Rroxscaffold_4G00302480
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
22843216 .. 22848296
5081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302480.1

Sequence Viewer

Length: 1404 bp
ATGAATATGATGCGTAGGCTCAAGAGCATTGCGTCGGGTCGGACCTCTGTTTCGTCGGACCCGAGTGGTGATTCCAGCTCAAAGAGATCAAAGTTTGATCAACAAACTGAAAAGAAGGTTACTGTTGAGAGAAGAGCCACCGACCAGATTACAAAATCAACATCAATGGAATCAGCTGCAAGCACGTCCACTGCATCTTCAGTAGCTAAGATACAAGCCAAAGAAGAAAAATCTACTATTGATCAACTTCCGAAAGATATGCATCAAATGAATATTAGAGATGATAAGGTGAACAACCATGTTGAAAAGGATATGGAAGAAACTATCATAAATGGTAATGGAACAGAAACAGGCCATATCATTGCGACGACAGTAGGCGGTCGAAATGGACAACCTAAGCAGACAATCTCTTATATGGCAGAGCGCGTAGTTGGCACTGGTTCATTTGGAGTCGTCTTTCAGGCCAAGTGTCTGGAAACAGGTGATGCAGTTGCAATAAAAAAGGTGCTGCAGGATAAAAGATATAAAAATAGAGAACTTCAGATCATGCGCTCACTGGACCATCCCAATGTTGTTCAATTGAAGCATTGTTTCTTTTCAACTACCGAAAAGGACGAGCTGTACCTTAACCTTGTCCTTGAATATATATCTGAGACTGTTTACAGAGTGTCAAAGCATTATGTCAGGATGAACCAACATGTTCCCATTATTTATGCGCAGTTGTACACATACCAGATTTGTCGGGCATTAAATTACTTGCACCATGTTGTTGGTGTGTGTCATCGTGATATTAAGCCACAGAATTTACTGGTCAATCCCCACACTCATCAGCTAAAGATATGTGATTTTGGGAGCGCAAAGATGCTGGTGCCAGGTGAAGCCAACATATCATATATTTGCTCACGATATTATAGAGCTCCAGAACTCATATTTGGAGCTACAGAATATACAACTGCCATTGATATGTGGTCTGTTGGTTGTGTATTTGCTGAGCTTCTTCTTGGGCAGCCACTGTTTCCTGGGGAGAGTGGTGTTGATCAGCTGGTGGAAATCATAAAGATTCTTGGAACACCAACCAGAGAAGAAATCAAGTGCATGAATCCAAACTACACTGAGTTCAAGTTTCCTCAAATTAAAGCTCACCCCTGGCATAAGATATTCCATAAGCGAATGCCCTCTGAAGCTGTGGATCTCATATCAAGGCTGCTCCAGTATTCACCAAATCTGCGTTGTACTGCTTTAGAGGCTTGTGCACACCCTTTCTTTGATGATTTGAGAGACCCAAATGTTAGCTTGCCTAATGGACGGGCAGTACCTCCTTTGTTCGATTTTACAGCTCAAGAATTGGCCGGTGCATCCACTGAACTCCGACATCGTCTCATCCCTGAGCATGCAAGGACTTAA

Protein Analysis

467

Amino Acids

52.78

Weight (kDa)

