Belongs to the mitochondrial carrier (TC 2.A.29) family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G35800 |
| fragaria_vesca | FvH4_7g20100 |
| malus_domestica | MD01G1130600.v1.1 MD07G1178700.v1.1 |
| prunus_persica | Prupe.2G217800_v2.0.a1 |
| pyrus_communis | pycom01g13940 pycom07g17230 pycom07g17240 |
| rosa_chinensis | RchiOBHm_Chr1g0364061 |
| rosa_laevigata | RLG00000027520 |
| rosa_multiflora | Rmu_sc0000071.1_g000027 Rmu_sc0009677.1_g000022 |
| rosa_roxburghii | Rroxscaffold_4G00292680 |
| rosa_rugosa | Rorug01G0313100 Rorug01G0313200 Rorug01G0313200 |
| rosa_samantha | Rh1DG315200 |
| rosa_wichuraiana | Rw1G028420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1273 |
| Acc36I | ACCTGC | 1 cut(s) | 1624 |
| AccB1I | GGYRCC | 2 cut(s) | 2066, 2378 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1763 |
| AccBSI | CCGCTC | 2 cut(s) | 73, 2261 |
| AccI | GTMKAC | 1 cut(s) | 2272 |
| AclI | AACGTT | 1 cut(s) | 1730 |
| AclWI | GGATC | 3 cut(s) | 1002, 1547, 2166 |
| AcoI | YGGCCR | 2 cut(s) | 96, 2469 |
| AcsI | RAATTY | 4 cut(s) | 152, 310, 1513, 1950 |
| AcuI | CTGAAG | 2 cut(s) | 662, 1158 |
| AcyI | GRCGYC | 1 cut(s) | 1270 |
| AfaI | GTAC | 4 cut(s) | 1053, 1264, 1629, 1713 |
| AfeI | AGCGCT | 1 cut(s) | 2346 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 314, 1061, 1763 |
| AflII | CTTAAG | 1 cut(s) | 2042 |
| AflIII | ACRYGT | 1 cut(s) | 622 |
| AjnI | CCWGG | 2 cut(s) | 454, 2351 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 248, 280, 627, 659 |
| Alw21I | GWGCWC | 1 cut(s) | 1666 |
| AlwI | GGATC | 3 cut(s) | 1002, 1547, 2166 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1136 |
| Ama87I | CYCGRG | 1 cut(s) | 1707 |
| Aor51HI | AGCGCT | 1 cut(s) | 2346 |
| AoxI | GGCC | 7 cut(s) | 96, 124, 1404, 1987, 2295, 2415, 2469 |
| ApeKI | GCWGC | 6 cut(s) | 146, 1577, 1972, 2135, 2210, 2449 |
| ApoI | RAATTY | 4 cut(s) | 152, 310, 1513, 1950 |
| AspLEI | GCGC | 1 cut(s) | 2347 |
| AspS9I | GGNCC | 4 cut(s) | 125, 458, 484, 2321 |
| AsuC2I | CCSGG | 2 cut(s) | 926, 1889 |
| AsuHPI | GGTGA | 8 cut(s) | 188, 236, 911, 939, 1024, 1180, 1487, 2212 |
| AsuII | TTCGAA | 1 cut(s) | 88 |
| AsuNHI | GCTAGC | 1 cut(s) | 962 |
| AvaI | CYCGRG | 1 cut(s) | 1707 |
| AvaII | GGWCC | 3 cut(s) | 458, 484, 2321 |
| BaeGI | GKGCMC | 1 cut(s) | 2024 |
| BanI | GGYRCC | 2 cut(s) | 2066, 2378 |
| BanII | GRGCYC | 1 cut(s) | 1790 |
| BauI | CACGAG | 1 cut(s) | 2315 |
| BbsI | GAAGAC | 1 cut(s) | 1446 |
| Bbv12I | GWGCWC | 1 cut(s) | 1666 |
| BbvCI | CCTCAGC | 1 cut(s) | 1056 |
| BbvI | GCAGC | 6 cut(s) | 133, 1564, 1984, 2122, 2222, 2461 |
| BccI | CCATC | 6 cut(s) | 229, 374, 865, 1172, 1312, 2030 |
| BceAI | ACGGC | 3 cut(s) | 584, 2064, 2327 |
| BciT130I | CCWGG | 2 cut(s) | 456, 2353 |
| BclI | TGATCA | 3 cut(s) | 658, 688, 760 |
| BcnI | CCSGG | 2 cut(s) | 926, 1889 |
| BfaI | CTAG | 6 cut(s) | 632, 840, 963, 1266, 2162, 2409 |
| BfmI | CTRYAG | 3 cut(s) | 1385, 1908, 1921 |
| BfoI | RGCGCY | 1 cut(s) | 2348 |
| BfrI | CTTAAG | 1 cut(s) | 2042 |
| BfuAI | ACCTGC | 1 cut(s) | 1624 |
