Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008481

Physical Location & Seq

Genomic Coordinates Forward (+)

54204524 .. 54221510

Gene Structure 16987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG308300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2985 bp

ATGCTCCTTTCTCACTCTTTCTTCAATTCCTTCCAGATCTTGCGATTGTTCAGCGAATCTACCGAAAATATTGGTGTCTTAAAGGTTGATTTGGCTGAAGCAAAAAGGCGTCTTAGTTCCCGCAATAAACAACTGCATCAGTTATGGTACCGGTCGGTGACATTGCGCCACATAATCTCCCTATTAGATCAAATTGAGGGAATATCTAAGGTTCCTGCTCGTATAGAGAAGCTCATTTCCGAAAAGCAGTACTATGCCGCTGTTCAGTTTCATGTTCAGTCGATGTTGATGCTTGAACGTGAGGGGCTTCAGACGGTTGGTGCCCTTCAAGATGTTCGCTCTGAGTTAACAAAGTTGAGAGGAGTTCTGTTTTATAAAGTGCTGGAGGATCTACACGCTCATCTTTATAACAAGGGGGAATATAGCTCTGCTGCATTGAGCTTGCATGAAAGGGAAGATGAGGTACCAACCACCACAGCCGTTGTATTTTCGATGAATAATTCACAATCCCTGTCTCGAAGAACCAGGCTGTTAAAAGGTGATAATCAGCTTGGTATTCATGGAGATGGATCATATAGGGCAGGTTCTGTTGATGGAGGTTCTTCTGTTGATGGTCCTGACGAGGAGGGCACTGAATTGCATGATGAAGCTACCTCAGATGGGCATTCAACATCAGCTAGGGCCAATGGTGATGTCAAAATTATTCCTCGTCAAATGCCAACATGGCTTCAGTATTCCACTCCGGATGAATTTCTTGAAACAATCAAGAAAAGTGATGCGCCACTTCATGTCAAGTATTTACAGACTATGGTCGAGTGCCTTTGCATGCTTAGGAAAGTTGCAGCTGCTGGCGCTATGATATGCCAAAGACTGCGACCTACACTTCATGATGTTATCACATCCAAAATTAAAACTCATGCTGAACTAGTTAATTCTTCGAGGTCTGGCATCGGTCAGGCTGCCAGAACTGCTACTCCTGGTCTACATTTCATGAAGGGACAGTTAGAAAGTTATCAGTTGCCAAAACATAAGCGTCAGAATGGGATATCACTAGCTGGAACTCTATTGGCAGCGAGCCCTGTCTCGCCTGTGATGGCACCTGCAGGGAAAGCACAGGCTGCAGCAAAAGATCTTGTGAATTCTATTTTGGATGCTGTTGTTCGGATATTTGAGAACCATGTTGTTGTTGGGGAGCTTTTAGAATTAAAGTCGTCTCAACAAGCAGACATGAATACACCAAAATCAATGCCAACAGACATAAATATTAATCCTGATTCTGAATCATCTCAAGTTACTGGAGGCTACAGCATTGGTTTTTCCTTAACAGTATTACAGAGTGAATGCCAGCAACTTATTTGTGAGATACTGCGGGCAACTCCTGAAGCTGCATCTGCAGATGCTGCTGTACAAACAGCTAGATTTGCGAGCAAGGCCCCTTCCAAAGATAAGAGGGACAGTTCAGAGGAGGGTCTTACCTTTGCTTTTCGCTTCACAGATGCTACTATTTCCATTCCCAACCAAGGGGTTGATCTCATTCGTCAAGGCTGGAGTAGAAAGGGCCCAAATGTATTACAAGAAGGTTATGGGTCGGCAGCTGTCTTGCCTGAGCAAGGCATATATCTAGCAGCATCTATATACCGGCCTGTTATTCAGTTTACAGATAAGGTCTCTTCTATGCTTCCAAAAAAGTATTCCCAGCTAAGTAATGATGGGTTGCTGGCTTTTGTGGAGAACTTTGTGAAGGACCATTTCTTACCAACGATGTTTGTAGACTACAGAAAAGGCGTACAACAAGCTATATCAAGTCCAGCTTCATTCCGACCGAGAGCTCATGCTGCTGCATCTTATACTCCTTCAATTGAGAAGGGTCGTCCCGTCTTACAGGGACTTCTGGCAATAGATTTTCTAGCAAAAGAGGTGCTTGGTTGGGCACAAGCTATGCCTAAATTTGCTGGTGACCTTGCGAAGTATGTTCAAACTTTTCTGGAGCGAACCTATGAAAGATGCCGGACCTCATACATGGAGGCTGTTCTGGAGAAGCAGAGTTACATGCTCATTGGCAGACATGATATCGAGCAATTGATGCGACTTGATCCTGCAAGTGCATATTTACCAAATGCATTTGGGCAGTCAAACATGGAAACCCATGCTTCGGATGCTGAAAATTTCGAGGTTGAACTAGAACTGAGTGAGTTACTGTTGAATTTGCGGCCTATTAAGCAGGATAATCTGATTCGTGATGACAACAAGCTTATATTGCTGGCTTCCCTCAGTGATTCATTGGAGTATGTTGCAGAGTCTATTGAAAGGCTTGGAGAGACTACATTTAACGCTCCAAATCAAGTAGAAGATAATGGCAAGAACCGTCACCGACGAACAAGTAGTGCTCCTGCTAGGGATCTGGCATCTTTTGCAGATGAGTACAGAAAATTGGCAATTGACTGCCTTAAGGTTTTACGTGTTGAGATGCAATTGGAGACAATTTTCCATATGCAGGAAATGACAAACAGGGAATATATGGAAGACCAGGATGCTGAAGAGCCAGATGACTTCATTATTTCACTGACTGCACAGATAACGCGTAGGGATGAGGAGATGGCACCTTTTGTTTCGGCGCTGAAGCGGAATTACATATTTGGTGGGATTTGTAGCGTTGCAGCAAATGCATCCATCAGGGCTTTGGCTGATATGAAATGCATTAATCTTTTTGGGGTCCAGCAGATATGTCGGAATTCAATTGCACTTGAACAGGCACTGGCTGCTATCCCAGCAATTGACAGTGAAGGTGTACAACAGAGACTTGATCATGTCCGAACTTACTATGAGCTTCTAAACATGCCATTTGAGGCCGTGCTTGCCTTCATAACGGAGCATGAGCACTTGTTTACAGCCGCCGAGTATGCAAATCTTCTAAAGGTCCAGGTACCTGGTAGGGAGATTCCAGCAGATGCAAAAGATCGTGTATCGGAGATTCTATCCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0003006 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006605 GO:0006612 GO:0006810 GO:0006886 GO:0006887 GO:0006892 GO:0006893 GO:0006903 GO:0007154 GO:0007275 GO:0008037 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009506 GO:0009791 GO:0009856 GO:0009875 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0022414 GO:0030054 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043230 GO:0044237 GO:0044249 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048316 GO:0048354 GO:0048359 GO:0048544 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051704 GO:0055044 GO:0060321 GO:0061458 GO:0070062 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090150 GO:0098876 GO:0099023 GO:0099568 GO:1903561

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sec8_exocyst

Protein Analysis

994

Amino Acids

110.58

Weight (kDa)

5.84

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec8_N	PF04048	12 - 78	5.2e-15	Exocyst complex component Sec8 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008481)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10380 AT3G10380
fragaria_vesca	FvH4_7g18760 FvH4_7g18760
malus_domestica	MD01G1103100.v1.1 MD07G1169800.v1.1
prunus_persica	Prupe.2G208700_v2.0.a1 Prupe.2G208700_v2.0.a1
pyrus_communis	pycom01g12960 pycom07g16370