8.53

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 139 - 422 1.5e-63 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 141 - 340 2e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 717
AccB1I GGYRCC 1 cut(s) 868
AccII CGCG 1 cut(s) 426
AciI CCGC 1 cut(s) 378
AclWI GGATC 1 cut(s) 1197
AcoI YGGCCR 1 cut(s) 1347
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 3 cut(s) 183, 524, 1200
AfaI GTAC 4 cut(s) 623, 725, 1234, 1314
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 6 cut(s) 305, 578, 583, 600, 641, 1120
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 3 cut(s) 871, 1018, 1145
AjuI GAANNNNNNNTTGG 2 cut(s) 915, 947
Alw21I GWGCWC 2 cut(s) 919, 1255
Alw26I GTCTC 3 cut(s) 647, 1272, 1382
Alw44I GTGCAC 1 cut(s) 1251
AlwI GGATC 1 cut(s) 1197
AlwNI CAGNNNCTG 1 cut(s) 1012
Ama87I CYCGRG 1 cut(s) 61
AoxI GGCC 3 cut(s) 352, 462, 1347
ApaLI GTGCAC 1 cut(s) 1251
ApeKI GCWGC 4 cut(s) 176, 508, 1006, 1204
ApoI RAATTY 1 cut(s) 802
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AspLEI GCGC 4 cut(s) 426, 552, 718, 857
AspS9I GGNCC 3 cut(s) 42, 58, 559
AsuHPI GGTGA 6 cut(s) 80, 301, 494, 887, 1133, 1209
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 3 cut(s) 42, 58, 559
BaeGI GKGCMC 1 cut(s) 1255
BanI GGYRCC 1 cut(s) 868
BanII GRGCYC 1 cut(s) 919
Bbv12I GWGCWC 2 cut(s) 919, 1255
BbvI GCAGC 4 cut(s) 163, 495, 1018, 1191
BccI CCATC 1 cut(s) 570
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 3 cut(s) 873, 1020, 1147
BclI TGATCA 3 cut(s) 97, 241, 1036
BcoDI GTCTC 3 cut(s) 647, 1272, 1382
BfmI CTRYAG 2 cut(s) 509, 939
BisI GCNGC 4 cut(s) 177, 509, 1007, 1205
BlpI GCTNAGC 1 cut(s) 990
BlsI GCNGC 4 cut(s) 178, 510, 1008, 1206
Bme1390I CCNGG 3 cut(s) 873, 1020, 1147
Bme18I GGWCC 3 cut(s) 42, 58, 559
BmeT110I CYCGRG 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 186
BmgT120I GGNCC 3 cut(s) 42, 58, 559
BmiI GGNNCC 2 cut(s) 60, 870
BmrFI CCNGG 3 cut(s) 873, 1020, 1147
BmsI GCATC 5 cut(s) 203, 271, 475, 852, 1364
BpmI CTGGAG 2 cut(s) 903, 1193
Bpu10I CCTNAGC 2 cut(s) 396, 1386
Bpu1102I GCTNAGC 1 cut(s) 990
BpuEI CTTGAG 2 cut(s) 5, 1323
BsaBI GATNNNNATC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 1272
BsaJI CCNNGG 2 cut(s) 1019, 1145
Bse118I RCCGGY 1 cut(s) 1349
Bse1I ACTGG 4 cut(s) 442, 561, 813, 1210
Bse3DI GCAATG 2 cut(s) 27, 360
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 3 cut(s) 873, 1020, 1147
BseDI CCNNGG 2 cut(s) 1019, 1145
BseGI GGATG 4 cut(s) 562, 693, 1355, 1380
BseJI GATNNNNATC 1 cut(s) 261
BseMI GCAATG 2 cut(s) 27, 360
BseMII CTCAG 4 cut(s) 642, 981, 1104, 1377
BseNI ACTGG 4 cut(s) 442, 561, 813, 1210
BseSI GKGCMC 1 cut(s) 1255
BseXI GCAGC 4 cut(s) 163, 495, 1018, 1191
