Rmu_ssc0000439.1_g000001
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000439.1
Physical Location & Seq
Forward (+)
1 .. 4774
4774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000439.1_g000001.1.cds

Sequence Viewer

Length: 1539 bp
ggctacttccgtaattccgcacagcaaaaccgcgaacacccgccgtccgatccccaaaatcacacgcaatcgacggctggaccccccagtttgacccgtggcggccggattggagagacggaagcggtgaagaagatgaatatgatgcgtaggctcaagagcattgcgtcgggtcggacctctgtttcgtcggacccgagtggtgattccagctcaaagagatcaaagtttgatcaacaaactgaaaagaaggttactgttgagagaagagccaccgaccagattacaaaatcaacatcaatggaatcagctgcaagcacgtccagtgcatcttcagtggctaagatacaggccaaagaagaaaaatctactgttgatcaacttccgaaagatatgcaccaaatgaatattagagatgataaggtgaacaaccatgttgaaaaggagatggaagaaactatcataaatggtaatggaacagaaacaggccatatcattgcgacgacagtaggcggtcagaatggacaacctaaacagacaatctcttatatggcagagcgcgtagttggcactggttcatttggagtcgtctttcaggccaagtgtctggaaacaggtgacgcagttgcaataaaaaaggtgctgcaggataaaagatataaaaatagagaacttcagatcatgcgctcactggagcatcccaatgttgttcaattgaagaattgtttcttttcaactactgaaaaggacgagctgtaccttaaccttgtccttgaatatatatctgagactgtttatagagtgtcaaagcattatgtcaggatgaaccaacatgttcccattatttatgtgcagttgtacacataccagatttgtcgggcattaaattacttgcaccatgttgttggtgtgtgtcatcgtgatattaagccacagaatttactggtcaatccccacactcatcagctaaagatatgtgattttgggagcgcaaagatgctggtgccaggtgaagccaacatatcatatatttgctcacgatattatagagctccagaactcatatttggagctacagaatatacaactgccattgatatgtggtctgttggttgtgtatttgctgagcttcttcttgggcagccactgtttcctggggagagtggtgttgatcagctggtggaaatcataaagattcttggaacaccaaccagagaagaaatcaagtgcatgaatccaaactacactgagttcaagtttcctcaaattaaagctcacccctggcataagatattccataagcgaatgccctctgaagctgtggatctcatatcaaggctgctccagtattcaccaaatctgcgttgtactgctttagaggcttgtgcgcaccctttctttgatgatttgagagacccaaacgttagcttgcctaatggacgggcggtaccttctttgttcgattttacagctcaagaattggccggtgcatccactgaactccgacatcgtctcatccccgagcatgcaaggacttga

Protein Analysis

512

Amino Acids

57.63

Weight (kDa)

