Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008481

Physical Location & Seq

Genomic Coordinates Forward (+)

13543390 .. 13557056

Gene Structure 13667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12960.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3195 bp

ATGGGACTTTTTGATGGATTGCCCGTGTCTTCAGACAAGGCATATCTGAGGGAAGAGATTGCAAGGATAGATGAGAGCTGGGCTGCTGCTCGTTTTGATTCATTACCTCATGTTGTTCATATTTTGACATCCAAAGATCGTGAAGGTGACATCCAGGTTTTGAAGGAGCAAAGTGATGTTGTTGAGGAGGTTGTGGATGAAGTTGTGCATAATTATCACAGTGGCTTCAACAAAGCAATTCAAAATTATTCTCAGATCTTGCGGTTGTTCAGCGAATCTACTGAAAGTGTTGGTGTTCTAAAGGTTGATTTGGCTGAAGCAAAGAAGCGTCTCAGTGCCCGTAGTAAACAACTGCATCAGTTATGGTACCGGTCAGTTACTTTGCGTCACATAATATCCCTCTTAGATCAAATTGAGGGCATATCTAAGGTTCCAGCTCGGATTGAGAAGCTGATTGCCGAAAAGCAGTATTATGCTGCTGTTCAATTTCATGTTCAATCAATGTTGATGCTTGAAAGAGAGGGGCTTCAAACGGTCGGTGCCCTTCAAGACGTTCGCTCTGAGTTAACAAAGTTGCGAGGAGTTCTGTTTCATAAAGTGCTAGAGGATTTGCATGTTCATCTTTACAACAAGGGTGAATATAGTTCAGATGCTTTAAGTTTGCAAGAATTGGATGATGAAGTACCAACCACCACCGCTGCTGTATTGACTAATTCACAATCCTTGTCTCGAAGAACCAGGCTGTTAAAAGGTGACAATCAGTTCGGTATTCAAGGAGATGGATCATATAGGACAGGTTCTATTGATGGAGGTTCTTCTTTTGATGGAGTTGATGAGGAGGTCACTTTGGAACTGCATGAGGAAGCTACCTCAGATGGGCAGACATCAGTGAGGGTCAATGGTGATGTCAAAATTGTTCCTCGTGAGATGCCAACATGGCTTCAGTATTCCACTCCGGACGAATTTCTTGAAGCAATAAAGAAAAGTGATGCTCCACTTCATGTCAAGTATTTGCAGACCATGGTTGAGTGCCTTTGCATGCTTAGGAAAGTTGCAGCTGCTGGTGCTATAATATGCCAAAGATTGCGACCTACAATTCATGAGATCATCACATCCAAGATTAAAGCTCATGCTGAACTTGCTAATTCTTCAAGGTCTGGCATTGGGCAAGCTTCCCGAACAACGGCTGGTCTACATTTCATGAAGGGACAGTTACAAAGTTATCAGTTGCCAAAACAGAAGCGTCAGAATGGGATATTACTGTCTGGAACTCTATTGGCAGTAAGCCCAGTCTCATCTGTAATGGCTCCTGCAGGGAAAGCACAAGCCATGGCAAAAGAACTTCTTGATTCAATTTTGGATGTTGTTGTTCGGATATTTGAGAACCATGTTGTTGTTGGGGAGCTTTTGGAATCAAAGTCCTCTGTTCAAATAGACATGAACACACCAAAATCAATGCCAACGGATGTAAATTGGAATACCGATTTGGAAGCATCTCAAGTTACTGGAGGCTATAGCATTGGTTTTTCCTTGACAGTATTACAGAGTGAATGCCAACAACTTATTTGTGAGATTCTGCGGGCAACTCCTGAAGCTGCATCTGCTGATGCTGCTGTACAAACAGCTAGACTTGCAAACAAGGTCCCTTCCAAAGACAAGAGGGATGATGCAGAAGGGGGTCTTACCTTTGCTTTTCGCTTCACAGATGCTACTATTTCTGTTCCCAACCAAGGGGTTGATCTCATTCGTCAAGGCTGGAGTAGGAAAGGTCCAAATGTTTCACAAGAAGGTTATGGGTCTGCAGCTATCTTGCCTGAGCAAGGCATATATCTTGCAGCATCTGTATACCGGCCTGTTATTCAGTTTACAGATAAGGTCGCATCAATGCTTCCGAAAAAGTATTCCCAGCTAGGTAACGATGGATTGCTGGCTTTTGTGGAGAATTTTGTGAAGGACCATTTTCTACCCACGATGTTTGTGGACTACAGAAAAGGAGTACAGCAAGCTATATCAAGTCCAGCTGCATTCCGGCCCAGAGCACATGCTGCTGCATCTTATACTCCGTCAGTTGAGAAGGGTCGACCTGTCTTACAGGGACTGTTGGCAATAGATTTTTTAGCAAAAGAGGTGCTTGGTTGGGCACAAGCTATGCCTAAATTTGCCATAGACCTTGTGAAATATGTGCAAACTTTCCTTGAGCGAACCTATGAACGATGCCGGACCTCATACATGGAGGCAGTTCTGGAGAAACAGAGCTATATGCTCATTGGAAGGTATGATATCGAGCAATTGATGCGTCTTGATCCAGCAAGTACATGTTTACCAATTTCCCTTGGTCAGTCAAACATTGAAACCCATGCTTCGGATTCTGAAAATCTTGAGGTTGAATTACAATTAAGCGACCTATTATTGAATTTGCGGCCTATTAAGCAGGATAATCTAATTCGTGATGATAACAAACTAATATTGCTGGCTTCCCTTAGTGATTCATTGGAGTATGTTGCGGACTCTATTGAAAGGCTTGGGCAGACAACCTTCAGGTCTCCAAATGAAGTAGAAGAGAGTGGTATGAACCGTCATCAACGAACAACTAGTGCTGCTTCTAGGGATCTGGTATCGTTTGCAGATGAGTATAGAAAATTGGCAATTGACTGCCTCAAGGTTTTACGTGTTGAGATGCAATTGGAGACAATTTTCCATATGCAGGAAATGACAAATAGGGAATACATGGAAGACCAAGATGCAGAAGAACCAGATGATTTCATTATTTCACTTACTGCACAGATAACACGCAGGGATGAGGAAATGGCACCTTTTGTTGTGGGAACGAAGCGAAACTACATATTTGGTGGGATTTGTAGCATCGCTGCAAATGCATCCATCAAGGCTTTGGCTGATATGAAATCCATCAACCTTTTTGGCGTTCAGCAGATATGTCGGAATTCAATCGCGCTGGAACAGGCCCTGGCTGCTATCCCATCAATTAACAGTGAAGGTGTCCAACAACGACTAGATCATGTCCGAACTTACTATGAACTCCTAAACATGCCATTCGAGGCCTTGCTAGCTTTCATCACAGAGCACGAGCACTTGTTTACGACTACAGAGTATGCAAATCTTCTGAAGGTCCAGGTTCCAGGAAGGGAGATTCCTGCCGATGCTCAAGATCGTGTATCAGAGATTTTATCCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006887 GO:0006892 GO:0006893 GO:0006903 GO:0007154 GO:0007275 GO:0008037 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009791 GO:0009856 GO:0009875 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0022414 GO:0030054 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043230 GO:0044237 GO:0044249 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048316 GO:0048354 GO:0048359 GO:0048544 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0055044 GO:0060321 GO:0061458 GO:0070062 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec8_exocyst

Protein Analysis

1065

Amino Acids

118.56

Weight (kDa)

5.42

