Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008481

Physical Location & Seq

Genomic Coordinates Forward (+)

24437937 .. 24459994

Gene Structure 22058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1169800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3414 bp

ATGGGACTTTTTGATGGATTGCCCGTGTCTCCAGATAAGGCATATCTGAGGGAAGAGATTGCAAAGATCGATGAGAGCTGGGCTGCTGCTCGTTTTGATTCATTACCTCATGTTGTTCGTATTTTGACGTCCAAAGATCGTGAAGGTGAAGTCCAGTTTTTGAAGGAGCAAAGTGATGTTGTTGAGGAGGTTGTGGATGAAGTTGTGCATAATTATCACAGTGGCTTCAATAAAGCAATTCAAAATTATTCTCAGATCTTGCGGTTGTTCAGCGAATCTACTCAAAGTGTTGGTGTCCTGAAGGTTGATTTGGCTGAAGCAAAAAAGCGTCTCAGTGCCCGTAGTAAACAACTGCATCAATTATGGTACCGGTCAGTTACTTTGCGGCACATAATCTCCCTCTTAGATCAAATTGAGGGCATATCTAAGGTTCCAGCTCGGATAGAGAAGCTGATTGCCGAAAAGCAGTATTATGCTGCTGTTCAATTTCATGTTCAATCAATGTGGATGCTTGAAAGAGAGGGGCTTCAAACGGTCGGTGCCCTTCAAGATGTTCGCTCTGAGTTGACAAAGTTGCGAGGAGTTCTGTTTTATAAAGTGCTAGAGGATTTACATGCTCATCTTTACAACAAGGGTGAATATAGCTCAGCTGCTTTAAGTTTGCAAGAAATGGATGATGAGGTACCAACCACCACAGCTGCTGTATTTTCACTGAGTAATTCACAATCCCTGTCTCGAAGAACCAGGCTGTTAAAAGGTGACAATCAGTTCGGTAATCAAGGAGATGGATCATATAGGACAGGTTCTGTTGATGGAGGTTCATCTTTTGATGGCGTTGATGAGGAGGGCACTTCGGAACTGCATGATGAAGCTACCTCAGATGGGCATACTTCAGTGAGGATCAATGGTGATGTCAAAATTGTTCCTCGTGAGATGCCAACATGGCTTCAGTATTCCACTCCGGATGAATTTCTTGAAGCAATAAAGAAAAGTGATGCTCCACTTCATATCAAGTATTTGCAGACCATGGTTGAGTGCCTTTGCATGCTTAGAAAAGTTGCAGCTGCTGGTGCTATAATATGCCAAAGATTGCGACCTACAATTCATGAGATCATCACATCCAAGATTAAAGCTCATGCCGAGCTTCTTAATTCCTCAAGGTCTGGGATTGGGCAAGCTTCCCGAACTGCTACAGCTGGCCTACATTTTATGAAGGGACAGTTACAAAGTTATCAGTTGCCAAAACAGAAACGTCAGAATGGGATATCACTGTCTGGAACTCTATTGGCAGTAAGCCCTGTCTCACCTGTGATGGCTCCTGCAGGGAAAGCACAAGCTGCGGCAAAAGAACTTCTTGATTCAGTTTTGGATGCTGTTGTTCGGATATTTGGTAACCATGTTGTTGTTGGGGAGCTTTTGGAATCAAAGTCCTCTGTTGACATGAACACGCCAAAATCAATGCCAACAGATGTAAATCGGAATACTGATTTAGAAGCATCTCAAGTTACTGGAGGCTATAGCATTGGTTTTTCCTTGACAGTATTACAGAGTGAATGCCAACAACTTATTTGTGAGATTCTGCGGGCAACTCCTGAAGCTGCATCTGCTGATGCTGCTGTACAGACAGCTAGACTTGCAAACAAGGTCCCTTCCAAAGACAAGAGGGATGGTGCAGAAGAGGGTCTGACCTTTGCTTTTCGCTTCACAGATGCTACAATTTCTATTCCCAACCAAGGGGTTGATCTCATTCGTCAAGGCTGGAGTAGGAAAGGTCCAAACGTTTCACAAGAAGGTTATGGGTCTGCAGCTATCTTGCCTGAGCAAGGCATATATCTTGCAGCATCTGTATACCGGCCTGTTATTCAGTTTACAGATAAGGTTGCATCAATGCTTCCGAAAAAGTATTCCCAGTTAGGTAACGATGGATTGATGGCTTTTGTGGAGAACTTTGTGAAGGACCATTTTCTTCCCACGATGTTTGTGGACTACAGAAAAGGCGTACAGCAAGCTATATCAAGTCCAGCTGCATTCCGGCCCAGAGCACATGCTGCTGCATCTTATACTCCTTCAATTGAGAAGGGTCGACCTGTCTTACAGGGACTGTTGGCAATAGATTTTTTAGCAAAAGAGGTGCTTGGTTGGGCACAAGCTATGCCTAAATTTGCCGTTGACCTTGTGAAGTATGTGCAAACTTTCCTTGAGCGAACCTATGAACGATGCCGGACGGCATACATGGAGGCGGTTCTGGAGAAACAGAGCTATATGCTCATTGGAAGACATGATATCGAGCAGTTGATGCGTCTTGATCCAGCAAGTACCTGTTTACCAAATTCGTTTGGTCAGTCAAACTTCGAAACCCATTCTTCAGATTCTGAAAGTCTTGAGGTTGAATTACAATTAAGCGACTTATTATTGAATTTGCGGCCTATTAAGCAGGATAATCTAATTCGCGATGATAACAAACTAATATTGCTGGCTTCCCTTAGTGATTCATTGGAGTATGTTGCAGAGTCTATTGAAAGGCTGGGGCAGACAACCTTCAGATCTCCAAATCAAGTAGAAGAGAGTGGTAAGAACCGTCATCAACGAGCAACTAGTGATGCTTCTAGGGATCTGGCATCATTTGCAGATGAGTATAGAAAATTGGCAATTGACTGCCTCAAGGTTTTACGTGTTGAGATGCAATTGGAGACGATTTTCCATATGCAGGAAATGACAAATAGGGAATACATGGAAGACCAAGATGCAGAAGAACCAGATGACTTCATTATTTCACTTACTGCACAGATAACACGCAGGGATGAGGAAATGGCACCTTTCATTGCAGGAACGAAGCAAAACTATATATTTGGTGGGATTTGTAGCATCGCTGCAAATGCATCCATCAAGGCTTTGGCTGATATGAAATCAATCAACCTTTTTGGCGTTCAGCAGATATGTCGGAATACAATTGCGCTGGAACAGGCCCTGGCTGCTATCCCATCAATTAACAGCGAAGGTGTACAACAACGACTAGATCATGTCCGAACTTACTATGAACTCCTAAACATGCCATTCGAGGCAAGTCATTGGTATTGCATTTGCCTTGCTAGCTTTCATCACAGAGCACGAGCACTTGTTTACGACTACAGAGTATGCAAATCTTCTAAAGGTCCAGGTTCCAGGAAGGGAGATTCCTGCCGATGCTCTAGATCGTGTATCACAGATTTTACCCCGTTAGCCTTTTTCAGATTCATTCTATCTTTTCAAAGACTAAGAGTTATGTGCTGTGGAAAAGGTGGTAGCATCGACATAAAGTGTTGGTCATTCTCAAAATGGCGGATGCAGCGAAAGCAACACGAGCGAATTTTGTGGAAGTTGCCGGCCAACATGGCACACCATGTTGTGTCAAATTTTTTTTGCCGAACGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006887 GO:0006892 GO:0006893 GO:0006903 GO:0007154 GO:0007275 GO:0008037 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009791 GO:0009856 GO:0009875 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0022414 GO:0030054 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043230 GO:0044237 GO:0044249 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048316 GO:0048354 GO:0048359 GO:0048544 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0055044 GO:0060321 GO:0061458 GO:0070062 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec8_exocyst

Protein Analysis

1138

Amino Acids

127.12

Weight (kDa)

6.66

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec8_N	PF04048	16 - 151	2.8e-36	Exocyst complex component Sec8 N-terminal
Vps54_N	PF10475	22 - 203	1.2e-07	Vacuolar-sorting protein 54, of GARP complex