8.64

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1389
Acc65I GGTACC 1 cut(s) 1447
AccB1I GGYRCC 2 cut(s) 1003, 1447
AccII CGCG 2 cut(s) 33, 561
AciI CCGC 7 cut(s) 18, 31, 41, 102, 125, 513, 1445
AclI AACGTT 1 cut(s) 1422
AclWI GGATC 2 cut(s) 44, 1332
AcoI YGGCCR 2 cut(s) 103, 1482
AcsI RAATTY 1 cut(s) 937
AcuI CTGAAG 3 cut(s) 318, 659, 1335
AfaI GTAC 4 cut(s) 758, 860, 1369, 1449
AflIII ACRYGT 1 cut(s) 832
AgsI TTSAA 6 cut(s) 440, 713, 718, 735, 776, 1255
AjiI CACGTC 1 cut(s) 321
AjnI CCWGG 3 cut(s) 1006, 1153, 1280
AjuI GAANNNNNNNTTGG 2 cut(s) 1050, 1082
Alw21I GWGCWC 1 cut(s) 1054
Alw26I GTCTC 4 cut(s) 110, 782, 1407, 1517
AlwI GGATC 2 cut(s) 44, 1332
AlwNI CAGNNNCTG 1 cut(s) 1147
Ama87I CYCGRG 2 cut(s) 196, 1520
AoxI GGCC 5 cut(s) 103, 351, 487, 597, 1482
ApeKI GCWGC 4 cut(s) 311, 643, 1141, 1339
ApoI RAATTY 1 cut(s) 937
ArsI GACNNNNNNTTYG 2 cut(s) 169, 201
Asp700I GAANNNNTTC 1 cut(s) 725
Asp718I GGTACC 1 cut(s) 1447
AspLEI GCGC 4 cut(s) 561, 687, 992, 1390
AspS9I GGNCC 3 cut(s) 80, 177, 193
AsuHPI GGTGA 7 cut(s) 139, 215, 436, 629, 1022, 1268, 1344
AvaI CYCGRG 2 cut(s) 196, 1520
AvaII GGWCC 3 cut(s) 80, 177, 193
BanI GGYRCC 2 cut(s) 1003, 1447
BanII GRGCYC 1 cut(s) 1054
Bbv12I GWGCWC 1 cut(s) 1054
BbvI GCAGC 4 cut(s) 298, 630, 1153, 1326
BccI CCATC 1 cut(s) 442
BceAI ACGGC 2 cut(s) 28, 90
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciT130I CCWGG 3 cut(s) 1008, 1155, 1282
BclI TGATCA 3 cut(s) 232, 376, 1171
BcoDI GTCTC 4 cut(s) 110, 782, 1407, 1517
BfmI CTRYAG 2 cut(s) 644, 1074
BisI GCNGC 5 cut(s) 103, 312, 644, 1142, 1340
BlpI GCTNAGC 1 cut(s) 1125
BlsI GCNGC 5 cut(s) 104, 313, 645, 1143, 1341
Bme1390I CCNGG 3 cut(s) 1008, 1155, 1282
Bme18I GGWCC 3 cut(s) 80, 177, 193
BmeT110I CYCGRG 2 cut(s) 196, 1520
BmgBI CACGTC 1 cut(s) 321
BmgT120I GGNCC 3 cut(s) 80, 177, 193
BmiI GGNNCC 4 cut(s) 82, 195, 1005, 1449
BmrFI CCNGG 3 cut(s) 1008, 1155, 1282
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 5 cut(s) 135, 338, 706, 987, 1499
BmuI ACTGGG 1 cut(s) 81
BpmI CTGGAG 3 cut(s) 713, 1038, 1328
Bpu1102I GCTNAGC 1 cut(s) 1125
BpuEI CTTGAG 2 cut(s) 140, 1458
BsaI GGTCTC 1 cut(s) 1407
BsaJI CCNNGG 3 cut(s) 97, 1154, 1280
Bse118I RCCGGY 1 cut(s) 1484
Bse1I ACTGG 6 cut(s) 87, 324, 577, 696, 948, 1345
Bse3DI GCAATG 2 cut(s) 162, 495
BseBI CCWGG 3 cut(s) 1008, 1155, 1282
BseDI CCNNGG 3 cut(s) 97, 1154, 1280
BseGI GGATG 4 cut(s) 697, 828, 1490, 1515
BseMI GCAATG 2 cut(s) 162, 495
BseMII CTCAG 3 cut(s) 777, 1116, 1239
BseNI ACTGG 6 cut(s) 87, 324, 577, 696, 948, 1345
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 4 cut(s) 298, 630, 1153, 1326
BsgI GTGCAG 1 cut(s) 872
Bsh1236I CGCG 2 cut(s) 33, 561
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 5 cut(s) 105, 353, 489, 599, 1484
BshNI GGYRCC 2 cut(s) 1003, 1447
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 1054
