) 206, 940, 1378
BbvI GCAGC 3 cut(s) 178, 184, 1212
BccI CCATC 2 cut(s) 591, 810
BciT130I CCWGG 2 cut(s) 63, 894
BclI TGATCA 2 cut(s) 262, 1057
BcnI CCSGG 3 cut(s) 686, 1041, 1042
BcoDI GTCTC 3 cut(s) 230, 694, 1293
BfaI CTAG 3 cut(s) 161, 255, 1416
BfmI CTRYAG 1 cut(s) 960
BisI GCNGC 3 cut(s) 167, 198, 1226
BlpI GCTNAGC 1 cut(s) 1011
BlsI GCNGC 3 cut(s) 168, 199, 1227
BmcAI AGTACT 1 cut(s) 1235
Bme1390I CCNGG 5 cut(s) 63, 686, 894, 1041, 1042
Bme18I GGWCC 1 cut(s) 58
BmeT110I CYCGRG 2 cut(s) 659, 1040
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 2 cut(s) 60, 891
BmrFI CCNGG 5 cut(s) 63, 686, 894, 1041, 1042
BmsI GCATC 1 cut(s) 856
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 2 cut(s) 1214, 1392
Bpu10I CCTNAGC 1 cut(s) 1407
Bpu1102I GCTNAGC 1 cut(s) 1011
BpuEI CTTGAG 2 cut(s) 5, 1344
BpuMI CCSGG 3 cut(s) 686, 1041, 1042
BsaI GGTCTC 3 cut(s) 230, 694, 1293
BsaJI CCNNGG 4 cut(s) 61, 1040, 1041, 1166
Bse118I RCCGGY 1 cut(s) 15
Bse1I ACTGG 5 cut(s) 160, 192, 210, 463, 1231
Bse3DI GCAATG 2 cut(s) 27, 1331
BseBI CCWGG 2 cut(s) 63, 894
BseDI CCNNGG 4 cut(s) 61, 1040, 1041, 1166
BseGI GGATG 3 cut(s) 206, 583, 714
BseMI GCAATG 2 cut(s) 27, 1331
BseMII CTCAG 4 cut(s) 60, 1002, 1163, 1398
BseNI ACTGG 5 cut(s) 160, 192, 210, 463, 1231
BseXI GCAGC 3 cut(s) 178, 184, 1212
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 1 cut(s) 889
BsiHKAI GWGCWC 3 cut(s) 206, 940, 1378
BsiHKCI CYCGRG 2 cut(s) 659, 1040
BsiSI CCGG 3 cut(s) 16, 685, 1041
BslFI GGGAC 2 cut(s) 51, 1102
BsmAI GTCTC 3 cut(s) 230, 694, 1293
BsmFI GGGAC 2 cut(s) 51, 1102
BsmI GAATGC 1 cut(s) 1197
BsnI GGCC 1 cut(s) 311
Bso31I GGTCTC 3 cut(s) 230, 694, 1293
BsoBI CYCGRG 2 cut(s) 659, 1040
Bsp1286I GDGCHC 3 cut(s) 206, 940, 1378
Bsp143I GATC 5 cut(s) 97, 262, 1057, 1152, 1210
Bsp1720I GCTNAGC 1 cut(s) 1011
BspACI CCGC 1 cut(s) 1050
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 4 cut(s) 59, 1003, 1162, 1399
BspLI GGNNCC 2 cut(s) 60, 891
BspPI GGATC 2 cut(s) 105, 1218
BspT107I GGYRCC 1 cut(s) 889
BspTNI GGTCTC 3 cut(s) 230, 694, 1293
BsrBI CCGCTC 1 cut(s) 1050
BsrDI GCAATG 2 cut(s) 27, 1331
BsrFI RCCGGY 1 cut(s) 15
BsrI ACTGG 5 cut(s) 160, 192, 210, 463, 1231
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 4 cut(s) 61, 1040, 1041, 1166