EXOC6_Sec15_N	PF20651	61 - 215	1.1e-07	Exocyst complex component EXOC6/Sec15, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10380 AT3G10380
fragaria_vesca	FvH4_7g18760 FvH4_7g18760
malus_domestica	MD01G1103100.v1.1 MD07G1169800.v1.1
prunus_persica	Prupe.2G208700_v2.0.a1 Prupe.2G208700_v2.0.a1
pyrus_communis	pycom01g12960 pycom07g16370
rosa_chinensis	RchiOBHm_Chr1g0362571
rosa_laevigata	RLG00000027638
rosa_multiflora	Rmu_sc0005725.1_g000007
rosa_roxburghii	Rroxscaffold_4G00293960
rosa_rugosa	Rorug01G0299600 Rorug01G0299600 Rorug01G0299600 Rorug01G0299700
rosa_samantha	Rh1AG308300 Rh1BG271600 Rh1CG289200 Rh1DG301900
rosa_wichuraiana	Rw1G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
AatII	GACGTC	1 cut(s)	131
Acc65I	GGTACC	2 cut(s)	366, 682
AccB1I	GGYRCC	4 cut(s)	366, 539, 682, 2812
AccI	GTMKAC	2 cut(s)	1848, 2083
AccII	CGCG	1 cut(s)	2451
AccIII	TCCGGA	1 cut(s)	961
AciI	CCGC	7 cut(s)	262, 385, 1340, 1582, 2240, 2422, 3319
AclI	AACGTT	1 cut(s)	1779
AclWI	GGATC	4 cut(s)	796, 908, 2300, 2619
AcoI	YGGCCR	1 cut(s)	3363
AcsI	RAATTY	6 cut(s)	968, 2159, 2329, 2416, 3345, 3391
AcuI	CTGAAG	7 cut(s)	320, 336, 876, 932, 1614, 2349, 2524
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	6 cut(s)	368, 684, 1620, 2001, 2317, 3003
AfiI	CCNNNNNNNGG	5 cut(s)	882, 1733, 1734, 1823, 2707
AflIII	ACRYGT	1 cut(s)	2671
AgeI	ACCGGT	1 cut(s)	369
AhlI	ACTAGT	1 cut(s)	2594
AjnI	CCWGG	4 cut(s)	743, 2967, 3154, 3161
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
Alw21I	GWGCWC	3 cut(s)	2044, 3109, 3115
Alw26I	GTCTC	5 cut(s)	33, 335, 738, 1306, 2684
AlwI	GGATC	4 cut(s)	796, 908, 2300, 2619
AlwNI	CAGNNNCTG	7 cut(s)	701, 806, 1067, 1844, 2101, 2372, 2968
Aor13HI	TCCGGA	1 cut(s)	961
AoxI	GGCC	6 cut(s)	1198, 1853, 2033, 2423, 2964, 3363
ApoI	RAATTY	6 cut(s)	968, 2159, 2329, 2416, 3345, 3391
ArsI	GACNNNNNNTTYG	2 cut(s)	752, 784
AsiGI	ACCGGT	1 cut(s)	369
Asp718I	GGTACC	2 cut(s)	366, 682
AspLEI	GCGC	1 cut(s)	2956
AspS9I	GGNCC	6 cut(s)	1645, 1772, 1957, 2034, 2965, 3152
AsuHPI	GGTGA	5 cut(s)	158, 647, 770, 920, 1296
AsuII	TTCGAA	1 cut(s)	2352
AsuNHI	GCTAGC	1 cut(s)	3089
AvaII	GGWCC	4 cut(s)	1645, 1772, 1957, 3152
BaeGI	GKGCMC	4 cut(s)	340, 544, 851, 2146
BanI	GGYRCC	4 cut(s)	366, 539, 682, 2812
BauI	CACGAG	3 cut(s)	927, 3108, 3338
BbsI	GAAGAC	2 cut(s)	2281, 2742