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10380 AT3G10380
fragaria_vesca	FvH4_7g18760 FvH4_7g18760
malus_domestica	MD01G1103100.v1.1 MD07G1169800.v1.1
prunus_persica	Prupe.2G208700_v2.0.a1 Prupe.2G208700_v2.0.a1
pyrus_communis	pycom01g12960 pycom07g16370
rosa_chinensis	RchiOBHm_Chr1g0362571
rosa_laevigata	RLG00000027638
rosa_multiflora	Rmu_sc0005725.1_g000007
rosa_roxburghii	Rroxscaffold_4G00293960
rosa_rugosa	Rorug01G0299600 Rorug01G0299600 Rorug01G0299600 Rorug01G0299700
rosa_samantha	Rh1AG308300 Rh1BG271600 Rh1CG289200 Rh1DG301900
rosa_wichuraiana	Rw1G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	366
AccB1I	GGYRCC	3 cut(s)	366, 539, 2809
AccI	GTMKAC	3 cut(s)	1192, 1845, 2080
AccII	CGCG	1 cut(s)	2951
AccIII	TCCGGA	1 cut(s)	955
AciI	CCGC	5 cut(s)	262, 696, 1579, 2419, 2504
AclWI	GGATC	3 cut(s)	790, 2297, 2616
AcsI	RAATTY	5 cut(s)	962, 1942, 2156, 2413, 2941
AcuI	CTGAAG	6 cut(s)	15, 336, 926, 1611, 2521, 3143
AfaI	GTAC	5 cut(s)	368, 684, 1617, 1998, 2314
AfiI	CCNNNNNNNGG	7 cut(s)	876, 1183, 1730, 1731, 1820, 2362, 2704
AflIII	ACRYGT	2 cut(s)	2315, 2668
AgeI	ACCGGT	1 cut(s)	369
AhlI	ACTAGT	1 cut(s)	2591
AjnI	CCWGG	5 cut(s)	153, 737, 2964, 3129, 3136
AjuI	GAANNNNNNNTTGG	2 cut(s)	1469, 1501
Alw21I	GWGCWC	3 cut(s)	2041, 3084, 3090
Alw26I	GTCTC	5 cut(s)	335, 732, 1297, 2547, 2681
AlwI	GGATC	3 cut(s)	790, 2297, 2616
AlwNI	CAGNNNCTG	4 cut(s)	1061, 1841, 2098, 2965
Aor13HI	TCCGGA	1 cut(s)	955
AoxI	GGCC	5 cut(s)	1850, 2030, 2420, 2961, 3057
ApoI	RAATTY	5 cut(s)	962, 1942, 2156, 2413, 2941
ArsI	GACNNNNNNTTYG	2 cut(s)	746, 778
AsiGI	ACCGGT	1 cut(s)	369
Asp718I	GGTACC	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	2953
AspS9I	GGNCC	7 cut(s)	1642, 1769, 1954, 2031, 2220, 2962, 3127
AsuHPI	GGTGA	4 cut(s)	158, 647, 764, 914
AsuNHI	GCTAGC	1 cut(s)	3064
AvaII	GGWCC	5 cut(s)	1642, 1769, 1954, 2220, 3127
BaeGI	GKGCMC	3 cut(s)	340, 544, 2143
BanI	GGYRCC	3 cut(s)	366, 539, 2809
BarI	GAAGNNNNNNTAC	2 cut(s)	2822, 2854
BauI	CACGAG	2 cut(s)	921, 3083
BbsI	GAAGAC	2 cut(s)	21, 2739
Bbv12I	GWGCWC	3 cut(s)	2041, 3084, 3090
BccI	CCATC	9 cut(s)	8, 773, 800, 818, 869, 1913, 2888, 2915, 2986
