Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008920

Physical Location & Seq

Genomic Coordinates Forward (+)

48185880 .. 48193226

Gene Structure 7347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG228000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAATATGATGCGTAGGCTCAAGAGCATTGCGTCGGGTCGGACCTCTGTTTCGTCGGACCCGAGTGGTGATTCCAGCTCAAAGAGATCAAAGTTTGATCAACAAACTGAAAAGAAGGTTACTGTTGAGAGAAGAGCCACTGACCAGATTACAAAATCAACATCAATGGAATCAGCTGCAAGCACGTCCAGTGCATCTTCAGTAGCTAAGATACAGGCCAAAAAAGAAAAATCTACTGTTGATCAACTTCCGAAAGATATGCATCAAATGAATATTAGAGATGATAAGGTGAACAACCATGTTGAAAAGGATATGGAAGAAACTATCATAAATGGTAATGGAACAGAAACAGGCCATATCATTGCGACGACTGTAGGCGGTCAAAATGGACAGCCTAAACAGACAATCTCTTATATGGCAGAGCGCGTAGTTGGCACTGGTTCATTTGGAGTCGTCTTTCAGGCCAAGTGTCTGGAAACAGGTGACGCAGTTGCAATAAAAAAGGTGCTGCAGGATAAAAGATATAAAAATAGAGAACTTCAGATCATGCGCTCACTGGACCATCCCAATGTTGTTCAATTGAAGCATTGTTTCTTTTCAACTACTGAAAAGGACGAGCTGTACCTTAACCTTGTCCTTGAATATATATCTGAGACTGTTTACAGAGTGTCAAAGCATTATGTCAGGATGAACCAACATGTTCCCATTATTTTTGTGCAGTTGTACACATACCAGATTTGTCGGGCATTAAATTACTTGCACCATGTTGTTGGTGTGTGTCATCGTGATATTAAGCCACAGAATTTACTGGTCAATCCCCACACTCATCAGCTAAAGATATGTGATTTTGGGAGCGCAAAGATGCTGGTGCCAGGTGAAGCCAACATATCATATATTTGCTCACGATATTATAGAGCTCCAGAACTCATATTTGGAGCTACAGAATATACAACTGCCATTGATATGTGGTCTGTTGGTTGTGTATTTGCTGAGCTTCTTCTTGGGCAGCCACTGTTTCCAGGGGAGAGTGGTGTTGATCAGCTGGTGGAAATCATAAAGATTCTTGGAACACCAACCAGAGAAGAAATCAAGTGCATGAATCCAAACTACACTGAGTTCAAGTTTCCTCAAATTAAAGCTCACCCCTGGCATAAGGTCTGTCCAGTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009987 GO:0010033 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050896 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

390

Amino Acids

44.01

Weight (kDa)