rosa_chinensis	RchiOBHm_Chr1g0362571
rosa_laevigata	RLG00000027638
rosa_multiflora	Rmu_sc0005725.1_g000007
rosa_roxburghii	Rroxscaffold_4G00293960
rosa_rugosa	Rorug01G0299600 Rorug01G0299600 Rorug01G0299600 Rorug01G0299700
rosa_samantha	Rh1AG308300 Rh1BG271600 Rh1CG289200 Rh1DG301900
rosa_wichuraiana	Rw1G027370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	375, 408
AarI	CACCTGC	1 cut(s)	1108
Acc36I	ACCTGC	2 cut(s)	572, 1108
Acc65I	GGTACC	3 cut(s)	147, 463, 2923
AccB1I	GGYRCC	6 cut(s)	147, 320, 463, 1096, 2599, 2923
AccI	GTMKAC	2 cut(s)	982, 1770
AccII	CGCG	1 cut(s)	2581
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	6 cut(s)	121, 258, 1369, 2209, 2623, 2892
AclWI	GGATC	4 cut(s)	396, 577, 2087, 2406
AcsI	RAATTY	6 cut(s)	749, 1138, 1946, 2164, 2203, 2731
AcuI	CTGAAG	6 cut(s)	117, 293, 713, 1401, 2556, 2639
AcyI	GRCGYC	1 cut(s)	109
AfaI	GTAC	8 cut(s)	149, 251, 465, 1407, 1788, 2423, 2790, 2925
AfiI	CCNNNNNNNGG	6 cut(s)	660, 1520, 1521, 1610, 2152, 2494
AflII	CTTAAG	1 cut(s)	2447
AflIII	ACRYGT	2 cut(s)	2458, 2579
AgeI	ACCGGT	1 cut(s)	150
AhlI	ACTAGT	1 cut(s)	925
AjnI	CCWGG	5 cut(s)	524, 976, 2526, 2919, 2926
AjuI	GAANNNNNNNTTGG	4 cut(s)	1130, 1162, 1675, 1707
AloI	GAACNNNNNNTCC	2 cut(s)	958, 990
Alw21I	GWGCWC	3 cut(s)	1831, 2389, 2880
Alw26I	GTCTC	7 cut(s)	519, 1087, 1218, 1672, 2312, 2471, 2791
AlwI	GGATC	4 cut(s)	396, 577, 2087, 2406
AlwNI	CAGNNNCTG	4 cut(s)	587, 848, 1400, 2755
Aor13HI	TCCGGA	1 cut(s)	742
AoxI	GGCC	6 cut(s)	681, 1431, 1558, 1640, 2210, 2847
ApaI	GGGCCC	1 cut(s)	1562
ApoI	RAATTY	6 cut(s)	749, 1138, 1946, 2164, 2203, 2731
AseI	ATTAAT	2 cut(s)	1266, 2700
AsiGI	ACCGGT	1 cut(s)	150
Asp718I	GGTACC	3 cut(s)	147, 463, 2923
AspLEI	GCGC	4 cut(s)	168, 781, 854, 2617
AspS9I	GGNCC	9 cut(s)	614, 681, 1432, 1558, 1559, 1744, 2010, 2713, 2917
AsuHPI	GGTGA	5 cut(s)	169, 551, 701, 1967, 2360
AvaII	GGWCC	5 cut(s)	614, 1744, 2010, 2713, 2917
BaeGI	GKGCMC	4 cut(s)	325, 632, 1562, 1933
BanI	GGYRCC	6 cut(s)	147, 320, 463, 1096, 2599, 2923
BanII	GRGCYC	3 cut(s)	1079, 1562, 1831
BarI	GAAGNNNNNNTAC	6 cut(s)	447, 479, 2030, 2062, 2612, 2644
BbsI	GAAGAC	1 cut(s)	2529
Bbv12I	GWGCWC	3 cut(s)	1831, 2389, 2880
BccI	CCATC	8 cut(s)	560, 587, 605, 653, 1087, 1703, 2590, 2678
BceAI	ACGGC	2 cut(s)	464, 2834
BcgI	CGANNNNNNTGC	4 cut(s)	271, 305, 2708, 2742
BciT130I	CCWGG	5 cut(s)	526, 978, 2528, 2921, 2928