BceAI	ACGGC	1 cut(s)	1200
BcgI	CGANNNNNNTGC	2 cut(s)	2918, 2952
BciT130I	CCWGG	5 cut(s)	155, 739, 2966, 3131, 3138
BcoDI	GTCTC	5 cut(s)	335, 732, 1297, 2547, 2681
BcuI	ACTAGT	1 cut(s)	2591
BfaI	CTAG	7 cut(s)	602, 1626, 1910, 2592, 2604, 3011, 3065
BfmI	CTRYAG	5 cut(s)	1311, 1513, 1800, 1984, 3102
BglI	GCCNNNNNGGC	1 cut(s)	937
BglII	AGATCT	1 cut(s)	255
Bme1390I	CCNGG	5 cut(s)	155, 739, 2966, 3131, 3138
Bme18I	GGWCC	5 cut(s)	1642, 1769, 1954, 2220, 3127
BmgT120I	GGNCC	7 cut(s)	1642, 1769, 1954, 2031, 2220, 2962, 3127
BmiI	GGNNCC	7 cut(s)	368, 432, 541, 1308, 1644, 2811, 3135
BmrFI	CCNGG	5 cut(s)	155, 739, 2966, 3131, 3138
BmrI	ACTGGG	1 cut(s)	1283
BmtI	GCTAGC	1 cut(s)	3068
BmuI	ACTGGG	1 cut(s)	1283
BpiI	GAAGAC	2 cut(s)	21, 2739
BpmI	CTGGAG	3 cut(s)	1527, 1777, 2264
Bpu10I	CCTNAGC	2 cut(s)	1043, 1815
BpuEI	CTTGAG	5 cut(s)	1482, 2216, 2399, 2642, 3147
BsaAI	YACGTR	1 cut(s)	2669
BsaI	GGTCTC	1 cut(s)	2547
BsaJI	CCNNGG	5 cut(s)	1020, 1329, 1729, 2332, 2964
BsaWI	WCCGGW	2 cut(s)	369, 955
Bsc4I	CCNNNNNNNGG	7 cut(s)	876, 1183, 1730, 1731, 1820, 2362, 2704
Bse118I	RCCGGY	2 cut(s)	369, 1848
Bse1I	ACTGG	2 cut(s)	1289, 1510
BseAI	TCCGGA	1 cut(s)	955
BseBI	CCWGG	5 cut(s)	155, 739, 2966, 3131, 3138
BseDI	CCNNGG	5 cut(s)	1020, 1329, 1729, 2332, 2964
BseLI	CCNNNNNNNGG	7 cut(s)	876, 1183, 1730, 1731, 1820, 2362, 2704
BseMII	CTCAG	6 cut(s)	38, 266, 346, 552, 885, 1806
BseNI	ACTGG	2 cut(s)	1289, 1510
BseRI	GAGGAG	3 cut(s)	200, 594, 851
BseSI	GKGCMC	3 cut(s)	340, 544, 2143
BseYI	CCCAGC	2 cut(s)	78, 1905
BsgI	GTGCAG	1 cut(s)	2763
Bsh1236I	CGCG	1 cut(s)	2951
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	5 cut(s)	1852, 2032, 2422, 2963, 3059
BshNI	GGYRCC	3 cut(s)	366, 539, 2809
BshTI	ACCGGT	1 cut(s)	369
BsiEI	CGRYCG	1 cut(s)	537
BsiHKAI	GWGCWC	3 cut(s)	2041, 3084, 3090
BsiSI	CCGG	5 cut(s)	370, 956, 1849, 2029, 2218
BslFI	GGGAC	4 cut(s)	18, 1221, 1628, 2109
BslI	CCNNNNNNNGG	7 cut(s)	876, 1183, 1730, 1731, 1820, 2362, 2704
BsmAI	GTCTC	5 cut(s)	335, 732, 1297, 2547, 2681
BsmBI	CGTCTC	1 cut(s)	335
BsmFI	GGGAC	4 cut(s)	18, 1221, 1628, 2109