8.79

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	139 - 362	3.3e-55	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	141 - 337	2e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61160 AT3G61160 AT3G61160 AT3G61160 AT3G61160 AT3G61160 AT4G00720
fragaria_vesca	FvH4_7g13360 FvH4_7g13360
malus_domestica	MD01G1050100.v1.1 MD07G1127000.v1.1
prunus_persica	Prupe.2G157000_v2.0.a1 Prupe.2G157000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352681
rosa_laevigata	RLG00000028321
rosa_multiflora	Rmu_ssc0000439.1_g000001
rosa_roxburghii	Rroxscaffold_4G00302480
rosa_rugosa	Rorug01G0231000
rosa_samantha	Rh1AG244000 Rh1BG214700 Rh1CG228000 Rh1DG240800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	868
AccII	CGCG	1 cut(s)	426
AciI	CCGC	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	802
AcuI	CTGAAG	2 cut(s)	183, 524
AfaI	GTAC	2 cut(s)	623, 725
AflIII	ACRYGT	1 cut(s)	697
AgsI	TTSAA	6 cut(s)	305, 578, 583, 600, 641, 1120
AjiI	CACGTC	1 cut(s)	186
AjnI	CCWGG	3 cut(s)	871, 1018, 1145
AjuI	GAANNNNNNNTTGG	2 cut(s)	915, 947
Alw21I	GWGCWC	1 cut(s)	919
Alw26I	GTCTC	1 cut(s)	647
AlwNI	CAGNNNCTG	1 cut(s)	1012
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	3 cut(s)	216, 352, 462
ApeKI	GCWGC	3 cut(s)	176, 508, 1006
ApoI	RAATTY	1 cut(s)	802
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AspLEI	GCGC	3 cut(s)	426, 552, 857
AspS9I	GGNCC	3 cut(s)	42, 58, 559
AsuHPI	GGTGA	5 cut(s)	80, 301, 494, 887, 1133
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	3 cut(s)	42, 58, 559
BanI	GGYRCC	1 cut(s)	868
BanII	GRGCYC	1 cut(s)	919
Bbv12I	GWGCWC	1 cut(s)	919
BbvI	GCAGC	3 cut(s)	163, 495, 1018
BccI	CCATC	1 cut(s)	570
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	3 cut(s)	873, 1020, 1147
BclI	TGATCA	3 cut(s)	97, 241, 1036
BcoDI	GTCTC	1 cut(s)	647
BfmI	CTRYAG	3 cut(s)	372, 509, 939
BisI	GCNGC	3 cut(s)	177, 509, 1007
BlpI	GCTNAGC	1 cut(s)	990
BlsI	GCNGC	3 cut(s)	178, 510, 1008
Bme1390I	CCNGG	3 cut(s)	873, 1020, 1147
Bme18I	GGWCC	3 cut(s)	42, 58, 559
BmeT110I	CYCGRG	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	186
BmgT120I	GGNCC	3 cut(s)	42, 58, 559
BmiI	GGNNCC	2 cut(s)	60, 870
BmrFI	CCNGG	3 cut(s)	873, 1020, 1147
BmsI	GCATC	3 cut(s)	203, 271, 852
BpmI	CTGGAG	1 cut(s)	903
Bpu1102I	GCTNAGC	1 cut(s)	990
BpuEI	CTTGAG	1 cut(s)	5
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	1019, 1145
Bse1I	ACTGG	5 cut(s)	189, 442, 561, 813, 1163
Bse3DI	GCAATG	2 cut(s)	27, 360
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	3 cut(s)	873, 1020, 1147
BseDI	CCNNGG	2 cut(s)	1019, 1145
BseGI	GGATG	2 cut(s)	562, 693
BseJI	GATNNNNATC	1 cut(s)	261
BseMI	GCAATG	2 cut(s)	27, 360
BseMII	CTCAG	3 cut(s)	642, 981, 1104
BseNI	ACTGG	5 cut(s)	189, 442, 561, 813, 1163
BseXI	GCAGC	3 cut(s)	163, 495, 1018
BsgI	GTGCAG	1 cut(s)	737
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	3 cut(s)	218, 354, 464
BshNI	GGYRCC	1 cut(s)	868
BsiHKAI	GWGCWC	1 cut(s)	919
BsiHKCI	CYCGRG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	647
BsnI	GGCC	3 cut(s)	218, 354, 464
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	919
Bsp1407I	TGTACA	1 cut(s)	723
Bsp143I	GATC	5 cut(s)	86, 97, 241, 543, 1036
Bsp1720I	GCTNAGC	1 cut(s)	990
