Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008920

Physical Location & Seq

Genomic Coordinates Reverse (-)

33292308 .. 33294118

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0231000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGAGGAGGAGCCATGCATATTGATTTTCCTATCATCCACATCAAACCCTCTTCTTCTAATACTACTGATAATAAAATTTTCAGTAATAATCTTAATTTTCCAGTTTCAAACAGTTATGTTGGAGCTGTTAAACCCTCTTGTTCTGCTTCACAGTGCTACTGTGGGAATGAAACTTGCAGGAAGAAATTAGAGCTTGTTTATGGAAAAGAAGAGAAAAGAGCAAGTGGGTCTTTGATTAGCAGCTCTGTTTTTGGGTCCGTTCCTTCCCAATTTGAAGTCCAAAGTGCAATTGCTGCACTTCTGAATTTTATGCTTGGGGTAAATTCATCTGAGTCAGACTTACAGTGGCTTCAGAAATTGTTGGATTCTTGTGTTACAAGAAAGTTACTGTCCTATGGACACAGAAAACTTTATGATGCTTTCCAGTTGCTGCAAGCAGATCCTTCTGTTCAGAGATTGGTGCTTTCCCTATCCTCTGATAAAGCCCTATGGGATGCTATTACCAACAACGAGTTGGTCAAGAAGCTCCAAGAGCCACCCGGTTCAGAACCGGACTTGGTTGCCTGCATTATCGAGTGGATTATGGAGATGACAAAAGCGAAAGTTATGGAACTCGTTGAGAAATTCCAATCACTGGTGAATGATGTATTTCTACCTCGACAGACTAAGGGGGAAAATCCAGAAGTCAAGAACAAGAACGAGTTTGAAGAAAAGCTTAGATCTTCACTGCTTCTCTCAATTGTGACCCTCTTGATTGTGGTTGTCGCTCGACTCCAAAGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

262

Amino Acids

29.09

Weight (kDa)