BsmI	GAATGC	2 cut(s)	1556, 2024
BsnI	GGCC	5 cut(s)	1852, 2032, 2422, 2963, 3059
Bso31I	GGTCTC	1 cut(s)	2547
Bsp1286I	GDGCHC	6 cut(s)	340, 544, 2041, 2143, 3084, 3090
Bsp13I	TCCGGA	1 cut(s)	955
Bsp1407I	TGTACA	1 cut(s)	1615
Bsp19I	CCATGG	2 cut(s)	1020, 1329
BspACI	CCGC	5 cut(s)	262, 696, 1579, 2419, 2504
BspANI	GGCC	5 cut(s)	1852, 2032, 2422, 2963, 3059
BspCNI	CTCAG	6 cut(s)	39, 265, 345, 553, 884, 1807
BspEI	TCCGGA	1 cut(s)	955
BspFNI	CGCG	1 cut(s)	2951
BspHI	TCATGA	2 cut(s)	1099, 1200
BspLI	GGNNCC	7 cut(s)	368, 432, 541, 1308, 1644, 2811, 3135
BspMAI	CTGCAG	2 cut(s)	1315, 1804
BspOI	GCTAGC	1 cut(s)	3068
BspPI	GGATC	3 cut(s)	790, 2297, 2616
BspT107I	GGYRCC	3 cut(s)	366, 539, 2809
BspTNI	GGTCTC	1 cut(s)	2547
BsrFI	RCCGGY	2 cut(s)	369, 1848
BsrGI	TGTACA	1 cut(s)	1615
BsrI	ACTGG	2 cut(s)	1289, 1510
BssAI	RCCGGY	2 cut(s)	369, 1848
BssECI	CCNNGG	5 cut(s)	1020, 1329, 1729, 2332, 2964
BssNAI	GTATAC	1 cut(s)	1846
BssSI	CACGAG	2 cut(s)	921, 3083
BssT1I	CCWWGG	4 cut(s)	1020, 1329, 1729, 2332
Bst1107I	GTATAC	1 cut(s)	1846
Bst2BI	CACGAG	2 cut(s)	921, 3083
Bst2UI	CCWGG	5 cut(s)	155, 739, 2966, 3131, 3138
Bst4CI	ACNGT	8 cut(s)	221, 535, 1212, 1263, 1537, 2100, 2576, 2990
Bst6I	CTCTTC	2 cut(s)	48, 2553
BstAPI	GCANNNNNTGC	2 cut(s)	2045, 2293
BstAUI	TGTACA	1 cut(s)	1615
BstBAI	YACGTR	1 cut(s)	2669
BstC8I	GCNNGC	7 cut(s)	1040, 1170, 1581, 1929, 2004, 2472, 3066
BstDSI	CCRYGG	2 cut(s)	1020, 1329
BstENI	CCTNNNNNAGG	1 cut(s)	1818
BstFNI	CGCG	1 cut(s)	2951
BstHHI	GCGC	1 cut(s)	2953
BstMAI	GTCTC	5 cut(s)	335, 732, 1297, 2547, 2681
BstMCI	CGRYCG	1 cut(s)	537
BstNI	CCWGG	5 cut(s)	155, 739, 2966, 3131, 3138
BstNSI	RCATGY	5 cut(s)	617, 1042, 2045, 2319, 3049
BstSCI	CCNGG	5 cut(s)	153, 737, 2964, 3129, 3136
BstSFI	CTRYAG	5 cut(s)	1311, 1513, 1800, 1984, 3102
BstSLI	GKGCMC	3 cut(s)	340, 544, 2143
BstUI	CGCG	1 cut(s)	2951
BstV2I	GAAGAC	2 cut(s)	21, 2739
BstX2I	RGATCY	2 cut(s)	255, 2608
BstYI	RGATCY	2 cut(s)	255, 2608
BstZ17I	GTATAC	1 cut(s)	1846
BsuRI	GGCC	5 cut(s)	1852, 2032, 2422, 2963, 3059
BtgI	CCRYGG	2 cut(s)	1020, 1329
BtgZI	GCGATG	1 cut(s)	2848
BtsIMutI	CAGTG	4 cut(s)	226, 340, 894, 2995