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	3 cut(s)	218, 354, 464
BspCNI	CTCAG	3 cut(s)	643, 982, 1105
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	2 cut(s)	60, 870
BspMAI	CTGCAG	1 cut(s)	513
BspQI	GCTCTTC	1 cut(s)	127
BspT107I	GGYRCC	1 cut(s)	868
BsrDI	GCAATG	2 cut(s)	27, 360
BsrGI	TGTACA	1 cut(s)	723
BsrI	ACTGG	5 cut(s)	189, 442, 561, 813, 1163
BssECI	CCNNGG	2 cut(s)	1019, 1145
BssMI	GATC	5 cut(s)	86, 97, 241, 543, 1036
Bst2UI	CCWGG	3 cut(s)	873, 1020, 1147
Bst4CI	ACNGT	5 cut(s)	124, 238, 373, 658, 1014
Bst6I	CTCTTC	1 cut(s)	127
BstAUI	TGTACA	1 cut(s)	723
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	4 cut(s)	207, 651, 990, 1113
BstF5I	GGATG	2 cut(s)	562, 693
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	3 cut(s)	426, 552, 857
BstKTI	GATC	5 cut(s)	89, 100, 244, 546, 1039
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	5 cut(s)	86, 97, 241, 543, 1036
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstNI	CCWGG	3 cut(s)	873, 1020, 1147
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	3 cut(s)	871, 1018, 1145
BstSFI	CTRYAG	3 cut(s)	372, 509, 939
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	163, 495, 1018
BstXI	CCANNNNNNTGG	2 cut(s)	472, 770
BsuRI	GGCC	3 cut(s)	218, 354, 464
BtrI	CACGTC	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	562, 693
BtsIMutI	CAGTG	6 cut(s)	138, 196, 435, 554, 1010, 1110
Cac8I	GCNNGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	1012
CfoI	GCGC	3 cut(s)	426, 552, 857
Cfr13I	GGNCC	3 cut(s)	42, 58, 559
CseI	GACGC	2 cut(s)	21, 494
Csp6I	GTAC	2 cut(s)	622, 724
CviAII	CATG	5 cut(s)	299, 547, 698, 764, 1096
CviQI	GTAC	2 cut(s)	622, 724
DdeI	CTNAG	4 cut(s)	207, 651, 990, 1113
DpnI	GATC	5 cut(s)	88, 99, 243, 545, 1038
DpnII	GATC	5 cut(s)	86, 97, 241, 543, 1036
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Ecl136II	GAGCTC	1 cut(s)	917
Eco24I	GRGCYC	1 cut(s)	919
Eco47I	GGWCC	3 cut(s)	42, 58, 559
Eco53kI	GAGCTC	1 cut(s)	917
Eco57I	CTGAAG	2 cut(s)	183, 524
Eco88I	CYCGRG	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	917
EcoRII	CCWGG	3 cut(s)	871, 1018, 1145
EcoT22I	ATGCAT	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	919
FaeI	CATG	5 cut(s)	302, 550, 701, 767, 1099
FatI	CATG	5 cut(s)	298, 546, 697, 763, 1095
FbaI	TGATCA	3 cut(s)	97, 241, 1036
Fnu4HI	GCNGC	3 cut(s)	177, 509, 1007
FokI	GGATG	2 cut(s)	549, 700
FriOI	GRGCYC	1 cut(s)	919
Fsp4HI	GCNGC	3 cut(s)	177, 509, 1007
GlaI	GCGC	3 cut(s)	425, 551, 856
GluI	GCNGC	3 cut(s)	177, 509, 1007
GsuI	CTGGAG	1 cut(s)	903
HaeIII	GGCC	3 cut(s)	218, 354, 464
HgaI	GACGC	2 cut(s)	21, 494
HhaI	GCGC	3 cut(s)	426, 552, 857
Hin1II	CATG	5 cut(s)	302, 550, 701, 767, 1099
Hin6I	GCGC	3 cut(s)	424, 550, 855
HinP1I	GCGC	3 cut(s)	424, 550, 855
HinfI	GANTC	5 cut(s)	71, 170, 450, 1060, 1099
HphI	GGTGA	5 cut(s)	80, 301, 494, 887, 1133
Hpy166II	GTNNAC	3 cut(s)	292, 661, 726
Hpy188I	TCNGA	5 cut(s)	42, 58, 252, 543, 652
Hpy188III	TCNNGA	6 cut(s)	22, 473, 685, 785, 903, 920
Hpy8I	GTNNAC	3 cut(s)	292, 661, 726
Hpy99I	CGWCG	3 cut(s)	37, 58, 370
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	5 cut(s)	124, 238, 373, 658, 1014
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	8 cut(s)	179, 194, 262, 494, 511, 718, 760, 1095