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 3 cut(s) 354, 464, 1349
BshNI GGYRCC 1 cut(s) 868
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 2 cut(s) 919, 1255
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 1 cut(s) 1350
BsmAI GTCTC 3 cut(s) 647, 1272, 1382
BsmBI CGTCTC 1 cut(s) 1382
BsmI GAATGC 1 cut(s) 1176
BsnI GGCC 3 cut(s) 354, 464, 1349
Bso31I GGTCTC 1 cut(s) 1272
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 919, 1255
Bsp1407I TGTACA 1 cut(s) 723
Bsp143I GATC 6 cut(s) 86, 97, 241, 543, 1036, 1189
Bsp1720I GCTNAGC 1 cut(s) 990
BspACI CCGC 1 cut(s) 378
BspANI GGCC 3 cut(s) 354, 464, 1349
BspCNI CTCAG 4 cut(s) 643, 982, 1105, 1378
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 60, 870
BspMAI CTGCAG 1 cut(s) 513
BspPI GGATC 1 cut(s) 1197
BspQI GCTCTTC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 868
BspTNI GGTCTC 1 cut(s) 1272
BsrDI GCAATG 2 cut(s) 27, 360
BsrFI RCCGGY 1 cut(s) 1349
BsrGI TGTACA 1 cut(s) 723
BsrI ACTGG 4 cut(s) 442, 561, 813, 1210
BssAI RCCGGY 1 cut(s) 1349
BssECI CCNNGG 2 cut(s) 1019, 1145
BssMI GATC 6 cut(s) 86, 97, 241, 543, 1036, 1189
Bst2UI CCWGG 3 cut(s) 873, 1020, 1147
Bst4CI ACNGT 4 cut(s) 124, 373, 658, 1014
Bst6I CTCTTC 1 cut(s) 127
BstAUI TGTACA 1 cut(s) 723
BstC8I GCNNGC 3 cut(s) 181, 1295, 1392
BstDEI CTNAG 6 cut(s) 207, 396, 651, 990, 1113, 1386
BstF5I GGATG 4 cut(s) 562, 693, 1355, 1380
BstFNI CGCG 1 cut(s) 426
BstHHI GCGC 4 cut(s) 426, 552, 718, 857
BstKTI GATC 6 cut(s) 89, 100, 244, 546, 1039, 1192
BstMAI GTCTC 3 cut(s) 647, 1272, 1382
BstMBI GATC 6 cut(s) 86, 97, 241, 543, 1036, 1189
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 2 cut(s) 432, 1244
BstNI CCWGG 3 cut(s) 873, 1020, 1147
BstNSI RCATGY 2 cut(s) 701, 1394
BstSCI CCNGG 3 cut(s) 871, 1018, 1145
BstSFI CTRYAG 2 cut(s) 509, 939
BstSLI GKGCMC 1 cut(s) 1255
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 4 cut(s) 163, 495, 1018, 1191
BstX2I RGATCY 1 cut(s) 1189
BstXI CCANNNNNNTGG 2 cut(s) 472, 770
BstYI RGATCY 1 cut(s) 1189
BsuRI GGCC 3 cut(s) 354, 464, 1349
BtrI CACGTC 1 cut(s) 186
BtsCI GGATG 4 cut(s) 562, 693, 1355, 1380
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 6 cut(s) 189, 435, 554, 1010, 1110, 1359
Cac8I GCNNGC 3 cut(s) 181, 1295, 1392
CaiI CAGNNNCTG 1 cut(s) 1012
CfoI GCGC 4 cut(s) 426, 552, 718, 857
Cfr10I RCCGGY 1 cut(s) 1349
Cfr13I GGNCC 3 cut(s) 42, 58, 559
CseI GACGC 1 cut(s) 21
Csp6I GTAC 4 cut(s) 622, 724, 1233, 1313
CviAII CATG 6 cut(s) 299, 547, 698, 764, 1096, 1391
CviQI GTAC 4 cut(s) 622, 724, 1233, 1313
DdeI CTNAG 6 cut(s) 207, 396, 651, 990, 1113, 1386
DpnI GATC 6 cut(s) 88, 99, 243, 545, 1038, 1191
