Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008481

Physical Location & Seq

Genomic Coordinates Forward (+)

41644043 .. 41650093

Gene Structure 6051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0299600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGAGATTCTGAAGGAGGAGCTTTCACCGGCTGACTTTAAGGCAACTAAAAGTAACCGAATCAGATATTCTAGAAATGACTTTAGACAGCTTCCTTATTTCGCAACTGACTTTGAATGGAAAGATTATAGCCCTGCAGTTTTCAGACGTATACTGGAGCTTGACAGTATTGAATATTCCGATTACCAGTTGTCAGTATGTGGAGATGAGACTCTAAAGGAGGTTACGCTTTCGGGGAAACTTGGTATGGTGTTTTTATTGTCCAACGACAAACGGTTTATTCTCAAAACCCTGCGCAAATCTGAGGTGAAGATCTACCTAGAGATGCTTCCCAACTACTACGACCATCTCATGAAGTATGGATCCTCACTACTAGCCAAACTGTATGGACTTCATGTTGTCAGGCCAGCAGGAGGTGTTAAGGTTTACTTTGTTGTTTTTGGAAACGTAATCCCGTCCGATATTTGCATATTTGAGCATTATGACCTCAAAGGCTCTTCAAAAGGTCGAGCAGAGAACAAAGTCATTATTCAGGAGAGACCCGTACATAAGGATATGGATTTTGATTTTCGCTTTTACCTGGATCCATTGGTTCGAGACCAGCTCTTAGCGCAAATCAAGACTGACTGCGAGTTTTTGGAATCTGAAGGCGTCATGGATTATAGTTTGTTTCTTGCTATACAAATAGAATCTCCACATCAAGTTGATAAAAGAACTTCCAGAAGGACTGATAAAGAGATAATAGACGATACTTCAGAAGGAAGTGATGAAAGCTCAGAGTTAACTCTTGCTGATATTTGCGACCTACTTGACAGGCCTGGTTTTAGATTTGGTGCAAACCTGCCAGCACGTGCTGTCCGGGCCTTCAAGAAAGAAATGGGAAGTTCGAGATCAAATAGGTCCAGAAATTCCAGAGCACAGTCATCAGCACAGGAATGCTTCAATGTTCTTTTATTCTTTGGAATAGTAGATATTTGTCAGAATTACAATATGAGAAAACGCCTTGAGCATGCTTGCAAGTCCATTAAATATGACTCAAAGTCCATTGCAACTGTGAACCCCAAAGCTTATTCTTCTCGCTTTCAAGAGTTTATGAGCGAAGTGTTTCTACCAGAAGTGTCGGACGACTTTTCTGATAGCCGGGTCTCAGGCGCATCATCATCTAACAGGGTCTCAGCCGCATCATCATCGAAGATTTCTGTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006887 GO:0006892 GO:0006893 GO:0006903 GO:0007154 GO:0007275 GO:0008037 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009791 GO:0009856 GO:0009875 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0022414 GO:0030054 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043230 GO:0044237 GO:0044249 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048316 GO:0048354 GO:0048359 GO:0048544 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0055044 GO:0060321 GO:0061458 GO:0070062 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec8_exocyst

Protein Analysis

402

Amino Acids

46.06

Weight (kDa)