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	4 cut(s)	207, 651, 990, 1113
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	5 cut(s)	302, 550, 701, 767, 1099
HspAI	GCGC	3 cut(s)	424, 550, 855
Ksp22I	TGATCA	3 cut(s)	97, 241, 1036
Kzo9I	GATC	5 cut(s)	86, 97, 241, 543, 1036
LguI	GCTCTTC	1 cut(s)	127
LmnI	GCTCC	3 cut(s)	852, 922, 935
Lsp1109I	GCAGC	3 cut(s)	163, 495, 1018
LweI	GCATC	3 cut(s)	203, 271, 852
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	118, 482
MalI	GATC	5 cut(s)	88, 99, 243, 545, 1038
MboI	GATC	5 cut(s)	86, 97, 241, 543, 1036
MboII	GAAGA	5 cut(s)	144, 189, 329, 989, 1094
MfeI	CAATTG	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	919
MluCI	AATT	5 cut(s)	578, 751, 802, 1131, 1167
MlyI	GAGTC	1 cut(s)	459
MmeI	TCCRAC	2 cut(s)	20, 36
MnlI	CCTC	2 cut(s)	55, 1137
Mph1103I	ATGCAT	1 cut(s)	264
MseI	TTAA	5 cut(s)	627, 749, 792, 1134, 1171
MslI	CAYNNNNRTG	2 cut(s)	567, 962
MspA1I	CMGCKG	2 cut(s)	176, 1042
MspR9I	CCNGG	3 cut(s)	873, 1020, 1147
MunI	CAATTG	1 cut(s)	578
MvaI	CCWGG	3 cut(s)	873, 1020, 1147
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	432
NdeII	GATC	5 cut(s)	86, 97, 241, 543, 1036
NlaIII	CATG	5 cut(s)	302, 550, 701, 767, 1099
NlaIV	GGNNCC	2 cut(s)	60, 870
NmuCI	GTSAC	1 cut(s)	482
NsiI	ATGCAT	1 cut(s)	264
NspI	RCATGY	1 cut(s)	701
PciI	ACATGT	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	59
PfeI	GAWTC	4 cut(s)	71, 170, 1060, 1099
PkrI	GCNGC	3 cut(s)	178, 510, 1008
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
PscI	ACATGT	1 cut(s)	697
Psp124BI	GAGCTC	1 cut(s)	919
Psp6I	CCWGG	3 cut(s)	871, 1018, 1145
PspGI	CCWGG	3 cut(s)	871, 1018, 1145
PspN4I	GGNNCC	2 cut(s)	60, 870
PspPI	GGNCC	3 cut(s)	42, 58, 559
PstI	CTGCAG	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	1012
PvuII	CAGCTG	2 cut(s)	176, 1042
RsaI	GTAC	2 cut(s)	623, 725
RsaNI	GTAC	2 cut(s)	622, 724
RseI	CAYNNNNRTG	2 cut(s)	567, 962
SacI	GAGCTC	1 cut(s)	919
SapI	GCTCTTC	1 cut(s)	127
SaqAI	TTAA	5 cut(s)	627, 749, 792, 1134, 1171
SatI	GCNGC	3 cut(s)	177, 509, 1007
Sau3AI	GATC	5 cut(s)	86, 97, 241, 543, 1036
Sau96I	GGNCC	3 cut(s)	42, 58, 559
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	3 cut(s)	873, 1020, 1147
SduI	GDGCHC	1 cut(s)	919
SfaNI	GCATC	3 cut(s)	203, 271, 852
SfcI	CTRYAG	3 cut(s)	372, 509, 939
SinI	GGWCC	3 cut(s)	42, 58, 559
SmiMI	CAYNNNNRTG	2 cut(s)	567, 962
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	5 cut(s)	578, 751, 802, 1131, 1167
SsiI	CCGC	1 cut(s)	378
SspI	AATATT	1 cut(s)	274
SstI	GAGCTC	1 cut(s)	919
StyD4I	CCNGG	3 cut(s)	871, 1018, 1145
TaaI	ACNGT	5 cut(s)	124, 238, 373, 658, 1014
TaiI	ACGT	1 cut(s)	188
TasI	AATT	5 cut(s)	578, 751, 802, 1131, 1167
TatI	WGTACW	1 cut(s)	723
TfiI	GAWTC	4 cut(s)	71, 170, 1060, 1099
Tru1I	TTAA	5 cut(s)	627, 749, 792, 1134, 1171
Tru9I	TTAA	5 cut(s)	627, 749, 792, 1134, 1171
TscAI	CASTG	6 cut(s)	145, 196, 442, 561, 1017, 1117
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	3 cut(s)	176, 508, 1006
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	5 cut(s)	17, 284, 432, 704, 1112
TspRI	CASTG	6 cut(s)	145, 196, 442, 561, 1017, 1117
VpaK11BI	GGWCC	3 cut(s)	42, 58, 559
XapI	RAATTY	1 cut(s)	802
XceI	RCATGY	1 cut(s)	701
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.