BclI	TGATCA	1 cut(s)	2803
BcoDI	GTCTC	7 cut(s)	519, 1087, 1218, 1672, 2312, 2471, 2791
BcuI	ACTAGT	1 cut(s)	925
BfaI	CTAG	8 cut(s)	678, 926, 1052, 1416, 1622, 1907, 2180, 2394
BfmI	CTRYAG	5 cut(s)	1101, 1119, 1303, 1392, 1774
BfoI	RGCGCY	2 cut(s)	855, 2618
BfrI	CTTAAG	1 cut(s)	2447
BfuAI	ACCTGC	2 cut(s)	572, 1108
BglI	GCCNNNNNGGC	1 cut(s)	724
BglII	AGATCT	2 cut(s)	36, 1129
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	5 cut(s)	526, 978, 2528, 2921, 2928
Bme18I	GGWCC	5 cut(s)	614, 1744, 2010, 2713, 2917
BmgT120I	GGNCC	9 cut(s)	614, 681, 1432, 1558, 1559, 1744, 2010, 2713, 2917
BmrFI	CCNGG	5 cut(s)	526, 978, 2528, 2921, 2928
BoxI	GACNNNNGTC	1 cut(s)	809
BpiI	GAAGAC	1 cut(s)	2529
BpmI	CTGGAG	5 cut(s)	404, 1317, 1567, 2006, 2054
Bpu10I	CCTNAGC	2 cut(s)	830, 1605
BpuEI	CTTGAG	1 cut(s)	1272
BsaAI	YACGTR	1 cut(s)	2459
BsaHI	GRCGYC	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	1672
BsaJI	CCNNGG	1 cut(s)	1519
BsaWI	WCCGGW	2 cut(s)	150, 742
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 958, 988
Bsc4I	CCNNNNNNNGG	6 cut(s)	660, 1520, 1521, 1610, 2152, 2494
Bse118I	RCCGGY	2 cut(s)	150, 1638
Bse1I	ACTGG	2 cut(s)	1300, 2760
Bse3DI	GCAATG	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	5 cut(s)	526, 978, 2528, 2921, 2928
BseDI	CCNNGG	1 cut(s)	1519
BseGI	GGATG	7 cut(s)	751, 899, 1156, 2161, 2536, 2593, 2666
BseLI	CCNNNNNNNGG	6 cut(s)	660, 1520, 1521, 1610, 2152, 2494
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	5 cut(s)	333, 669, 1596, 2177, 2284
BseNI	ACTGG	2 cut(s)	1300, 2760
BseRI	GAGGAG	4 cut(s)	375, 638, 1478, 2606
BseSI	GKGCMC	4 cut(s)	325, 632, 1562, 1933
BseYI	CCCAGC	2 cut(s)	1695, 2767
BsgI	GTGCAG	1 cut(s)	2553
Bsh1236I	CGCG	1 cut(s)	2581
Bsh1285I	CGRYCG	2 cut(s)	155, 1823
BshFI	GGCC	6 cut(s)	683, 1433, 1560, 1642, 2212, 2849
BshNI	GGYRCC	6 cut(s)	147, 320, 463, 1096, 2599, 2923
BshTI	ACCGGT	1 cut(s)	150
BsiEI	CGRYCG	2 cut(s)	155, 1823
BsiHKAI	GWGCWC	3 cut(s)	1831, 2389, 2880
BsiSI	CCGG	4 cut(s)	151, 743, 1639, 2008
BslFI	GGGAC	4 cut(s)	1011, 1466, 1857, 1899
BslI	CCNNNNNNNGG	6 cut(s)	660, 1520, 1521, 1610, 2152, 2494
BsmAI	GTCTC	7 cut(s)	519, 1087, 1218, 1672, 2312, 2471, 2791
BsmBI	CGTCTC	1 cut(s)	1218
BsmFI	GGGAC	4 cut(s)	1011, 1466, 1857, 1899
BsmI	GAATGC	2 cut(s)	664, 1346
BsnI	GGCC	6 cut(s)	683, 1433, 1560, 1642, 2212, 2849