7.01

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIP5K	PF01504	67 - 367	4.5e-79	Phosphatidylinositol-4-phosphate 5-Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10380 AT3G10380
fragaria_vesca	FvH4_7g18760 FvH4_7g18760
malus_domestica	MD01G1103100.v1.1 MD07G1169800.v1.1
prunus_persica	Prupe.2G208700_v2.0.a1 Prupe.2G208700_v2.0.a1
pyrus_communis	pycom01g12960 pycom07g16370
rosa_chinensis	RchiOBHm_Chr1g0362571
rosa_laevigata	RLG00000027638
rosa_multiflora	Rmu_sc0005725.1_g000007
rosa_roxburghii	Rroxscaffold_4G00293960
rosa_rugosa	Rorug01G0299600 Rorug01G0299600 Rorug01G0299600 Rorug01G0299700
rosa_samantha	Rh1AG308300 Rh1BG271600 Rh1CG289200 Rh1DG301900
rosa_wichuraiana	Rw1G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	849
AccI	GTMKAC	1 cut(s)	151
AciI	CCGC	1 cut(s)	1179
AclWI	GGATC	4 cut(s)	357, 370, 578, 591
AcsI	RAATTY	1 cut(s)	907
AcuI	CTGAAG	3 cut(s)	32, 666, 738
AcvI	CACGTG	1 cut(s)	851
AcyI	GRCGYC	1 cut(s)	651
AfaI	GTAC	1 cut(s)	546
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	6 cut(s)	116, 173, 501, 868, 943, 1085
AhdI	GACNNNNNGTC	1 cut(s)	1039
AjnI	CCWGG	2 cut(s)	579, 817
AluBI	AGCT	6 cut(s)	22, 91, 160, 604, 774, 1067
AluI	AGCT	6 cut(s)	22, 91, 160, 604, 774, 1067
Alw21I	GWGCWC	1 cut(s)	919
Alw26I	GTCTC	5 cut(s)	203, 532, 591, 1150, 1177
AlwI	GGATC	4 cut(s)	357, 370, 578, 591
AoxI	GGCC	3 cut(s)	404, 815, 861
ApoI	RAATTY	1 cut(s)	907
Asp700I	GAANNNNTTC	1 cut(s)	1104
AspLEI	GCGC	3 cut(s)	297, 613, 1154
AspS9I	GGNCC	2 cut(s)	861, 900
AsuC2I	CCSGG	2 cut(s)	860, 1142
AsuHPI	GGTGA	2 cut(s)	18, 319
AvaII	GGWCC	1 cut(s)	900
BamHI	GGATCC	2 cut(s)	362, 583
BarI	GAAGNNNNNNTAC	2 cut(s)	1092, 1124
BbrPI	CACGTG	1 cut(s)	851
Bbv12I	GWGCWC	1 cut(s)	919
BccI	CCATC	1 cut(s)	354
BcgI	CGANNNNNNTGC	2 cut(s)	1170, 1204
BciT130I	CCWGG	2 cut(s)	581, 819
BcnI	CCSGG	2 cut(s)	860, 1142
BcoDI	GTCTC	5 cut(s)	203, 532, 591, 1150, 1177
BfaI	CTAG	3 cut(s)	72, 320, 374
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	849
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	1 cut(s)	1179
BlsI	GCNGC	1 cut(s)	1180
Bme1390I	CCNGG	4 cut(s)	581, 819, 860, 1142
Bme18I	GGWCC	1 cut(s)	900
BmeRI	GACNNNNNGTC	1 cut(s)	1039
BmgT120I	GGNCC	2 cut(s)	861, 900
BmiI	GGNNCC	2 cut(s)	364, 585
BmrFI	CCNGG	4 cut(s)	581, 819, 860, 1142
BmsI	GCATC	3 cut(s)	315, 1163, 1190
BplI	GAGNNNNNCTC	2 cut(s)	588, 620
BpmI	CTGGAG	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	1025
BpuMI	CCSGG	2 cut(s)	860, 1142
BsaAI	YACGTR	1 cut(s)	851
BsaHI	GRCGYC	1 cut(s)	651
BsaI	GGTCTC	4 cut(s)	532, 591, 1150, 1177
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	159, 187
Bse3DI	GCAATG	1 cut(s)	1044
BseBI	CCWGG	2 cut(s)	581, 819
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	1044
BseMII	CTCAG	4 cut(s)	294, 789, 1161, 1188
BseNI	ACTGG	2 cut(s)	159, 187
BseRI	GAGGAG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	406, 817, 863
BsiHKAI	GWGCWC	1 cut(s)	919
BsiSI	CCGG	3 cut(s)	29, 859, 1141
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	5 cut(s)	203, 532, 591, 1150, 1177
BsmI	GAATGC	1 cut(s)	941
BsnI	GGCC	3 cut(s)	406, 817, 863
Bso31I	GGTCTC	4 cut(s)	532, 591, 1150, 1177
Bsp1286I	GDGCHC	1 cut(s)	919
Bsp143I	GATC	4 cut(s)	312, 362, 583, 890