7.57

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61160 AT3G61160 AT3G61160 AT3G61160 AT3G61160 AT3G61160 AT4G00720
fragaria_vesca	FvH4_7g13360 FvH4_7g13360
malus_domestica	MD01G1050100.v1.1 MD07G1127000.v1.1
prunus_persica	Prupe.2G157000_v2.0.a1 Prupe.2G157000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0352681
rosa_laevigata	RLG00000028321
rosa_multiflora	Rmu_ssc0000439.1_g000001
rosa_roxburghii	Rroxscaffold_4G00302480
rosa_rugosa	Rorug01G0231000
rosa_samantha	Rh1AG244000 Rh1BG214700 Rh1CG228000 Rh1DG240800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	637
AclWI	GGATC	1 cut(s)	437
AcsI	RAATTY	4 cut(s)	78, 307, 325, 626
AcuI	CTGAAG	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	637
AgsI	TTSAA	3 cut(s)	111, 278, 710
AluBI	AGCT	5 cut(s)	128, 196, 246, 529, 718
AluI	AGCT	5 cut(s)	128, 196, 246, 529, 718
AlwI	GGATC	1 cut(s)	437
AlwNI	CAGNNNCTG	1 cut(s)	433
ApeKI	GCWGC	3 cut(s)	243, 296, 433
ApoI	RAATTY	4 cut(s)	78, 307, 325, 626
AspS9I	GGNCC	1 cut(s)	258
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	652
AvaII	GGWCC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	255, 283, 420
BcnI	CCSGG	1 cut(s)	543
BglII	AGATCT	1 cut(s)	722
BisI	GCNGC	3 cut(s)	244, 297, 434
BlsI	GCNGC	3 cut(s)	245, 298, 435
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	13, 259
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	409, 487
BpuMI	CCSGG	1 cut(s)	543
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse1I	ACTGG	3 cut(s)	104, 427, 642
BseGI	GGATG	2 cut(s)	36, 502
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	3 cut(s)	104, 427, 642
BseRI	GAGGAG	2 cut(s)	21, 24
BseXI	GCAGC	3 cut(s)	255, 283, 420
BsgI	GTGCAG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	543, 554
BslI	CCNNNNNNNGG	1 cut(s)	637
Bsp143I	GATC	2 cut(s)	442, 722
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	13, 259
BspPI	GGATC	1 cut(s)	437
BsrI	ACTGG	3 cut(s)	104, 427, 642
BssMI	GATC	2 cut(s)	442, 722
Bst4CI	ACNGT	5 cut(s)	116, 156, 164, 348, 393
Bst6I	CTCTTC	2 cut(s)	58, 207
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	438, 568
BstDEI	CTNAG	3 cut(s)	333, 669, 719
BstF5I	GGATG	2 cut(s)	36, 502
BstKTI	GATC	2 cut(s)	445, 725
BstMBI	GATC	2 cut(s)	442, 722
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 535
BstSCI	CCNGG	1 cut(s)	541
BstV1I	GCAGC	3 cut(s)	255, 283, 420
BstX2I	RGATCY	2 cut(s)	442, 722
BstYI	RGATCY	2 cut(s)	442, 722
BtsCI	GGATG	2 cut(s)	36, 502
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	4 cut(s)	161, 353, 635, 728
Cac8I	GCNNGC	2 cut(s)	438, 568
CaiI	CAGNNNCTG	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	258
CviAII	CATG	2 cut(s)	16, 786
CviJI	RGCY	9 cut(s)	14, 128, 196, 246, 352, 488, 529, 538, 718
CviKI_1	RGCY	9 cut(s)	14, 128, 196, 246, 352, 488, 529, 538, 718
DdeI	CTNAG	3 cut(s)	333, 669, 719
DpnI	GATC	2 cut(s)	444, 724
DpnII	GATC	2 cut(s)	442, 722
Eam1104I	CTCTTC	2 cut(s)	58, 207
EarI	CTCTTC	2 cut(s)	58, 207
Eco47I	GGWCC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	338
EcoT22I	ATGCAT	1 cut(s)	21
FaeI	CATG	2 cut(s)	19, 789
FalI	AAGNNNNNCTT	4 cut(s)	217, 249, 702, 734
FatI	CATG	2 cut(s)	15, 785
Fnu4HI	GCNGC	3 cut(s)	244, 297, 434
FokI	GGATG	2 cut(s)	23, 509
Fsp4HI	GCNGC	3 cut(s)	244, 297, 434
GluI	GCNGC	3 cut(s)	244, 297, 434
HapII	CCGG	2 cut(s)	543, 554
Hin1II	CATG	2 cut(s)	19, 789
HindIII	AAGCTT	1 cut(s)	716
HinfI	GANTC	3 cut(s)	335, 368, 774
HpaII	CCGG	2 cut(s)	543, 554
HphI	GGTGA	1 cut(s)	652
Hpy188I	TCNGA	7 cut(s)	306, 334, 340, 357, 456, 481, 550
Hpy188III	TCNNGA	4 cut(s)	523, 683, 691, 754
HpyAV	CCTTC	2 cut(s)	276, 456
HpyCH4III	ACNGT	5 cut(s)	116, 156, 164, 348, 393
HpyCH4V	TGCA	6 cut(s)	19, 180, 290, 299, 436, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 535
HpyF3I	CTNAG	3 cut(s)	333, 669, 719
Hsp92II	CATG	2 cut(s)	19, 789
Kzo9I	GATC	2 cut(s)	442, 722
LmnI	GCTCC	3 cut(s)	11, 125, 534
LpnPI	CCDG	8 cut(s)	117, 166, 440, 556, 567, 580, 623, 696
Lsp1109I	GCAGC	3 cut(s)	255, 283, 420
LweI	GCATC	2 cut(s)	409, 487
MaeIII	GTNAC	3 cut(s)	376, 387, 745
MalI	GATC	2 cut(s)	444, 724
MboI	GATC	2 cut(s)	442, 722
MboII	GAAGA	6 cut(s)	45, 48, 196, 224, 717, 722
MfeI	CAATTG	2 cut(s)	291, 741
MflI	RGATCY	2 cut(s)	442, 722
MlyI	GAGTC	2 cut(s)	344, 768
MmeI	TCCRAC	2 cut(s)	103, 345
MnlI	CCTC	5 cut(s)	61, 148, 487, 669, 761
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	2 cut(s)	96, 132
MspI	CCGG	2 cut(s)	543, 554
MspR9I	CCNGG	1 cut(s)	543
MunI	CAATTG	2 cut(s)	291, 741
MwoI	GCNNNNNNNGC	2 cut(s)	296, 535
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	2 cut(s)	442, 722
NlaIII	CATG	2 cut(s)	19, 789
NlaIV	GGNNCC	2 cut(s)	13, 259
NmuCI	GTSAC	1 cut(s)	745
NsiI	ATGCAT	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	637
PkrI	GCNGC	3 cut(s)	245, 298, 435
PleI	GAGTC	2 cut(s)	343, 768
PpsI	GAGTC	2 cut(s)	343, 768
PspN4I	GGNNCC	2 cut(s)	13, 259
PspPI	GGNCC	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	2 cut(s)	442, 722
SaqAI	TTAA	2 cut(s)	96, 132
SatI	GCNGC	3 cut(s)	244, 297, 434
Sau3AI	GATC	2 cut(s)	442, 722
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	2 cut(s)	344, 768
ScrFI	CCNGG	1 cut(s)	543
SetI	ASST	6 cut(s)	130, 198, 248, 531, 661, 720
SfaNI	GCATC	2 cut(s)	409, 487
SinI	GGWCC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	541
TaaI	ACNGT	5 cut(s)	116, 156, 164, 348, 393
TaqI	TCGA	3 cut(s)	576, 661, 772
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	2 cut(s)	96, 132
Tru9I	TTAA	2 cut(s)	96, 132
TscAI	CASTG	4 cut(s)	161, 353, 642, 735
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	3 cut(s)	243, 296, 433
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	2 cut(s)	186, 318
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	4 cut(s)	161, 353, 642, 735
Van91I	CCANNNNNTGG	1 cut(s)	637
VpaK11BI	GGWCC	1 cut(s)	258
XapI	RAATTY	4 cut(s)	78, 307, 325, 626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.