Bso31I	GGTCTC	1 cut(s)	1672
Bsp120I	GGGCCC	1 cut(s)	1558
Bsp1286I	GDGCHC	8 cut(s)	325, 632, 1079, 1562, 1831, 1933, 2389, 2880
Bsp13I	TCCGGA	1 cut(s)	742
Bsp1407I	TGTACA	2 cut(s)	1405, 2788
BspACI	CCGC	6 cut(s)	121, 258, 1369, 2209, 2623, 2892
BspANI	GGCC	6 cut(s)	683, 1433, 1560, 1642, 2212, 2849
BspCNI	CTCAG	5 cut(s)	334, 668, 1597, 2178, 2283
BspEI	TCCGGA	1 cut(s)	742
BspFNI	CGCG	1 cut(s)	2581
BspHI	TCATGA	2 cut(s)	886, 990
BspMAI	CTGCAG	3 cut(s)	1105, 1123, 1396
BspMI	ACCTGC	2 cut(s)	572, 1108
BspPI	GGATC	4 cut(s)	396, 577, 2087, 2406
BspQI	GCTCTTC	1 cut(s)	2532
BspT107I	GGYRCC	6 cut(s)	147, 320, 463, 1096, 2599, 2923
BspTI	CTTAAG	1 cut(s)	2447
BspTNI	GGTCTC	1 cut(s)	1672
BsrDI	GCAATG	1 cut(s)	161
BsrFI	RCCGGY	2 cut(s)	150, 1638
BsrGI	TGTACA	2 cut(s)	1405, 2788
BsrI	ACTGG	2 cut(s)	1300, 2760
BssAI	RCCGGY	2 cut(s)	150, 1638
BssECI	CCNNGG	1 cut(s)	1519
BssNI	GRCGYC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	1519
Bst2UI	CCWGG	5 cut(s)	526, 978, 2528, 2921, 2928
Bst4CI	ACNGT	7 cut(s)	316, 1002, 1327, 1457, 2199, 2366, 2780
Bst6I	CTCTTC	2 cut(s)	1675, 2532
BstACI	GRCGYC	1 cut(s)	109
BstAFI	CTTAAG	1 cut(s)	2447
BstAPI	GCANNNNNTGC	6 cut(s)	1118, 1400, 2083, 2411, 2663, 2759
BstAUI	TGTACA	2 cut(s)	1405, 2788
BstBAI	YACGTR	1 cut(s)	2459
BstDEI	CTNAG	9 cut(s)	113, 207, 342, 655, 830, 1605, 1700, 2186, 2270
BstEII	GGTNACC	1 cut(s)	1955
BstENI	CCTNNNNNAGG	1 cut(s)	1608
BstF5I	GGATG	7 cut(s)	751, 899, 1156, 2161, 2536, 2593, 2666
BstFNI	CGCG	1 cut(s)	2581
BstH2I	RGCGCY	2 cut(s)	855, 2618
BstHHI	GCGC	4 cut(s)	168, 781, 854, 2617
BstMAI	GTCTC	7 cut(s)	519, 1087, 1218, 1672, 2312, 2471, 2791
BstMCI	CGRYCG	2 cut(s)	155, 1823
BstNI	CCWGG	5 cut(s)	526, 978, 2528, 2921, 2928
BstNSI	RCATGY	3 cut(s)	829, 2053, 2839
BstPAI	GACNNNNGTC	1 cut(s)	809
BstPI	GGTNACC	1 cut(s)	1955
BstSCI	CCNGG	5 cut(s)	524, 976, 2526, 2919, 2926
BstSFI	CTRYAG	5 cut(s)	1101, 1119, 1303, 1392, 1774
BstSLI	GKGCMC	4 cut(s)	325, 632, 1562, 1933
BstUI	CGCG	1 cut(s)	2581
BstV2I	GAAGAC	1 cut(s)	2529
BstX2I	RGATCY	4 cut(s)	36, 388, 1129, 2398
BstXI	CCANNNNNNTGG	1 cut(s)	2927
BstYI	RGATCY	4 cut(s)	36, 388, 1129, 2398
BsuRI	GGCC	6 cut(s)	683, 1433, 1560, 1642, 2212, 2849
BtsCI	GGATG	7 cut(s)	751, 899, 1156, 2161, 2536, 2593, 2666
BtsIMutI	CAGTG	5 cut(s)	630, 2278, 2561, 2753, 2785
BveI	ACCTGC	2 cut(s)	572, 1108