BsiHKCI CYCGRG 2 cut(s) 196, 1520
BsiSI CCGG 2 cut(s) 106, 1485
BsmAI GTCTC 4 cut(s) 110, 782, 1407, 1517
BsmBI CGTCTC 2 cut(s) 110, 1517
BsmI GAATGC 1 cut(s) 1311
BsnI GGCC 5 cut(s) 105, 353, 489, 599, 1484
Bso31I GGTCTC 1 cut(s) 1407
BsoBI CYCGRG 2 cut(s) 196, 1520
Bsp1286I GDGCHC 1 cut(s) 1054
Bsp1407I TGTACA 1 cut(s) 858
Bsp143I GATC 7 cut(s) 49, 221, 232, 376, 678, 1171, 1324
Bsp1720I GCTNAGC 1 cut(s) 1125
BspACI CCGC 7 cut(s) 18, 31, 41, 102, 125, 513, 1445
BspANI GGCC 5 cut(s) 105, 353, 489, 599, 1484
BspCNI CTCAG 3 cut(s) 778, 1117, 1240
BspFNI CGCG 2 cut(s) 33, 561
BspLI GGNNCC 4 cut(s) 82, 195, 1005, 1449
BspMAI CTGCAG 1 cut(s) 648
BspPI GGATC 2 cut(s) 44, 1332
BspQI GCTCTTC 1 cut(s) 262
BspT107I GGYRCC 2 cut(s) 1003, 1447
BspTNI GGTCTC 1 cut(s) 1407
BsrDI GCAATG 2 cut(s) 162, 495
BsrFI RCCGGY 1 cut(s) 1484
BsrGI TGTACA 1 cut(s) 858
BsrI ACTGG 6 cut(s) 87, 324, 577, 696, 948, 1345
BssAI RCCGGY 1 cut(s) 1484
BssECI CCNNGG 3 cut(s) 97, 1154, 1280
BssMI GATC 7 cut(s) 49, 221, 232, 376, 678, 1171, 1324
Bst2UI CCWGG 3 cut(s) 1008, 1155, 1282
Bst4CI ACNGT 5 cut(s) 259, 373, 508, 793, 1149
Bst6I CTCTTC 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 858
BstC8I GCNNGC 3 cut(s) 316, 1430, 1527
BstDEI CTNAG 4 cut(s) 342, 786, 1125, 1248
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 4 cut(s) 697, 828, 1490, 1515
BstFNI CGCG 2 cut(s) 33, 561
BstHHI GCGC 4 cut(s) 561, 687, 992, 1390
BstKTI GATC 7 cut(s) 52, 224, 235, 379, 681, 1174, 1327
BstMAI GTCTC 4 cut(s) 110, 782, 1407, 1517
BstMBI GATC 7 cut(s) 49, 221, 232, 376, 678, 1171, 1324
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 567, 1379
BstNI CCWGG 3 cut(s) 1008, 1155, 1282
BstNSI RCATGY 2 cut(s) 836, 1529
BstSCI CCNGG 3 cut(s) 1006, 1153, 1280
BstSFI CTRYAG 2 cut(s) 644, 1074
BstUI CGCG 2 cut(s) 33, 561
BstV1I GCAGC 4 cut(s) 298, 630, 1153, 1326
BstX2I RGATCY 1 cut(s) 1324
BstXI CCANNNNNNTGG 2 cut(s) 607, 905
BstYI RGATCY 1 cut(s) 1324
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 5 cut(s) 105, 353, 489, 599, 1484
BtgI CCRYGG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 321
BtsCI GGATG 4 cut(s) 697, 828, 1490, 1515
BtsIMutI CAGTG 7 cut(s) 331, 342, 570, 689, 1145, 1245, 1494
Cac8I GCNNGC 3 cut(s) 316, 1430, 1527
CaiI CAGNNNCTG 1 cut(s) 1147
CfoI GCGC 4 cut(s) 561, 687, 992, 1390
Cfr10I RCCGGY 1 cut(s) 1484
Cfr13I GGNCC 3 cut(s) 80, 177, 193
CseI GACGC 2 cut(s) 156, 629
Csp6I GTAC 4 cut(s) 757, 859, 1368, 1448
CviAII CATG 6 cut(s) 434, 682, 833, 899, 1231, 1526
CviQI GTAC 4 cut(s) 757, 859, 1368, 1448
DdeI CTNAG 4 cut(s) 342, 786, 1125, 1248
DpnI GATC 7 cut(s) 51, 223, 234, 378, 680, 1173, 1326
DpnII GATC 7 cut(s) 49, 221, 232, 376, 678, 1171, 1324
EaeI YGGCCR 2 cut(s) 103, 1482
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 1052
EclXI CGGCCG 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 1054