DpnII GATC 6 cut(s) 86, 97, 241, 543, 1036, 1189
EaeI YGGCCR 1 cut(s) 1347
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 917
Eco24I GRGCYC 1 cut(s) 919
Eco31I GGTCTC 1 cut(s) 1272
Eco47I GGWCC 3 cut(s) 42, 58, 559
Eco53kI GAGCTC 1 cut(s) 917
Eco57I CTGAAG 3 cut(s) 183, 524, 1200
Eco88I CYCGRG 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 917
EcoRII CCWGG 3 cut(s) 871, 1018, 1145
EcoT22I ATGCAT 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 919
Esp3I CGTCTC 1 cut(s) 1382
FaeI CATG 6 cut(s) 302, 550, 701, 767, 1099, 1394
FatI CATG 6 cut(s) 298, 546, 697, 763, 1095, 1390
FbaI TGATCA 3 cut(s) 97, 241, 1036
Fnu4HI GCNGC 4 cut(s) 177, 509, 1007, 1205
FokI GGATG 4 cut(s) 549, 700, 1342, 1367
FriOI GRGCYC 1 cut(s) 919
Fsp4HI GCNGC 4 cut(s) 177, 509, 1007, 1205
FspI TGCGCA 1 cut(s) 717
GlaI GCGC 4 cut(s) 425, 551, 717, 856
GluI GCNGC 4 cut(s) 177, 509, 1007, 1205
GsuI CTGGAG 2 cut(s) 903, 1193
HaeIII GGCC 3 cut(s) 354, 464, 1349
HapII CCGG 1 cut(s) 1350
HgaI GACGC 1 cut(s) 21
HhaI GCGC 4 cut(s) 426, 552, 718, 857
Hin1II CATG 6 cut(s) 302, 550, 701, 767, 1099, 1394
Hin6I GCGC 4 cut(s) 424, 550, 716, 855
HinP1I GCGC 4 cut(s) 424, 550, 716, 855
HinfI GANTC 5 cut(s) 71, 170, 450, 1060, 1099
HpaII CCGG 1 cut(s) 1350
HphI GGTGA 6 cut(s) 80, 301, 494, 887, 1133, 1209
Hpy166II GTNNAC 5 cut(s) 189, 292, 661, 726, 1253
Hpy188I TCNGA 7 cut(s) 42, 58, 252, 543, 652, 1180, 1370
Hpy188III TCNNGA 7 cut(s) 22, 473, 685, 785, 903, 920, 1340
Hpy8I GTNNAC 5 cut(s) 189, 292, 661, 726, 1253
Hpy99I CGWCG 3 cut(s) 37, 58, 370
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 4 cut(s) 124, 373, 658, 1014
HpyCH4IV ACGT 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 432, 1244
HpyF3I CTNAG 6 cut(s) 207, 396, 651, 990, 1113, 1386
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 6 cut(s) 302, 550, 701, 767, 1099, 1394
HspAI GCGC 4 cut(s) 424, 550, 716, 855
Ksp22I TGATCA 3 cut(s) 97, 241, 1036
Kzo9I GATC 6 cut(s) 86, 97, 241, 543, 1036, 1189
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 4 cut(s) 852, 922, 935, 1212
Lsp1109I GCAGC 4 cut(s) 163, 495, 1018, 1191
LweI GCATC 5 cut(s) 203, 271, 475, 852, 1364
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 118
MalI GATC 6 cut(s) 88, 99, 243, 545, 1038, 1191
MboI GATC 6 cut(s) 86, 97, 241, 543, 1036, 1189
MboII GAAGA 6 cut(s) 144, 189, 236, 329, 989, 1094
MfeI CAATTG 1 cut(s) 578
MflI RGATCY 1 cut(s) 1189
MhlI GDGCHC 2 cut(s) 919, 1255
MluCI AATT 5 cut(s) 578, 751, 802, 1131, 1343
MlyI GAGTC 1 cut(s) 459
MmeI TCCRAC 3 cut(s) 20, 36, 1393
MnlI CCTC 5 cut(s) 55, 1137, 1186, 1237, 1326
Mph1103I ATGCAT 1 cut(s) 264
MseI TTAA 5 cut(s) 627, 749, 792, 1134, 1402