Cac8I	GCNNGC	7 cut(s)	1040, 1170, 1581, 1929, 2004, 2472, 3066
CaiI	CAGNNNCTG	4 cut(s)	1061, 1841, 2098, 2965
CciI	TCATGA	2 cut(s)	1099, 1200
CfoI	GCGC	1 cut(s)	2953
Cfr10I	RCCGGY	2 cut(s)	369, 1848
Cfr13I	GGNCC	7 cut(s)	1642, 1769, 1954, 2031, 2220, 2962, 3127
CseI	GACGC	4 cut(s)	317, 374, 1232, 2285
Csp6I	GTAC	5 cut(s)	367, 683, 1616, 1997, 2313
CspAI	ACCGGT	1 cut(s)	369
CspCI	CAANNNNNGTGG	2 cut(s)	1957, 1992
CviQI	GTAC	5 cut(s)	367, 683, 1616, 1997, 2313
Eam1104I	CTCTTC	2 cut(s)	48, 2553
EarI	CTCTTC	2 cut(s)	48, 2553
Eco130I	CCWWGG	4 cut(s)	1020, 1329, 1729, 2332
Eco147I	AGGCCT	1 cut(s)	3059
Eco31I	GGTCTC	1 cut(s)	2547
Eco32I	GATATC	1 cut(s)	2281
Eco47I	GGWCC	5 cut(s)	1642, 1769, 1954, 2220, 3127
Eco57I	CTGAAG	6 cut(s)	15, 336, 926, 1611, 2521, 3143
EcoNI	CCTNNNNNAGG	1 cut(s)	1818
EcoO109I	RGGNCCY	2 cut(s)	1642, 2962
EcoRI	GAATTC	1 cut(s)	2941
EcoRII	CCWGG	5 cut(s)	153, 737, 2964, 3129, 3136
EcoRV	GATATC	1 cut(s)	2281
EcoT14I	CCWWGG	4 cut(s)	1020, 1329, 1729, 2332
EcoT22I	ATGCAT	1 cut(s)	2878
ErhI	CCWWGG	4 cut(s)	1020, 1329, 1729, 2332
Esp3I	CGTCTC	1 cut(s)	335
FalI	AAGNNNNNCTT	6 cut(s)	1329, 1361, 1665, 1697, 2115, 2147
FaqI	GGGAC	4 cut(s)	18, 1221, 1628, 2109
FauI	CCCGC	1 cut(s)	1572
FauNDI	CATATG	1 cut(s)	2700
FblI	GTMKAC	3 cut(s)	1192, 1845, 2080
FspBI	CTAG	7 cut(s)	602, 1626, 1910, 2592, 2604, 3011, 3065
GlaI	GCGC	1 cut(s)	2952
GsaI	CCCAGC	2 cut(s)	82, 1909
GsuI	CTGGAG	3 cut(s)	1527, 1777, 2264
HaeIII	GGCC	5 cut(s)	1852, 2032, 2422, 2963, 3059
HapII	CCGG	5 cut(s)	370, 956, 1849, 2029, 2218
HgaI	GACGC	4 cut(s)	317, 374, 1232, 2285
HhaI	GCGC	1 cut(s)	2953
Hin6I	GCGC	1 cut(s)	2951
HinP1I	GCGC	1 cut(s)	2951
HincII	GTYRAC	2 cut(s)	567, 2081
HindII	GTYRAC	2 cut(s)	567, 2081
HindIII	AAGCTT	1 cut(s)	1170
HinfI	GANTC	9 cut(s)	98, 275, 1349, 1412, 1573, 2366, 2486, 2507, 3148
HpaI	GTTAAC	1 cut(s)	567
HpaII	CCGG	5 cut(s)	370, 956, 1849, 2029, 2218
HphI	GGTGA	4 cut(s)	158, 647, 764, 914
Hpy166II	GTNNAC	9 cut(s)	347, 567, 1193, 1846, 1866, 1981, 2081, 2321, 3096
Hpy8I	GTNNAC	9 cut(s)	347, 567, 1193, 1846, 1866, 1981, 2081, 2321, 3096