CaiI	CAGNNNCTG	4 cut(s)	587, 848, 1400, 2755
CciI	TCATGA	2 cut(s)	886, 990
CfoI	GCGC	4 cut(s)	168, 781, 854, 2617
Cfr10I	RCCGGY	2 cut(s)	150, 1638
Cfr13I	GGNCC	9 cut(s)	614, 681, 1432, 1558, 1559, 1744, 2010, 2713, 2917
CseI	GACGC	2 cut(s)	98, 1022
CsiI	ACCWGGT	1 cut(s)	2926
Csp6I	GTAC	8 cut(s)	148, 250, 464, 1406, 1787, 2422, 2789, 2924
CspAI	ACCGGT	1 cut(s)	150
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviQI	GTAC	8 cut(s)	148, 250, 464, 1406, 1787, 2422, 2789, 2924
DdeI	CTNAG	9 cut(s)	113, 207, 342, 655, 830, 1605, 1700, 2186, 2270
Eam1104I	CTCTTC	2 cut(s)	1675, 2532
EarI	CTCTTC	2 cut(s)	1675, 2532
Ecl136II	GAGCTC	1 cut(s)	1829
Eco130I	CCWWGG	1 cut(s)	1519
Eco24I	GRGCYC	3 cut(s)	1079, 1562, 1831
Eco31I	GGTCTC	1 cut(s)	1672
Eco32I	GATATC	2 cut(s)	1047, 2071
Eco47I	GGWCC	5 cut(s)	614, 1744, 2010, 2713, 2917
Eco53kI	GAGCTC	1 cut(s)	1829
Eco57I	CTGAAG	6 cut(s)	117, 293, 713, 1401, 2556, 2639
Eco91I	GGTNACC	1 cut(s)	1955
EcoICRI	GAGCTC	1 cut(s)	1829
EcoNI	CCTNNNNNAGG	1 cut(s)	1608
EcoO109I	RGGNCCY	2 cut(s)	1432, 1558
EcoO65I	GGTNACC	1 cut(s)	1955
EcoRI	GAATTC	2 cut(s)	1138, 2731
EcoRII	CCWGG	5 cut(s)	524, 976, 2526, 2919, 2926
EcoRV	GATATC	2 cut(s)	1047, 2071
EcoT14I	CCWWGG	1 cut(s)	1519
EcoT22I	ATGCAT	3 cut(s)	2122, 2668, 2699
EcoT38I	GRGCYC	3 cut(s)	1079, 1562, 1831
ErhI	CCWWGG	1 cut(s)	1519
Esp3I	CGTCTC	1 cut(s)	1218
FalI	AAGNNNNNCTT	4 cut(s)	1795, 1827, 1905, 1937
FaqI	GGGAC	4 cut(s)	1011, 1466, 1857, 1899
FauI	CCCGC	2 cut(s)	128, 1362
FauNDI	CATATG	1 cut(s)	2490
FbaI	TGATCA	1 cut(s)	2803
FblI	GTMKAC	2 cut(s)	982, 1770
FokI	GGATG	7 cut(s)	758, 886, 1163, 2168, 2543, 2600, 2653
FriOI	GRGCYC	3 cut(s)	1079, 1562, 1831
FspBI	CTAG	8 cut(s)	678, 926, 1052, 1416, 1622, 1907, 2180, 2394
GlaI	GCGC	4 cut(s)	167, 780, 853, 2616
GsaI	CCCAGC	2 cut(s)	1699, 2771
GsuI	CTGGAG	5 cut(s)	404, 1317, 1567, 2006, 2054
HaeII	RGCGCY	2 cut(s)	855, 2618
HaeIII	GGCC	6 cut(s)	683, 1433, 1560, 1642, 2212, 2849
HapII	CCGG	4 cut(s)	151, 743, 1639, 2008
HgaI	GACGC	2 cut(s)	98, 1022
HhaI	GCGC	4 cut(s)	168, 781, 854, 2617
Hin1I	GRCGYC	1 cut(s)	109
Hin6I	GCGC	4 cut(s)	166, 779, 852, 2615
HinP1I	GCGC	4 cut(s)	166, 779, 852, 2615
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	2249
HinfI	GANTC	8 cut(s)	56, 1274, 1280, 2233, 2276, 2297, 2938, 2971
HpaI	GTTAAC	1 cut(s)	348