Eco31I GGTCTC 1 cut(s) 1407
Eco47I GGWCC 3 cut(s) 80, 177, 193
Eco52I CGGCCG 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 1052
Eco57I CTGAAG 3 cut(s) 318, 659, 1335
Eco88I CYCGRG 2 cut(s) 196, 1520
EcoICRI GAGCTC 1 cut(s) 1052
EcoRII CCWGG 3 cut(s) 1006, 1153, 1280
EcoT38I GRGCYC 1 cut(s) 1054
Esp3I CGTCTC 2 cut(s) 110, 1517
FaeI CATG 6 cut(s) 437, 685, 836, 902, 1234, 1529
FatI CATG 6 cut(s) 433, 681, 832, 898, 1230, 1525
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 3 cut(s) 232, 376, 1171
Fnu4HI GCNGC 5 cut(s) 103, 312, 644, 1142, 1340
FokI GGATG 4 cut(s) 684, 835, 1477, 1502
FriOI GRGCYC 1 cut(s) 1054
Fsp4HI GCNGC 5 cut(s) 103, 312, 644, 1142, 1340
FspAI RTGCGCAY 1 cut(s) 1389
FspI TGCGCA 1 cut(s) 1389
GlaI GCGC 4 cut(s) 560, 686, 991, 1389
GluI GCNGC 5 cut(s) 103, 312, 644, 1142, 1340
GsuI CTGGAG 3 cut(s) 713, 1038, 1328
HaeIII GGCC 5 cut(s) 105, 353, 489, 599, 1484
HapII CCGG 2 cut(s) 106, 1485
HgaI GACGC 2 cut(s) 156, 629
HhaI GCGC 4 cut(s) 561, 687, 992, 1390
Hin1II CATG 6 cut(s) 437, 685, 836, 902, 1234, 1529
Hin6I GCGC 4 cut(s) 559, 685, 990, 1388
HinP1I GCGC 4 cut(s) 559, 685, 990, 1388
HinfI GANTC 5 cut(s) 206, 305, 585, 1195, 1234
HpaII CCGG 2 cut(s) 106, 1485
HphI GGTGA 7 cut(s) 139, 215, 436, 629, 1022, 1268, 1344
Hpy166II GTNNAC 2 cut(s) 427, 861
Hpy188I TCNGA 9 cut(s) 49, 177, 193, 387, 519, 678, 787, 1315, 1505
Hpy188III TCNNGA 7 cut(s) 157, 608, 820, 920, 1038, 1055, 1475
Hpy8I GTNNAC 2 cut(s) 427, 861
Hpy99I CGWCG 4 cut(s) 76, 172, 193, 505
HpyAV CCTTC 2 cut(s) 244, 1461
HpyCH4III ACNGT 5 cut(s) 259, 373, 508, 793, 1149
HpyCH4IV ACGT 2 cut(s) 320, 1422
HpyF10VI GCNNNNNNNGC 2 cut(s) 567, 1379
HpyF3I CTNAG 4 cut(s) 342, 786, 1125, 1248
HpySE526I ACGT 2 cut(s) 320, 1422
Hsp92II CATG 6 cut(s) 437, 685, 836, 902, 1234, 1529
HspAI GCGC 4 cut(s) 559, 685, 990, 1388
KpnI GGTACC 1 cut(s) 1451
Ksp22I TGATCA 3 cut(s) 232, 376, 1171
Kzo9I GATC 7 cut(s) 49, 221, 232, 376, 678, 1171, 1324
LguI GCTCTTC 1 cut(s) 262
LmnI GCTCC 5 cut(s) 694, 987, 1057, 1070, 1347
Lsp1109I GCAGC 4 cut(s) 298, 630, 1153, 1326
LweI GCATC 5 cut(s) 135, 338, 706, 987, 1499
MaeII ACGT 2 cut(s) 320, 1422
MaeIII GTNAC 2 cut(s) 253, 617
MalI GATC 7 cut(s) 51, 223, 234, 378, 680, 1173, 1326
MboI GATC 7 cut(s) 49, 221, 232, 376, 678, 1171, 1324
MboII GAAGA 9 cut(s) 142, 145, 279, 324, 371, 464, 730, 1124, 1229
MfeI CAATTG 1 cut(s) 713
MflI RGATCY 1 cut(s) 1324
MhlI GDGCHC 1 cut(s) 1054
MluCI AATT 7 cut(s) 13, 713, 721, 886, 937, 1266, 1478
MlyI GAGTC 1 cut(s) 594
MmeI TCCRAC 3 cut(s) 155, 171, 1528
MnlI CCTC 4 cut(s) 190, 1272, 1321, 1372
MroXI GAANNNNTTC 1 cut(s) 725
MseI TTAA 4 cut(s) 762, 884, 927, 1269
MslI CAYNNNNRTG 2 cut(s) 702, 1097
MspA1I CMGCKG 2 cut(s) 311, 1177
MspI CCGG 2 cut(s) 106, 1485
MspR9I CCNGG 3 cut(s) 1008, 1155, 1282