HpyCH4III	ACNGT	8 cut(s)	221, 535, 1212, 1263, 1537, 2100, 2576, 2990
HpyCH4IV	ACGT	2 cut(s)	552, 2668
HpySE526I	ACGT	2 cut(s)	552, 2668
HspAI	GCGC	1 cut(s)	2951
Kpn2I	TCCGGA	1 cut(s)	955
KpnI	GGTACC	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	567
LmnI	GCTCC	4 cut(s)	166, 997, 1312, 1402
MaeI	CTAG	7 cut(s)	602, 1626, 1910, 2592, 2604, 3011, 3065
MaeII	ACGT	2 cut(s)	552, 2668
MaeIII	GTNAC	8 cut(s)	146, 376, 386, 752, 841, 1212, 1501, 1913
MboII	GAAGA	9 cut(s)	21, 65, 744, 807, 1140, 2570, 2744, 2759, 3110
MfeI	CAATTG	3 cut(s)	2288, 2646, 2681
MflI	RGATCY	2 cut(s)	255, 2608
MhlI	GDGCHC	6 cut(s)	340, 544, 2041, 2143, 3084, 3090
MlyI	GAGTC	1 cut(s)	2501
MmeI	TCCRAC	2 cut(s)	2918, 3025
Mph1103I	ATGCAT	1 cut(s)	2878
MroI	TCCGGA	1 cut(s)	955
MseI	TTAA	7 cut(s)	566, 656, 746, 1122, 2396, 2427, 2985
MspA1I	CMGCKG	3 cut(s)	698, 1058, 2021
MspI	CCGG	5 cut(s)	370, 956, 1849, 2029, 2218
MspR9I	CCNGG	5 cut(s)	155, 739, 2966, 3131, 3138
MunI	CAATTG	3 cut(s)	2288, 2646, 2681
Mva1269I	GAATGC	2 cut(s)	1556, 2024
MvaI	CCWGG	5 cut(s)	155, 739, 2966, 3131, 3138
MvnI	CGCG	1 cut(s)	2951
NcoI	CCATGG	2 cut(s)	1020, 1329
NdeI	CATATG	1 cut(s)	2700
NheI	GCTAGC	1 cut(s)	3064
NlaIV	GGNNCC	7 cut(s)	368, 432, 541, 1308, 1644, 2811, 3135
NmuCI	GTSAC	4 cut(s)	146, 386, 752, 841
NsiI	ATGCAT	1 cut(s)	2878
NspI	RCATGY	5 cut(s)	617, 1042, 2045, 2319, 3049
PaeI	GCATGC	1 cut(s)	1042
PagI	TCATGA	2 cut(s)	1099, 1200
PceI	AGGCCT	1 cut(s)	3059
PciI	ACATGT	1 cut(s)	2315
PctI	GAATGC	2 cut(s)	1556, 2024
PfeI	GAWTC	8 cut(s)	98, 275, 1349, 1412, 1573, 2366, 2486, 3148
PfoI	TCCNGGA	1 cut(s)	3136
PinAI	ACCGGT	1 cut(s)	369
PleI	GAGTC	1 cut(s)	2501
PpsI	GAGTC	1 cut(s)	2501
Ppu21I	YACGTR	1 cut(s)	2669
PpuMI	RGGWCCY	1 cut(s)	1642
PscI	ACATGT	1 cut(s)	2315
Psp5II	RGGWCCY	1 cut(s)	1642
Psp6I	CCWGG	5 cut(s)	153, 737, 2964, 3129, 3136
PspFI	CCCAGC	2 cut(s)	78, 1905
PspGI	CCWGG	5 cut(s)	153, 737, 2964, 3129, 3136
PspN4I	GGNNCC	7 cut(s)	368, 432, 541, 1308, 1644, 2811, 3135
PspPI	GGNCC	7 cut(s)	1642, 1769, 1954, 2031, 2220, 2962, 3127
PspPPI	RGGWCCY	1 cut(s)	1642
PstI	CTGCAG	2 cut(s)	1315, 1804