HpaII	CCGG	4 cut(s)	151, 743, 1639, 2008
HphI	GGTGA	5 cut(s)	169, 551, 701, 1967, 2360
Hpy166II	GTNNAC	6 cut(s)	348, 983, 1656, 1771, 2789, 2886
Hpy8I	GTNNAC	6 cut(s)	348, 983, 1656, 1771, 2789, 2886
Hpy99I	CGWCG	1 cut(s)	2376
HpyCH4III	ACNGT	7 cut(s)	316, 1002, 1327, 1457, 2199, 2366, 2780
HpyCH4IV	ACGT	2 cut(s)	298, 2458
HpyF3I	CTNAG	9 cut(s)	113, 207, 342, 655, 830, 1605, 1700, 2186, 2270
HpySE526I	ACGT	2 cut(s)	298, 2458
Hsp92I	GRCGYC	1 cut(s)	109
HspAI	GCGC	4 cut(s)	166, 779, 852, 2615
Kpn2I	TCCGGA	1 cut(s)	742
KpnI	GGTACC	3 cut(s)	151, 467, 2927
Ksp22I	TGATCA	1 cut(s)	2803
KspAI	GTTAAC	1 cut(s)	348
LguI	GCTCTTC	1 cut(s)	2532
LmnI	GCTCC	6 cut(s)	9, 1192, 1987, 2338, 2392, 2869
MabI	ACCWGGT	1 cut(s)	2926
MaeI	CTAG	8 cut(s)	678, 926, 1052, 1416, 1622, 1907, 2180, 2394
MaeII	ACGT	2 cut(s)	298, 2458
MaeIII	GTNAC	6 cut(s)	157, 1291, 1955, 2045, 2193, 2366
MfeI	CAATTG	6 cut(s)	1857, 2078, 2436, 2471, 2736, 2772
MflI	RGATCY	4 cut(s)	36, 388, 1129, 2398
MhlI	GDGCHC	8 cut(s)	325, 632, 1079, 1562, 1831, 1933, 2389, 2880
MluI	ACGCGT	1 cut(s)	2579
MlyI	GAGTC	1 cut(s)	2306
MmeI	TCCRAC	2 cut(s)	1843, 2708
Mph1103I	ATGCAT	3 cut(s)	2122, 2668, 2699
MroI	TCCGGA	1 cut(s)	742
MslI	CAYNNNNRTG	1 cut(s)	564
MspA1I	CMGCKG	3 cut(s)	260, 845, 1595
MspCI	CTTAAG	1 cut(s)	2447
MspI	CCGG	4 cut(s)	151, 743, 1639, 2008
MspR9I	CCNGG	5 cut(s)	526, 978, 2528, 2921, 2928
MunI	CAATTG	6 cut(s)	1857, 2078, 2436, 2471, 2736, 2772
Mva1269I	GAATGC	2 cut(s)	664, 1346
MvaI	CCWGG	5 cut(s)	526, 978, 2528, 2921, 2928
MvnI	CGCG	1 cut(s)	2581
NdeI	CATATG	1 cut(s)	2490
NmeAIII	GCCGAG	1 cut(s)	2920
NmuCI	GTSAC	3 cut(s)	157, 1955, 2366
NsiI	ATGCAT	3 cut(s)	2122, 2668, 2699
NspI	RCATGY	3 cut(s)	829, 2053, 2839
PaeI	GCATGC	1 cut(s)	829
PagI	TCATGA	2 cut(s)	886, 990
PaqCI	CACCTGC	1 cut(s)	1108
PciSI	GCTCTTC	1 cut(s)	2532
PctI	GAATGC	2 cut(s)	664, 1346
PfeI	GAWTC	7 cut(s)	56, 1274, 1280, 2233, 2276, 2938, 2971
PinAI	ACCGGT	1 cut(s)	150
PleI	GAGTC	1 cut(s)	2305
PpsI	GAGTC	1 cut(s)	2305
Ppu21I	YACGTR	1 cut(s)	2459
PshAI	GACNNNNGTC	1 cut(s)	809
PshBI	ATTAAT	2 cut(s)	1266, 2700
PsiI	TTATAA	2 cut(s)	375, 408
Psp124BI	GAGCTC	1 cut(s)	1831
Psp6I	CCWGG	5 cut(s)	524, 976, 2526, 2919, 2926
PspEI	GGTNACC	1 cut(s)	1955
PspFI	CCCAGC	2 cut(s)	1695, 2767
PspGI	CCWGG	5 cut(s)	524, 976, 2526, 2919, 2926
PspOMI	GGGCCC	1 cut(s)	1558