BssMI GATC 5 cut(s) 97, 262, 1057, 1152, 1210
Bst2UI CCWGG 2 cut(s) 63, 894
Bst4CI ACNGT 5 cut(s) 129, 139, 611, 679, 1035
BstC8I GCNNGC 4 cut(s) 17, 202, 1270, 1413
BstDEI CTNAG 5 cut(s) 46, 486, 1011, 1149, 1407
BstDSI CCRYGG 1 cut(s) 1166
BstF5I GGATG 3 cut(s) 206, 583, 714
BstHHI GCGC 3 cut(s) 15, 573, 1274
BstKTI GATC 5 cut(s) 100, 265, 1060, 1155, 1213
BstMAI GTCTC 3 cut(s) 230, 694, 1293
BstMBI GATC 5 cut(s) 97, 262, 1057, 1152, 1210
BstMWI GCNNNNNNNGC 1 cut(s) 1265
BstNI CCWGG 2 cut(s) 63, 894
BstNSI RCATGY 1 cut(s) 1415
BstSCI CCNGG 5 cut(s) 61, 684, 892, 1039, 1040
BstSFI CTRYAG 1 cut(s) 960
BstV1I GCAGC 3 cut(s) 178, 184, 1212
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 1210
BstXI CCANNNNNNTGG 1 cut(s) 791
BstYI RGATCY 1 cut(s) 1210
BsuRI GGCC 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 1166
BtsCI GGATG 3 cut(s) 206, 583, 714
BtsI GCAGTG 2 cut(s) 972, 1212
BtsIMutI CAGTG 9 cut(s) 153, 185, 217, 456, 607, 972, 1031, 1212, 1380
Cac8I GCNNGC 4 cut(s) 17, 202, 1270, 1413
CaiI CAGNNNCTG 1 cut(s) 1033
CfoI GCGC 3 cut(s) 15, 573, 1274
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 58
Cfr9I CCCGGG 1 cut(s) 1040
Csp6I GTAC 4 cut(s) 42, 643, 1234, 1254
CspCI CAANNNNNGTGG 4 cut(s) 807, 842, 961, 996
CviAII CATG 6 cut(s) 284, 320, 436, 785, 1117, 1412
CviQI GTAC 4 cut(s) 42, 643, 1234, 1254
DdeI CTNAG 5 cut(s) 46, 486, 1011, 1149, 1407
DpnI GATC 5 cut(s) 99, 264, 1059, 1154, 1212
DpnII GATC 5 cut(s) 97, 262, 1057, 1152, 1210
Eco31I GGTCTC 3 cut(s) 230, 694, 1293
Eco47I GGWCC 1 cut(s) 58
Eco57I CTGAAG 2 cut(s) 204, 875
Eco88I CYCGRG 2 cut(s) 659, 1040
EcoRII CCWGG 2 cut(s) 61, 892
EcoT22I ATGCAT 1 cut(s) 285
FaeI CATG 6 cut(s) 287, 323, 439, 788, 1120, 1415
FaqI GGGAC 2 cut(s) 51, 1102
FatI CATG 6 cut(s) 283, 319, 435, 784, 1116, 1411
FauNDI CATATG 1 cut(s) 171
FbaI TGATCA 2 cut(s) 262, 1057
Fnu4HI GCNGC 3 cut(s) 167, 198, 1226
FokI GGATG 3 cut(s) 193, 570, 721
Fsp4HI GCNGC 3 cut(s) 167, 198, 1226
FspBI CTAG 3 cut(s) 161, 255, 1416
FspI TGCGCA 1 cut(s) 1273
GlaI GCGC 3 cut(s) 14, 572, 1273
GluI GCNGC 3 cut(s) 167, 198, 1226
GsuI CTGGAG 2 cut(s) 1214, 1392
HaeIII GGCC 1 cut(s) 311
HapII CCGG 3 cut(s) 16, 685, 1041