MunI CAATTG 1 cut(s) 713
Mva1269I GAATGC 1 cut(s) 1311
MvaI CCWGG 3 cut(s) 1008, 1155, 1282
MvnI CGCG 2 cut(s) 33, 561
MwoI GCNNNNNNNGC 2 cut(s) 567, 1379
NdeII GATC 7 cut(s) 49, 221, 232, 376, 678, 1171, 1324
NlaIII CATG 6 cut(s) 437, 685, 836, 902, 1234, 1529
NlaIV GGNNCC 4 cut(s) 82, 195, 1005, 1449
NmuCI GTSAC 1 cut(s) 617
NsbI TGCGCA 1 cut(s) 1389
NspI RCATGY 2 cut(s) 836, 1529
PaeI GCATGC 1 cut(s) 1529
PciI ACATGT 1 cut(s) 832
PciSI GCTCTTC 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 194
PctI GAATGC 1 cut(s) 1311
PdmI GAANNNNTTC 1 cut(s) 725
PfeI GAWTC 4 cut(s) 206, 305, 1195, 1234
PflFI GACNNNGTC 1 cut(s) 1509
PkrI GCNGC 5 cut(s) 104, 313, 645, 1143, 1341
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
PscI ACATGT 1 cut(s) 832
Psp124BI GAGCTC 1 cut(s) 1054
Psp1406I AACGTT 1 cut(s) 1422
Psp6I CCWGG 3 cut(s) 1006, 1153, 1280
PspGI CCWGG 3 cut(s) 1006, 1153, 1280
PspN4I GGNNCC 4 cut(s) 82, 195, 1005, 1449
PspPI GGNCC 3 cut(s) 80, 177, 193
PstI CTGCAG 1 cut(s) 648
PstNI CAGNNNCTG 1 cut(s) 1147
PsuI RGATCY 1 cut(s) 1324
PsyI GACNNNGTC 1 cut(s) 1509
PvuII CAGCTG 2 cut(s) 311, 1177
RsaI GTAC 4 cut(s) 758, 860, 1369, 1449
RsaNI GTAC 4 cut(s) 757, 859, 1368, 1448
RseI CAYNNNNRTG 2 cut(s) 702, 1097
SacI GAGCTC 1 cut(s) 1054
SapI GCTCTTC 1 cut(s) 262
SaqAI TTAA 4 cut(s) 762, 884, 927, 1269
SatI GCNGC 5 cut(s) 103, 312, 644, 1142, 1340
Sau3AI GATC 7 cut(s) 49, 221, 232, 376, 678, 1171, 1324
Sau96I GGNCC 3 cut(s) 80, 177, 193
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 3 cut(s) 1008, 1155, 1282
SduI GDGCHC 1 cut(s) 1054
SfaNI GCATC 5 cut(s) 135, 338, 706, 987, 1499
SfcI CTRYAG 2 cut(s) 644, 1074
SinI GGWCC 3 cut(s) 80, 177, 193
SmiMI CAYNNNNRTG 2 cut(s) 702, 1097
SmlI CTYRAG 2 cut(s) 155, 1473
SmoI CTYRAG 2 cut(s) 155, 1473
SphI GCATGC 1 cut(s) 1529
Sse9I AATT 7 cut(s) 13, 713, 721, 886, 937, 1266, 1478
SsiI CCGC 7 cut(s) 18, 31, 41, 102, 125, 513, 1445
SspI AATATT 1 cut(s) 409
SstI GAGCTC 1 cut(s) 1054
StyD4I CCNGG 3 cut(s) 1006, 1153, 1280
TaaI ACNGT 5 cut(s) 259, 373, 508, 793, 1149
TaiI ACGT 2 cut(s) 323, 1425
TaqI TCGA 2 cut(s) 71, 1461
TasI AATT 7 cut(s) 13, 713, 721, 886, 937, 1266, 1478
TatI WGTACW 2 cut(s) 858, 1367
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 4 cut(s) 206, 305, 1195, 1234
Tru1I TTAA 4 cut(s) 762, 884, 927, 1269
Tru9I TTAA 4 cut(s) 762, 884, 927, 1269
TscAI CASTG 7 cut(s) 331, 342, 577, 696, 1152, 1252, 1501
TseFI GTSAC 1 cut(s) 617
TseI GCWGC 4 cut(s) 311, 643, 1141, 1339
Tsp45I GTSAC 1 cut(s) 617
TspDTI ATGAA 5 cut(s) 152, 419, 567, 839, 1247
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 7 cut(s) 331, 342, 577, 696, 1152, 1252, 1501
Tth111I GACNNNGTC 1 cut(s) 1509
VpaK11BI GGWCC 3 cut(s) 80, 177, 193
XapI RAATTY 1 cut(s) 937
XceI RCATGY 2 cut(s) 836, 1529
XmnI GAANNNNTTC 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.