MslI CAYNNNNRTG 2 cut(s) 567, 962
MspA1I CMGCKG 2 cut(s) 176, 1042
MspI CCGG 1 cut(s) 1350
MspR9I CCNGG 3 cut(s) 873, 1020, 1147
MunI CAATTG 1 cut(s) 578
Mva1269I GAATGC 1 cut(s) 1176
MvaI CCWGG 3 cut(s) 873, 1020, 1147
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 432, 1244
NdeII GATC 6 cut(s) 86, 97, 241, 543, 1036, 1189
NlaIII CATG 6 cut(s) 302, 550, 701, 767, 1099, 1394
NlaIV GGNNCC 2 cut(s) 60, 870
NsbI TGCGCA 1 cut(s) 717
NsiI ATGCAT 1 cut(s) 264
NspI RCATGY 2 cut(s) 701, 1394
PaeI GCATGC 1 cut(s) 1394
PciI ACATGT 1 cut(s) 697
PciSI GCTCTTC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PctI GAATGC 1 cut(s) 1176
PfeI GAWTC 4 cut(s) 71, 170, 1060, 1099
PflFI GACNNNGTC 1 cut(s) 1374
PkrI GCNGC 4 cut(s) 178, 510, 1008, 1206
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
PscI ACATGT 1 cut(s) 697
Psp124BI GAGCTC 1 cut(s) 919
Psp6I CCWGG 3 cut(s) 871, 1018, 1145
PspGI CCWGG 3 cut(s) 871, 1018, 1145
PspN4I GGNNCC 2 cut(s) 60, 870
PspPI GGNCC 3 cut(s) 42, 58, 559
PstI CTGCAG 1 cut(s) 513
PstNI CAGNNNCTG 1 cut(s) 1012
PsuI RGATCY 1 cut(s) 1189
PsyI GACNNNGTC 1 cut(s) 1374
PvuII CAGCTG 2 cut(s) 176, 1042
RsaI GTAC 4 cut(s) 623, 725, 1234, 1314
RsaNI GTAC 4 cut(s) 622, 724, 1233, 1313
RseI CAYNNNNRTG 2 cut(s) 567, 962
SacI GAGCTC 1 cut(s) 919
SapI GCTCTTC 1 cut(s) 127
SaqAI TTAA 5 cut(s) 627, 749, 792, 1134, 1402
SatI GCNGC 4 cut(s) 177, 509, 1007, 1205
Sau3AI GATC 6 cut(s) 86, 97, 241, 543, 1036, 1189
Sau96I GGNCC 3 cut(s) 42, 58, 559
SchI GAGTC 1 cut(s) 459
ScrFI CCNGG 3 cut(s) 873, 1020, 1147
SduI GDGCHC 2 cut(s) 919, 1255
SfaNI GCATC 5 cut(s) 203, 271, 475, 852, 1364
SfcI CTRYAG 2 cut(s) 509, 939
SinI GGWCC 3 cut(s) 42, 58, 559
SmiMI CAYNNNNRTG 2 cut(s) 567, 962
SmlI CTYRAG 2 cut(s) 20, 1338
SmoI CTYRAG 2 cut(s) 20, 1338
SphI GCATGC 1 cut(s) 1394
Sse9I AATT 5 cut(s) 578, 751, 802, 1131, 1343
SsiI CCGC 1 cut(s) 378
SspI AATATT 1 cut(s) 274
SstI GAGCTC 1 cut(s) 919
StyD4I CCNGG 3 cut(s) 871, 1018, 1145
TaaI ACNGT 4 cut(s) 124, 373, 658, 1014
TaiI ACGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 382, 1326
TasI AATT 5 cut(s) 578, 751, 802, 1131, 1343
TatI WGTACW 2 cut(s) 723, 1232
TfiI GAWTC 4 cut(s) 71, 170, 1060, 1099
Tru1I TTAA 5 cut(s) 627, 749, 792, 1134, 1402
Tru9I TTAA 5 cut(s) 627, 749, 792, 1134, 1402
TscAI CASTG 6 cut(s) 196, 442, 561, 1017, 1117, 1366
TseI GCWGC 4 cut(s) 176, 508, 1006, 1204
TspDTI ATGAA 5 cut(s) 17, 284, 432, 704, 1112
TspRI CASTG 6 cut(s) 196, 442, 561, 1017, 1117, 1366
Tth111I GACNNNGTC 1 cut(s) 1374
VneI GTGCAC 1 cut(s) 1251
VpaK11BI GGWCC 3 cut(s) 42, 58, 559
XapI RAATTY 1 cut(s) 802
XceI RCATGY 2 cut(s) 701, 1394
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.