BspACI	CCGC	1 cut(s)	1179
BspANI	GGCC	3 cut(s)	406, 817, 863
BspCNI	CTCAG	4 cut(s)	295, 788, 1160, 1187
BspHI	TCATGA	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	364, 585
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	849
BspPI	GGATC	4 cut(s)	357, 370, 578, 591
BspQI	GCTCTTC	1 cut(s)	502
BspTNI	GGTCTC	4 cut(s)	532, 591, 1150, 1177
BsrDI	GCAATG	1 cut(s)	1044
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	2 cut(s)	159, 187
BssAI	RCCGGY	1 cut(s)	28
BssMI	GATC	4 cut(s)	312, 362, 583, 890
BssNAI	GTATAC	1 cut(s)	152
BssNI	GRCGYC	1 cut(s)	651
Bst1107I	GTATAC	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	581, 819
Bst4CI	ACNGT	5 cut(s)	167, 276, 384, 921, 1054
Bst6I	CTCTTC	1 cut(s)	502
BstACI	GRCGYC	1 cut(s)	651
BstBAI	YACGTR	1 cut(s)	851
BstC8I	GCNNGC	4 cut(s)	408, 846, 1011, 1015
BstDEI	CTNAG	5 cut(s)	303, 607, 775, 1147, 1174
BstHHI	GCGC	3 cut(s)	297, 613, 1154
BstKTI	GATC	4 cut(s)	315, 365, 586, 893
BstMAI	GTCTC	5 cut(s)	203, 532, 591, 1150, 1177
BstMBI	GATC	4 cut(s)	312, 362, 583, 890
BstMWI	GCNNNNNNNGC	2 cut(s)	610, 860
BstNI	CCWGG	2 cut(s)	581, 819
BstNSI	RCATGY	1 cut(s)	1013
BstSCI	CCNGG	4 cut(s)	579, 817, 858, 1140
BstSFI	CTRYAG	1 cut(s)	135
BstX2I	RGATCY	3 cut(s)	312, 362, 583
BstYI	RGATCY	3 cut(s)	312, 362, 583
BstZ17I	GTATAC	1 cut(s)	152
BsuRI	GGCC	3 cut(s)	406, 817, 863
BveI	ACCTGC	1 cut(s)	849
Cac8I	GCNNGC	4 cut(s)	408, 846, 1011, 1015
CciI	TCATGA	1 cut(s)	351
CfoI	GCGC	3 cut(s)	297, 613, 1154
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	861, 900
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	4 cut(s)	352, 395, 655, 1010
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	5 cut(s)	303, 607, 775, 1147, 1174
DpnI	GATC	4 cut(s)	314, 364, 585, 892
DpnII	GATC	4 cut(s)	312, 362, 583, 890
DriI	GACNNNNNGTC	1 cut(s)	1039
Eam1104I	CTCTTC	1 cut(s)	502
Eam1105I	GACNNNNNGTC	1 cut(s)	1039
EarI	CTCTTC	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	817
Eco31I	GGTCTC	4 cut(s)	532, 591, 1150, 1177
Eco47I	GGWCC	1 cut(s)	900
Eco57I	CTGAAG	3 cut(s)	32, 666, 738
Eco72I	CACGTG	1 cut(s)	851
EcoRII	CCWGG	2 cut(s)	579, 817
FaeI	CATG	4 cut(s)	355, 398, 658, 1013
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FatI	CATG	4 cut(s)	351, 394, 654, 1009
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	1179
Fsp4HI	GCNGC	1 cut(s)	1179
FspBI	CTAG	3 cut(s)	72, 320, 374
FspI	TGCGCA	1 cut(s)	296
GlaI	GCGC	3 cut(s)	296, 612, 1153
GluI	GCNGC	1 cut(s)	1179
GsuI	CTGGAG	1 cut(s)	176
HaeIII	GGCC	3 cut(s)	406, 817, 863
HapII	CCGG	3 cut(s)	29, 859, 1141
HgaI	GACGC	1 cut(s)	640
HhaI	GCGC	3 cut(s)	297, 613, 1154
Hin1I	GRCGYC	1 cut(s)	651
Hin1II	CATG	4 cut(s)	355, 398, 658, 1013
Hin6I	GCGC	3 cut(s)	295, 611, 1152
HinP1I	GCGC	3 cut(s)	295, 611, 1152
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HindIII	AAGCTT	1 cut(s)	1065
HinfI	GANTC	6 cut(s)	7, 60, 211, 641, 689, 1034
HpaI	GTTAAC	1 cut(s)	783
HpaII	CCGG	3 cut(s)	29, 859, 1141
HphI	GGTGA	2 cut(s)	18, 319
Hpy166II	GTNNAC	4 cut(s)	152, 427, 783, 1057
Hpy8I	GTNNAC	4 cut(s)	152, 427, 783, 1057
HpyAV	CCTTC	5 cut(s)	7, 641, 717, 752, 874
HpyCH4III	ACNGT	5 cut(s)	167, 276, 384, 921, 1054
HpyCH4IV	ACGT	3 cut(s)	148, 447, 850
HpyCH4V	TGCA	5 cut(s)	137, 468, 836, 1017, 1049