Bbv12I	GWGCWC	3 cut(s)	2044, 3109, 3115
BceAI	ACGGC	2 cut(s)	2150, 2241
BcgI	CGANNNNNNTGC	2 cut(s)	2921, 2955
BciT130I	CCWGG	4 cut(s)	745, 2969, 3156, 3163
BcoDI	GTCTC	5 cut(s)	33, 335, 738, 1306, 2684
BcuI	ACTAGT	1 cut(s)	2594
BfaI	CTAG	7 cut(s)	602, 1629, 2595, 2607, 3014, 3090, 3189
BfmI	CTRYAG	6 cut(s)	1191, 1320, 1516, 1803, 1987, 3127
BglI	GCCNNNNNGGC	2 cut(s)	943, 3371
BglII	AGATCT	2 cut(s)	255, 2543
BlpI	GCTNAGC	1 cut(s)	646
Bme1390I	CCNGG	4 cut(s)	745, 2969, 3156, 3163
Bme18I	GGWCC	4 cut(s)	1645, 1772, 1957, 3152
BmgT120I	GGNCC	6 cut(s)	1645, 1772, 1957, 2034, 2965, 3152
BmiI	GGNNCC	8 cut(s)	368, 432, 541, 684, 1317, 1647, 2814, 3160
BmrFI	CCNGG	4 cut(s)	745, 2969, 3156, 3163
BmrI	ACTGGG	1 cut(s)	1903
BmtI	GCTAGC	1 cut(s)	3093
BmuI	ACTGGG	1 cut(s)	1903
BpiI	GAAGAC	2 cut(s)	2281, 2742
BpmI	CTGGAG	4 cut(s)	15, 1530, 1780, 2267
Bpu10I	CCTNAGC	1 cut(s)	1818
Bpu1102I	GCTNAGC	1 cut(s)	646
Bpu14I	TTCGAA	1 cut(s)	2352
BpuEI	CTTGAG	5 cut(s)	1141, 1485, 2219, 2402, 2645
Bsa29I	ATCGAT	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	2672
BsaBI	GATNNNNATC	1 cut(s)	1473
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	1026, 1732, 2967
BsaWI	WCCGGW	2 cut(s)	369, 961
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	5 cut(s)	882, 1733, 1734, 1823, 2707
Bse118I	RCCGGY	3 cut(s)	369, 1851, 3361
Bse1I	ACTGG	3 cut(s)	154, 1513, 1909
Bse3DI	GCAATG	1 cut(s)	2820
Bse8I	GATNNNNATC	1 cut(s)	1473
BseAI	TCCGGA	1 cut(s)	961
BseBI	CCWGG	4 cut(s)	745, 2969, 3156, 3163
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	1026, 1732, 2967
BseJI	GATNNNNATC	1 cut(s)	1473
BseLI	CCNNNNNNNGG	5 cut(s)	882, 1733, 1734, 1823, 2707
BseMI	GCAATG	1 cut(s)	2820
BseMII	CTCAG	8 cut(s)	38, 266, 346, 552, 660, 704, 891, 1809
BseNI	ACTGG	3 cut(s)	154, 1513, 1909
BseRI	GAGGAG	3 cut(s)	200, 594, 857
BseSI	GKGCMC	4 cut(s)	340, 544, 851, 2146
BseYI	CCCAGC	2 cut(s)	78, 2524
BsgI	GTGCAG	2 cut(s)	1692, 2766
Bsh1236I	CGCG	1 cut(s)	2451
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	6 cut(s)	1200, 1855, 2035, 2425, 2966, 3365
BshNI	GGYRCC	4 cut(s)	366, 539, 682, 2812
BshTI	ACCGGT	1 cut(s)	369
BshVI	ATCGAT	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	537
BsiHKAI	GWGCWC	3 cut(s)	2044, 3109, 3115
BsiSI	CCGG	6 cut(s)	370, 962, 1852, 2032, 2221, 3362
BslFI	GGGAC	4 cut(s)	18, 1230, 1631, 2112