HhaI GCGC 3 cut(s) 15, 573, 1274
Hin1II CATG 6 cut(s) 287, 323, 439, 788, 1120, 1415
Hin6I GCGC 3 cut(s) 13, 571, 1272
HinP1I GCGC 3 cut(s) 13, 571, 1272
HinfI GANTC 3 cut(s) 71, 1081, 1120
HpaII CCGG 3 cut(s) 16, 685, 1041
HphI GGTGA 4 cut(s) 515, 908, 1154, 1230
Hpy166II GTNNAC 2 cut(s) 682, 923
Hpy188I TCNGA 4 cut(s) 58, 673, 1152, 1391
Hpy8I GTNNAC 2 cut(s) 682, 923
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 3 cut(s) 109, 301, 1291
HpyCH4III ACNGT 5 cut(s) 129, 139, 611, 679, 1035
HpyCH4IV ACGT 5 cut(s) 40, 182, 591, 1249, 1308
HpyF10VI GCNNNNNNNGC 1 cut(s) 1265
HpyF3I CTNAG 5 cut(s) 46, 486, 1011, 1149, 1407
HpySE526I ACGT 5 cut(s) 40, 182, 591, 1249, 1308
Hsp92II CATG 6 cut(s) 287, 323, 439, 788, 1120, 1415
HspAI GCGC 3 cut(s) 13, 571, 1272
KroI GCCGGC 1 cut(s) 15
KroNI GCCGGC 1 cut(s) 17
Ksp22I TGATCA 2 cut(s) 262, 1057
Kzo9I GATC 5 cut(s) 97, 262, 1057, 1152, 1210
LmnI GCTCC 2 cut(s) 1233, 1373
Lsp1109I GCAGC 3 cut(s) 178, 184, 1212
LweI GCATC 1 cut(s) 856
MaeI CTAG 3 cut(s) 161, 255, 1416
MaeII ACGT 5 cut(s) 40, 182, 591, 1249, 1308
MaeIII GTNAC 2 cut(s) 183, 806
MalI GATC 5 cut(s) 99, 264, 1059, 1154, 1212
MbiI CCGCTC 1 cut(s) 1050
MboI GATC 5 cut(s) 97, 262, 1057, 1152, 1210
MboII GAAGA 7 cut(s) 124, 210, 257, 350, 868, 1010, 1115
MfeI CAATTG 2 cut(s) 599, 978
MflI RGATCY 1 cut(s) 1210
MhlI GDGCHC 3 cut(s) 206, 940, 1378
MmeI TCCRAC 2 cut(s) 36, 1414
MnlI CCTC 7 cut(s) 55, 136, 656, 668, 1158, 1258, 1347
Mph1103I ATGCAT 1 cut(s) 285
MroNI GCCGGC 1 cut(s) 15
MroXI GAANNNNTTC 1 cut(s) 70
MseI TTAA 2 cut(s) 770, 813
MslI CAYNNNNRTG 1 cut(s) 321
MspA1I CMGCKG 2 cut(s) 853, 1063
MspI CCGG 3 cut(s) 16, 685, 1041
MspR9I CCNGG 5 cut(s) 63, 686, 894, 1041, 1042
MunI CAATTG 2 cut(s) 599, 978
Mva1269I GAATGC 1 cut(s) 1197
MvaI CCWGG 2 cut(s) 63, 894
MwoI GCNNNNNNNGC 1 cut(s) 1265
NaeI GCCGGC 1 cut(s) 17
NciI CCSGG 3 cut(s) 686, 1041, 1042
NdeI CATATG 1 cut(s) 171
NdeII GATC 5 cut(s) 97, 262, 1057, 1152, 1210
NgoMIV GCCGGC 1 cut(s) 15
NlaIII CATG 6 cut(s) 287, 323, 439, 788, 1120, 1415
NlaIV GGNNCC 2 cut(s) 60, 891
NmuCI GTSAC 2 cut(s) 183, 806
NsbI TGCGCA 1 cut(s) 1273
NsiI ATGCAT 1 cut(s) 285
NspI RCATGY 1 cut(s) 1415
PaeI GCATGC 1 cut(s) 1415
PaeR7I CTCGAG 1 cut(s) 659