HpyF10VI	GCNNNNNNNGC	2 cut(s)	610, 860
HpyF3I	CTNAG	5 cut(s)	303, 607, 775, 1147, 1174
HpySE526I	ACGT	3 cut(s)	148, 447, 850
Hsp92I	GRCGYC	1 cut(s)	651
Hsp92II	CATG	4 cut(s)	355, 398, 658, 1013
HspAI	GCGC	3 cut(s)	295, 611, 1152
KspAI	GTTAAC	1 cut(s)	783
Kzo9I	GATC	4 cut(s)	312, 362, 583, 890
LguI	GCTCTTC	1 cut(s)	502
LmnI	GCTCC	2 cut(s)	19, 157
LweI	GCATC	3 cut(s)	315, 1163, 1190
MaeI	CTAG	3 cut(s)	72, 320, 374
MaeII	ACGT	3 cut(s)	148, 447, 850
MaeIII	GTNAC	2 cut(s)	53, 223
MalI	GATC	4 cut(s)	314, 364, 585, 892
MboI	GATC	4 cut(s)	312, 362, 583, 890
MboII	GAAGA	4 cut(s)	322, 489, 1065, 1204
MflI	RGATCY	3 cut(s)	312, 362, 583
MhlI	GDGCHC	1 cut(s)	919
MluCI	AATT	2 cut(s)	907, 982
MlyI	GAGTC	2 cut(s)	205, 1028
MmeI	TCCRAC	2 cut(s)	288, 1101
MnlI	CCTC	6 cut(s)	10, 214, 298, 376, 407, 497
MroXI	GAANNNNTTC	1 cut(s)	1104
MseI	TTAA	4 cut(s)	39, 420, 782, 1026
MslI	CAYNNNNRTG	1 cut(s)	934
MspI	CCGG	3 cut(s)	29, 859, 1141
MspR9I	CCNGG	4 cut(s)	581, 819, 860, 1142
Mva1269I	GAATGC	1 cut(s)	941
MvaI	CCWGG	2 cut(s)	581, 819
MwoI	GCNNNNNNNGC	2 cut(s)	610, 860
NciI	CCSGG	2 cut(s)	860, 1142
NdeII	GATC	4 cut(s)	312, 362, 583, 890
NlaIII	CATG	4 cut(s)	355, 398, 658, 1013
NlaIV	GGNNCC	2 cut(s)	364, 585
NsbI	TGCGCA	1 cut(s)	296
NspI	RCATGY	1 cut(s)	1013
PaeI	GCATGC	1 cut(s)	1013
PagI	TCATGA	1 cut(s)	351
PceI	AGGCCT	1 cut(s)	817
PciSI	GCTCTTC	1 cut(s)	502
PctI	GAATGC	1 cut(s)	941
PdmI	GAANNNNTTC	1 cut(s)	1104
PfeI	GAWTC	4 cut(s)	7, 60, 641, 689
PkrI	GCNGC	1 cut(s)	1180
PleI	GAGTC	2 cut(s)	205, 1028
PmaCI	CACGTG	1 cut(s)	851
PmlI	CACGTG	1 cut(s)	851
PpsI	GAGTC	2 cut(s)	205, 1028
Ppu21I	YACGTR	1 cut(s)	851
Psp6I	CCWGG	2 cut(s)	579, 817
PspCI	CACGTG	1 cut(s)	851
PspGI	CCWGG	2 cut(s)	579, 817
PspN4I	GGNNCC	2 cut(s)	364, 585
PspPI	GGNCC	2 cut(s)	861, 900
PstI	CTGCAG	1 cut(s)	139
PsuI	RGATCY	3 cut(s)	312, 362, 583
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	934
SapI	GCTCTTC	1 cut(s)	502
SaqAI	TTAA	4 cut(s)	39, 420, 782, 1026
SatI	GCNGC	1 cut(s)	1179
Sau3AI	GATC	4 cut(s)	312, 362, 583, 890
Sau96I	GGNCC	2 cut(s)	861, 900
SchI	GAGTC	2 cut(s)	205, 1028
ScrFI	CCNGG	4 cut(s)	581, 819, 860, 1142
SduI	GDGCHC	1 cut(s)	919
SfaNI	GCATC	3 cut(s)	315, 1163, 1190
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	900
SmiMI	CAYNNNNRTG	1 cut(s)	934
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
SphI	GCATGC	1 cut(s)	1013
Sse9I	AATT	2 cut(s)	907, 982
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	1 cut(s)	1179
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	3 cut(s)	72, 320, 374
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	4 cut(s)	579, 817, 858, 1140
TaaI	ACNGT	5 cut(s)	167, 276, 384, 921, 1054
TaiI	ACGT	3 cut(s)	151, 450, 853
TaqI	TCGA	4 cut(s)	508, 595, 887, 1190
TasI	AATT	2 cut(s)	907, 982
TauI	GCSGC	1 cut(s)	1181
TfiI	GAWTC	4 cut(s)	7, 60, 641, 689
Tru1I	TTAA	4 cut(s)	39, 420, 782, 1026
Tru9I	TTAA	4 cut(s)	39, 420, 782, 1026
TspDTI	ATGAA	3 cut(s)	368, 383, 783
VpaK11BI	GGWCC	1 cut(s)	900
XapI	RAATTY	1 cut(s)	907
XbaI	TCTAGA	1 cut(s)	71
XceI	RCATGY	1 cut(s)	1013
XmiI	GTMKAC	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	1104
XspI	CTAG	3 cut(s)	72, 320, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.