BslI	CCNNNNNNNGG	5 cut(s)	882, 1733, 1734, 1823, 2707
BsmAI	GTCTC	5 cut(s)	33, 335, 738, 1306, 2684
BsmBI	CGTCTC	2 cut(s)	335, 2684
BsmFI	GGGAC	4 cut(s)	18, 1230, 1631, 2112
BsmI	GAATGC	2 cut(s)	1559, 2027
BsnI	GGCC	6 cut(s)	1200, 1855, 2035, 2425, 2966, 3365
Bsp119I	TTCGAA	1 cut(s)	2352
Bsp1286I	GDGCHC	7 cut(s)	340, 544, 851, 2044, 2146, 3109, 3115
Bsp13I	TCCGGA	1 cut(s)	961
Bsp1407I	TGTACA	2 cut(s)	1618, 3001
Bsp1720I	GCTNAGC	1 cut(s)	646
Bsp19I	CCATGG	1 cut(s)	1026
Bsp68I	TCGCGA	1 cut(s)	2451
BspACI	CCGC	7 cut(s)	262, 385, 1340, 1582, 2240, 2422, 3319
BspANI	GGCC	6 cut(s)	1200, 1855, 2035, 2425, 2966, 3365
BspCNI	CTCAG	8 cut(s)	39, 265, 345, 553, 659, 705, 890, 1810
BspDI	ATCGAT	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	961
BspFNI	CGCG	1 cut(s)	2451
BspHI	TCATGA	1 cut(s)	1105
BspLI	GGNNCC	8 cut(s)	368, 432, 541, 684, 1317, 1647, 2814, 3160
BspMAI	CTGCAG	2 cut(s)	1324, 1807
BspOI	GCTAGC	1 cut(s)	3093
BspPI	GGATC	4 cut(s)	796, 908, 2300, 2619
BspT104I	TTCGAA	1 cut(s)	2352
BspT107I	GGYRCC	4 cut(s)	366, 539, 682, 2812
BsrDI	GCAATG	1 cut(s)	2820
BsrFI	RCCGGY	3 cut(s)	369, 1851, 3361
BsrGI	TGTACA	2 cut(s)	1618, 3001
BsrI	ACTGG	3 cut(s)	154, 1513, 1909
BssAI	RCCGGY	3 cut(s)	369, 1851, 3361
BssECI	CCNNGG	3 cut(s)	1026, 1732, 2967
BssNAI	GTATAC	1 cut(s)	1849
BssNI	GRCGYC	1 cut(s)	128
BssSI	CACGAG	3 cut(s)	927, 3108, 3338
BssT1I	CCWWGG	2 cut(s)	1026, 1732
Bst1107I	GTATAC	1 cut(s)	1849
Bst2BI	CACGAG	3 cut(s)	927, 3108, 3338
Bst2UI	CCWGG	4 cut(s)	745, 2969, 3156, 3163
Bst4CI	ACNGT	8 cut(s)	221, 535, 1221, 1272, 1540, 2103, 2579, 3409
Bst6I	CTCTTC	3 cut(s)	48, 1671, 2556
BstACI	GRCGYC	1 cut(s)	128
BstAPI	GCANNNNNTGC	4 cut(s)	1337, 2048, 2296, 2624
BstAUI	TGTACA	2 cut(s)	1618, 3001
BstBAI	YACGTR	1 cut(s)	2672
BstBI	TTCGAA	1 cut(s)	2352
BstC8I	GCNNGC	8 cut(s)	1046, 1176, 1198, 1584, 2007, 2475, 3091, 3363
BstDSI	CCRYGG	1 cut(s)	1026
BstEII	GGTNACC	1 cut(s)	1391
BstENI	CCTNNNNNAGG	1 cut(s)	1821
BstFNI	CGCG	1 cut(s)	2451
BstHHI	GCGC	1 cut(s)	2956
BstMAI	GTCTC	5 cut(s)	33, 335, 738, 1306, 2684
BstMCI	CGRYCG	1 cut(s)	537
BstNI	CCWGG	4 cut(s)	745, 2969, 3156, 3163
BstNSI	RCATGY	4 cut(s)	617, 1048, 2048, 3052
BstPI	GGTNACC	1 cut(s)	1391
BstSCI	CCNGG	4 cut(s)	743, 2967, 3154, 3161
BstSFI	CTRYAG	6 cut(s)	1191, 1320, 1516, 1803, 1987, 3127
BstSLI	GKGCMC	4 cut(s)	340, 544, 851, 2146