PctI GAATGC 1 cut(s) 1197
PdiI GCCGGC 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 70
PfeI GAWTC 3 cut(s) 71, 1081, 1120
PflFI GACNNNGTC 1 cut(s) 1395
PkrI GCNGC 3 cut(s) 168, 199, 1227
PsiI TTATAA 2 cut(s) 350, 1076
Psp1406I AACGTT 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 61, 892
PspGI CCWGG 2 cut(s) 61, 892
PspN4I GGNNCC 2 cut(s) 60, 891
PspPI GGNCC 1 cut(s) 58
PspXI VCTCGAGB 1 cut(s) 659
PstNI CAGNNNCTG 1 cut(s) 1033
PsuI RGATCY 1 cut(s) 1210
PsyI GACNNNGTC 1 cut(s) 1395
PvuII CAGCTG 2 cut(s) 853, 1063
RsaI GTAC 4 cut(s) 43, 644, 1235, 1255
RsaNI GTAC 4 cut(s) 42, 643, 1234, 1254
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 770, 813
SatI GCNGC 3 cut(s) 167, 198, 1226
Sau3AI GATC 5 cut(s) 97, 262, 1057, 1152, 1210
Sau96I GGNCC 1 cut(s) 58
ScaI AGTACT 1 cut(s) 1235
ScrFI CCNGG 5 cut(s) 63, 686, 894, 1041, 1042
SduI GDGCHC 3 cut(s) 206, 940, 1378
SfaNI GCATC 1 cut(s) 856
SfcI CTRYAG 1 cut(s) 960
Sfr274I CTCGAG 1 cut(s) 659
SinI GGWCC 1 cut(s) 58
SlaI CTCGAG 1 cut(s) 659
SmaI CCCGGG 1 cut(s) 1042
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 3 cut(s) 20, 659, 1359
SmoI CTYRAG 3 cut(s) 20, 659, 1359
SphI GCATGC 1 cut(s) 1415
SsiI CCGC 1 cut(s) 1050
SspMI CTAG 3 cut(s) 161, 255, 1416
StyD4I CCNGG 5 cut(s) 61, 684, 892, 1039, 1040
TaaI ACNGT 5 cut(s) 129, 139, 611, 679, 1035
TaiI ACGT 5 cut(s) 43, 185, 594, 1252, 1311
TaqI TCGA 1 cut(s) 660
TaqII GACCGA 1 cut(s) 248
TatI WGTACW 2 cut(s) 1233, 1253
TfiI GAWTC 3 cut(s) 71, 1081, 1120
Tru1I TTAA 2 cut(s) 770, 813
Tru9I TTAA 2 cut(s) 770, 813
TscAI CASTG 9 cut(s) 160, 192, 217, 463, 614, 979, 1038, 1212, 1387
TseFI GTSAC 2 cut(s) 183, 806
TseI GCWGC 3 cut(s) 166, 197, 1225
Tsp45I GTSAC 2 cut(s) 183, 806
TspDTI ATGAA 5 cut(s) 17, 300, 305, 725, 1133
TspMI CCCGGG 1 cut(s) 1040
TspRI CASTG 9 cut(s) 160, 192, 217, 463, 614, 979, 1038, 1212, 1387
Tth111I GACNNNGTC 1 cut(s) 1395
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 823
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 1 cut(s) 1415
XhoI CTCGAG 1 cut(s) 659
XmaI CCCGGG 1 cut(s) 1040
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 3 cut(s) 161, 255, 1416
ZrmI AGTACT 1 cut(s) 1235
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.