PspPI	GGNCC	9 cut(s)	614, 681, 1432, 1558, 1559, 1744, 2010, 2713, 2917
PstI	CTGCAG	3 cut(s)	1105, 1123, 1396
PstNI	CAGNNNCTG	4 cut(s)	587, 848, 1400, 2755
PsuI	RGATCY	4 cut(s)	36, 388, 1129, 2398
PvuII	CAGCTG	2 cut(s)	845, 1595
RsaI	GTAC	8 cut(s)	149, 251, 465, 1407, 1788, 2423, 2790, 2925
RsaNI	GTAC	8 cut(s)	148, 250, 464, 1406, 1787, 2422, 2789, 2924
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	1831
SapI	GCTCTTC	1 cut(s)	2532
Sau96I	GGNCC	9 cut(s)	614, 681, 1432, 1558, 1559, 1744, 2010, 2713, 2917
SbfI	CCTGCAGG	1 cut(s)	1105
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	1 cut(s)	2306
ScrFI	CCNGG	5 cut(s)	526, 978, 2528, 2921, 2928
SdaI	CCTGCAGG	1 cut(s)	1105
SduI	GDGCHC	8 cut(s)	325, 632, 1079, 1562, 1831, 1933, 2389, 2880
SexAI	ACCWGGT	1 cut(s)	2926
SfcI	CTRYAG	5 cut(s)	1101, 1119, 1303, 1392, 1774
SinI	GGWCC	5 cut(s)	614, 1744, 2010, 2713, 2917
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	1287, 2447
SmoI	CTYRAG	2 cut(s)	1287, 2447
SpeI	ACTAGT	1 cut(s)	925
SphI	GCATGC	1 cut(s)	829
Sse8387I	CCTGCAGG	1 cut(s)	1105
SsiI	CCGC	6 cut(s)	121, 258, 1369, 2209, 2623, 2892
SspI	AATATT	2 cut(s)	70, 1264
SspMI	CTAG	8 cut(s)	678, 926, 1052, 1416, 1622, 1907, 2180, 2394
SstI	GAGCTC	1 cut(s)	1831
StyD4I	CCNGG	5 cut(s)	524, 976, 2526, 2919, 2926
StyI	CCWWGG	1 cut(s)	1519
TaaI	ACNGT	7 cut(s)	316, 1002, 1327, 1457, 2199, 2366, 2780
TaiI	ACGT	2 cut(s)	301, 2461
TaqI	TCGA	7 cut(s)	281, 491, 517, 813, 938, 2073, 2169
TaqII	GACCGA	2 cut(s)	941, 1837
TatI	WGTACW	4 cut(s)	249, 1405, 2421, 2788
TauI	GCSGC	3 cut(s)	260, 2212, 2894
TfiI	GAWTC	7 cut(s)	56, 1274, 1280, 2233, 2276, 2938, 2971
TscAI	CASTG	5 cut(s)	637, 2278, 2568, 2760, 2785
TseFI	GTSAC	3 cut(s)	157, 1955, 2366
Tsp45I	GTSAC	3 cut(s)	157, 1955, 2366
TspGWI	ACGGA	1 cut(s)	2882
TspRI	CASTG	5 cut(s)	637, 2278, 2568, 2760, 2785
Vha464I	CTTAAG	1 cut(s)	2447
VpaK11BI	GGWCC	5 cut(s)	614, 1744, 2010, 2713, 2917
VspI	ATTAAT	2 cut(s)	1266, 2700
XagI	CCTNNNNNAGG	1 cut(s)	1608
XapI	RAATTY	6 cut(s)	749, 1138, 1946, 2164, 2203, 2731
XceI	RCATGY	3 cut(s)	829, 2053, 2839
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1184, 2677
XmiI	GTMKAC	2 cut(s)	982, 1770
XspI	CTAG	8 cut(s)	678, 926, 1052, 1416, 1622, 1907, 2180, 2394
ZrmI	AGTACT	1 cut(s)	251
Zsp2I	ATGCAT	3 cut(s)	2122, 2668, 2699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.