BstUI	CGCG	1 cut(s)	2451
BstV2I	GAAGAC	2 cut(s)	2281, 2742
BstX2I	RGATCY	3 cut(s)	255, 2543, 2611
BstYI	RGATCY	3 cut(s)	255, 2543, 2611
BstZ17I	GTATAC	1 cut(s)	1849
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	6 cut(s)	1200, 1855, 2035, 2425, 2966, 3365
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	1026
BtgZI	GCGATG	2 cut(s)	2466, 2851
BtsIMutI	CAGTG	5 cut(s)	226, 340, 710, 900, 1268
BtuMI	TCGCGA	1 cut(s)	2451
Cac8I	GCNNGC	8 cut(s)	1046, 1176, 1198, 1584, 2007, 2475, 3091, 3363
CaiI	CAGNNNCTG	7 cut(s)	701, 806, 1067, 1844, 2101, 2372, 2968
CciI	TCATGA	1 cut(s)	1105
CfoI	GCGC	1 cut(s)	2956
Cfr10I	RCCGGY	3 cut(s)	369, 1851, 3361
Cfr13I	GGNCC	6 cut(s)	1645, 1772, 1957, 2034, 2965, 3152
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	2 cut(s)	317, 2288
Csp6I	GTAC	6 cut(s)	367, 683, 1619, 2000, 2316, 3002
CspAI	ACCGGT	1 cut(s)	369
CspCI	CAANNNNNGTGG	4 cut(s)	485, 520, 1960, 1995
CviQI	GTAC	6 cut(s)	367, 683, 1619, 2000, 2316, 3002
EaeI	YGGCCR	1 cut(s)	3363
Eam1104I	CTCTTC	3 cut(s)	48, 1671, 2556
EarI	CTCTTC	3 cut(s)	48, 1671, 2556
EciI	GGCGGA	1 cut(s)	3334
Eco130I	CCWWGG	2 cut(s)	1026, 1732
Eco32I	GATATC	2 cut(s)	1266, 2284
Eco47I	GGWCC	4 cut(s)	1645, 1772, 1957, 3152
Eco57I	CTGAAG	7 cut(s)	320, 336, 876, 932, 1614, 2349, 2524
Eco91I	GGTNACC	1 cut(s)	1391
EcoNI	CCTNNNNNAGG	1 cut(s)	1821
EcoO109I	RGGNCCY	2 cut(s)	1645, 2965
EcoO65I	GGTNACC	1 cut(s)	1391
EcoRII	CCWGG	4 cut(s)	743, 2967, 3154, 3161
EcoRV	GATATC	2 cut(s)	1266, 2284
EcoT14I	CCWWGG	2 cut(s)	1026, 1732
EcoT22I	ATGCAT	1 cut(s)	2881
ErhI	CCWWGG	2 cut(s)	1026, 1732
Esp3I	CGTCTC	2 cut(s)	335, 2684
FalI	AAGNNNNNCTT	4 cut(s)	1338, 1370, 2118, 2150
FaqI	GGGAC	4 cut(s)	18, 1230, 1631, 2112
FauI	CCCGC	1 cut(s)	1575
FauNDI	CATATG	1 cut(s)	2703
FblI	GTMKAC	2 cut(s)	1848, 2083
FspBI	CTAG	7 cut(s)	602, 1629, 2595, 2607, 3014, 3090, 3189
GlaI	GCGC	1 cut(s)	2955
GsaI	CCCAGC	2 cut(s)	82, 2528
GsuI	CTGGAG	4 cut(s)	15, 1530, 1780, 2267
HaeIII	GGCC	6 cut(s)	1200, 1855, 2035, 2425, 2966, 3365
HapII	CCGG	6 cut(s)	370, 962, 1852, 2032, 2221, 3362
HgaI	GACGC	2 cut(s)	317, 2288
HhaI	GCGC	1 cut(s)	2956
Hin1I	GRCGYC	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	2954
HinP1I	GCGC	1 cut(s)	2954
HincII	GTYRAC	4 cut(s)	567, 1438, 2084, 2170
HindII	GTYRAC	4 cut(s)	567, 1438, 2084, 2170