PstNI	CAGNNNCTG	4 cut(s)	1061, 1841, 2098, 2965
PsuI	RGATCY	2 cut(s)	255, 2608
PvuII	CAGCTG	2 cut(s)	1058, 2021
RsaI	GTAC	5 cut(s)	368, 684, 1617, 1998, 2314
RsaNI	GTAC	5 cut(s)	367, 683, 1616, 1997, 2313
SalI	GTCGAC	1 cut(s)	2079
SaqAI	TTAA	7 cut(s)	566, 656, 746, 1122, 2396, 2427, 2985
Sau96I	GGNCC	7 cut(s)	1642, 1769, 1954, 2031, 2220, 2962, 3127
SbfI	CCTGCAGG	1 cut(s)	1315
SchI	GAGTC	1 cut(s)	2501
ScrFI	CCNGG	5 cut(s)	155, 739, 2966, 3131, 3138
SdaI	CCTGCAGG	1 cut(s)	1315
SduI	GDGCHC	6 cut(s)	340, 544, 2041, 2143, 3084, 3090
SfcI	CTRYAG	5 cut(s)	1311, 1513, 1800, 1984, 3102
SinI	GGWCC	5 cut(s)	1642, 1769, 1954, 2220, 3127
SmlI	CTYRAG	5 cut(s)	1497, 2195, 2378, 2657, 3162
SmoI	CTYRAG	5 cut(s)	1497, 2195, 2378, 2657, 3162
SpeI	ACTAGT	1 cut(s)	2591
SphI	GCATGC	1 cut(s)	1042
Sse8387I	CCTGCAGG	1 cut(s)	1315
SseBI	AGGCCT	1 cut(s)	3059
SsiI	CCGC	5 cut(s)	262, 696, 1579, 2419, 2504
SspI	AATATT	1 cut(s)	2466
SspMI	CTAG	7 cut(s)	602, 1626, 1910, 2592, 2604, 3011, 3065
StuI	AGGCCT	1 cut(s)	3059
StyD4I	CCNGG	5 cut(s)	153, 737, 2964, 3129, 3136
StyI	CCWWGG	4 cut(s)	1020, 1329, 1729, 2332
TaaI	ACNGT	8 cut(s)	221, 535, 1212, 1263, 1537, 2100, 2576, 2990
TaiI	ACGT	2 cut(s)	555, 2671
TaqI	TCGA	4 cut(s)	730, 2080, 2283, 3054
TatI	WGTACW	3 cut(s)	1615, 1996, 2312
TauI	GCSGC	1 cut(s)	2422
TfiI	GAWTC	8 cut(s)	98, 275, 1349, 1412, 1573, 2366, 2486, 3148
Tru1I	TTAA	7 cut(s)	566, 656, 746, 1122, 2396, 2427, 2985
Tru9I	TTAA	7 cut(s)	566, 656, 746, 1122, 2396, 2427, 2985
TscAI	CASTG	4 cut(s)	226, 340, 894, 2995
TseFI	GTSAC	4 cut(s)	146, 386, 752, 841
Tsp45I	GTSAC	4 cut(s)	146, 386, 752, 841
TspGWI	ACGGA	2 cut(s)	1478, 2052
TspRI	CASTG	4 cut(s)	226, 340, 894, 2995
VpaK11BI	GGWCC	5 cut(s)	1642, 1769, 1954, 2220, 3127
XagI	CCTNNNNNAGG	1 cut(s)	1818
XapI	RAATTY	5 cut(s)	962, 1942, 2156, 2413, 2941
XceI	RCATGY	5 cut(s)	617, 1042, 2045, 2319, 3049
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1394, 1975, 2887
XmiI	GTMKAC	3 cut(s)	1192, 1845, 2080
XspI	CTAG	7 cut(s)	602, 1626, 1910, 2592, 2604, 3011, 3065
Zsp2I	ATGCAT	1 cut(s)	2878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.