HindIII	AAGCTT	1 cut(s)	1176
HpaII	CCGG	6 cut(s)	370, 962, 1852, 2032, 2221, 3362
HphI	GGTGA	5 cut(s)	158, 647, 770, 920, 1296
HpyCH4III	ACNGT	8 cut(s)	221, 535, 1221, 1272, 1540, 2103, 2579, 3409
HpyCH4IV	ACGT	4 cut(s)	128, 1252, 1779, 2671
HpySE526I	ACGT	4 cut(s)	128, 1252, 1779, 2671
Hsp92I	GRCGYC	1 cut(s)	128
HspAI	GCGC	1 cut(s)	2954
Kpn2I	TCCGGA	1 cut(s)	961
KpnI	GGTACC	2 cut(s)	370, 686
KroI	GCCGGC	1 cut(s)	3361
KroNI	GCCGGC	1 cut(s)	3363
LmnI	GCTCC	4 cut(s)	166, 1003, 1321, 1411
MaeI	CTAG	7 cut(s)	602, 1629, 2595, 2607, 3014, 3090, 3189
MaeII	ACGT	4 cut(s)	128, 1252, 1779, 2671
MaeIII	GTNAC	6 cut(s)	376, 758, 1221, 1391, 1504, 1916
MfeI	CAATTG	4 cut(s)	2070, 2649, 2684, 2949
MflI	RGATCY	3 cut(s)	255, 2543, 2611
MhlI	GDGCHC	7 cut(s)	340, 544, 851, 2044, 2146, 3109, 3115
MlyI	GAGTC	1 cut(s)	2519
MmeI	TCCRAC	1 cut(s)	2921
Mph1103I	ATGCAT	1 cut(s)	2881
MroI	TCCGGA	1 cut(s)	961
MroNI	GCCGGC	1 cut(s)	3361
MseI	TTAA	7 cut(s)	656, 752, 1128, 1149, 2399, 2430, 2988
MspA1I	CMGCKG	5 cut(s)	650, 698, 1064, 1196, 2024
MspI	CCGG	6 cut(s)	370, 962, 1852, 2032, 2221, 3362
MspR9I	CCNGG	4 cut(s)	745, 2969, 3156, 3163
MunI	CAATTG	4 cut(s)	2070, 2649, 2684, 2949
Mva1269I	GAATGC	2 cut(s)	1559, 2027
MvaI	CCWGG	4 cut(s)	745, 2969, 3156, 3163
MvnI	CGCG	1 cut(s)	2451
NaeI	GCCGGC	1 cut(s)	3363
NcoI	CCATGG	1 cut(s)	1026
NdeI	CATATG	1 cut(s)	2703
NgoMIV	GCCGGC	1 cut(s)	3361
NheI	GCTAGC	1 cut(s)	3089
NlaIV	GGNNCC	8 cut(s)	368, 432, 541, 684, 1317, 1647, 2814, 3160
NmeAIII	GCCGAG	1 cut(s)	1165
NmuCI	GTSAC	1 cut(s)	758
NruI	TCGCGA	1 cut(s)	2451
NsiI	ATGCAT	1 cut(s)	2881
NspI	RCATGY	4 cut(s)	617, 1048, 2048, 3052
NspV	TTCGAA	1 cut(s)	2352
PaeI	GCATGC	1 cut(s)	1048
PagI	TCATGA	1 cut(s)	1105
PctI	GAATGC	2 cut(s)	1559, 2027
PdiI	GCCGGC	1 cut(s)	3363
PfeI	GAWTC	9 cut(s)	98, 275, 1358, 1421, 1576, 2369, 2489, 3173, 3231
PfoI	TCCNGGA	1 cut(s)	3161
PinAI	ACCGGT	1 cut(s)	369
PleI	GAGTC	1 cut(s)	2518
PpsI	GAGTC	1 cut(s)	2518
Ppu21I	YACGTR	1 cut(s)	2672
PpuMI	RGGWCCY	1 cut(s)	1645
PsiI	TTATAA	1 cut(s)	594
Psp1406I	AACGTT	1 cut(s)	1779
Psp5II	RGGWCCY	1 cut(s)	1645
Psp6I	CCWGG	4 cut(s)	743, 2967, 3154, 3161
PspEI	GGTNACC	1 cut(s)	1391
PspFI	CCCAGC	2 cut(s)	78, 2524
PspGI	CCWGG	4 cut(s)	743, 2967, 3154, 3161
PspN4I	GGNNCC	8 cut(s)	368, 432, 541, 684, 1317, 1647, 2814, 3160
PspPI	GGNCC	6 cut(s)	1645, 1772, 1957, 2034, 2965, 3152
PspPPI	RGGWCCY	1 cut(s)	1645
PstI	CTGCAG	2 cut(s)	1324, 1807
PstNI	CAGNNNCTG	7 cut(s)	701, 806, 1067, 1844, 2101, 2372, 2968
PsuI	RGATCY	3 cut(s)	255, 2543, 2611
PvuII	CAGCTG	5 cut(s)	650, 698, 1064, 1196, 2024
RruI	TCGCGA	1 cut(s)	2451
RsaI	GTAC	6 cut(s)	368, 684, 1620, 2001, 2317, 3003
RsaNI	GTAC	6 cut(s)	367, 683, 1619, 2000, 2316, 3002
SalI	GTCGAC	1 cut(s)	2082
SaqAI	TTAA	7 cut(s)	656, 752, 1128, 1149, 2399, 2430, 2988
Sau96I	GGNCC	6 cut(s)	1645, 1772, 1957, 2034, 2965, 3152
SbfI	CCTGCAGG	1 cut(s)	1324
SchI	GAGTC	1 cut(s)	2519
ScrFI	CCNGG	4 cut(s)	745, 2969, 3156, 3163
SdaI	CCTGCAGG	1 cut(s)	1324
SduI	GDGCHC	7 cut(s)	340, 544, 851, 2044, 2146, 3109, 3115
SfcI	CTRYAG	6 cut(s)	1191, 1320, 1516, 1803, 1987, 3127
SfuI	TTCGAA	1 cut(s)	2352
SinI	GGWCC	4 cut(s)	1645, 1772, 1957, 3152
SmlI	CTYRAG	5 cut(s)	1156, 1500, 2198, 2381, 2660
SmoI	CTYRAG	5 cut(s)	1156, 1500, 2198, 2381, 2660
SpeI	ACTAGT	1 cut(s)	2594
SphI	GCATGC	1 cut(s)	1048
Sse8387I	CCTGCAGG	1 cut(s)	1324
SsiI	CCGC	7 cut(s)	262, 385, 1340, 1582, 2240, 2422, 3319
SspI	AATATT	1 cut(s)	2469
SspMI	CTAG	7 cut(s)	602, 1629, 2595, 2607, 3014, 3090, 3189
StyD4I	CCNGG	4 cut(s)	743, 2967, 3154, 3161
StyI	CCWWGG	2 cut(s)	1026, 1732
TaaI	ACNGT	8 cut(s)	221, 535, 1221, 1272, 1540, 2103, 2579, 3409
TaiI	ACGT	4 cut(s)	131, 1255, 1782, 2674
TaqI	TCGA	7 cut(s)	69, 736, 2083, 2286, 2352, 3057, 3288
TatI	WGTACW	2 cut(s)	1618, 3001
TauI	GCSGC	3 cut(s)	388, 1343, 2425
TfiI	GAWTC	9 cut(s)	98, 275, 1358, 1421, 1576, 2369, 2489, 3173, 3231
Tru1I	TTAA	7 cut(s)	656, 752, 1128, 1149, 2399, 2430, 2988
Tru9I	TTAA	7 cut(s)	656, 752, 1128, 1149, 2399, 2430, 2988
TscAI	CASTG	5 cut(s)	226, 340, 717, 900, 1275
TseFI	GTSAC	1 cut(s)	758
Tsp45I	GTSAC	1 cut(s)	758
TspRI	CASTG	5 cut(s)	226, 340, 717, 900, 1275
VpaK11BI	GGWCC	4 cut(s)	1645, 1772, 1957, 3152
XagI	CCTNNNNNAGG	1 cut(s)	1821
XapI	RAATTY	6 cut(s)	968, 2159, 2329, 2416, 3345, 3391
XbaI	TCTAGA	1 cut(s)	3188
XceI	RCATGY	4 cut(s)	617, 1048, 2048, 3052
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1403, 1978, 2890
XmiI	GTMKAC	2 cut(s)	1848, 2083
XspI	CTAG	7 cut(s)	602, 1629, 2595, 2607, 3014, 3090, 3189
ZraI	GACGTC	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	2881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.