| BglII | AGATCT | 2 cut(s) | 1198, 1634 |
| BisI | GCNGC | 9 cut(s) | 71, 96, 147, 740, 1578, 1973, 2136, 2211, 2450 |
| BlsI | GCNGC | 9 cut(s) | 72, 97, 148, 741, 1579, 1974, 2137, 2212, 2451 |
| Bme1390I | CCNGG | 4 cut(s) | 456, 926, 1889, 2353 |
| Bme18I | GGWCC | 3 cut(s) | 458, 484, 2321 |
| BmeT110I | CYCGRG | 1 cut(s) | 1707 |
| BmgT120I | GGNCC | 4 cut(s) | 125, 458, 484, 2321 |
| BmiI | GGNNCC | 7 cut(s) | 276, 485, 1332, 2030, 2068, 2322, 2380 |
| BmrFI | CCNGG | 4 cut(s) | 456, 926, 1889, 2353 |
| BmrI | ACTGGG | 3 cut(s) | 1682, 1845, 2276 |
| BmsI | GCATC | 3 cut(s) | 1449, 1727, 1922 |
| BmtI | GCTAGC | 1 cut(s) | 966 |
| BmuI | ACTGGG | 3 cut(s) | 1682, 1845, 2276 |
| BpiI | GAAGAC | 1 cut(s) | 1446 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1228, 1260 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1056, 1367 |
| Bpu14I | TTCGAA | 1 cut(s) | 88 |
| BpuMI | CCSGG | 2 cut(s) | 926, 1889 |
| BsaHI | GRCGYC | 1 cut(s) | 1270 |
| BsaJI | CCNNGG | 6 cut(s) | 99, 1232, 1556, 2168, 2351, 2418 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 368, 398 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 314, 1061, 1763 |
| Bse118I | RCCGGY | 1 cut(s) | 2471 |
| Bse1I | ACTGG | 6 cut(s) | 732, 1167, 1688, 1840, 2068, 2271 |
| BseBI | CCWGG | 2 cut(s) | 456, 2353 |
| BseDI | CCNNGG | 6 cut(s) | 99, 1232, 1556, 2168, 2351, 2418 |
| BseGI | GGATG | 3 cut(s) | 385, 878, 913 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 314, 1061, 1763 |
| BseMII | CTCAG | 6 cut(s) | 324, 683, 767, 897, 1070, 1358 |
| BseNI | ACTGG | 6 cut(s) | 732, 1167, 1688, 1840, 2068, 2271 |
| BseRI | GAGGAG | 3 cut(s) | 260, 864, 2447 |
| BseSI | GKGCMC | 1 cut(s) | 2024 |
| BseXI | GCAGC | 6 cut(s) | 133, 1564, 1984, 2122, 2222, 2461 |
| BseYI | CCCAGC | 3 cut(s) | 117, 1060, 2139 |
| Bsh1285I | CGRYCG | 1 cut(s) | 24 |
| BshFI | GGCC | 7 cut(s) | 98, 126, 1406, 1989, 2297, 2417, 2471 |
| BshNI | GGYRCC | 2 cut(s) | 2066, 2378 |
| BsiEI | CGRYCG | 1 cut(s) | 24 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1666 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1707 |
| BsiSI | CCGG | 3 cut(s) | 926, 1889, 2472 |
| BslFI | GGGAC | 3 cut(s) | 582, 2074, 2334 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 314, 1061, 1763 |
| BsmFI | GGGAC | 3 cut(s) | 582, 2074, 2334 |
| BsmI | GAATGC | 1 cut(s) | 641 |
| BsnI | GGCC | 7 cut(s) | 98, 126, 1406, 1989, 2297, 2417, 2471 |
| BsoBI | CYCGRG | 1 cut(s) | 1707 |
| Bsp119I | TTCGAA | 1 cut(s) | 88 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1666, 1790, 2024 |
| Bsp19I | CCATGG | 1 cut(s) | 2418 |
| BspANI | GGCC | 7 cut(s) | 98, 126, 1406, 1989, 2297, 2417, 2471 |
| BspCNI | CTCAG | 6 cut(s) | 325, 682, 766, 896, 1069, 1359 |
| BspHI | TCATGA | 1 cut(s) | 1246 |
| BspLI | GGNNCC | 7 cut(s) | 276, 485, 1332, 2030, 2068, 2322, 2380 |
| BspMAI | CTGCAG | 1 cut(s) | 1389 |
| BspMI | ACCTGC | 1 cut(s) | 1624 |
| BspOI | GCTAGC | 1 cut(s) | 966 |
| BspPI | GGATC | 3 cut(s) | 1002, 1547, 2166 |
| BspT104I | TTCGAA | 1 cut(s) | 88 |
| BspT107I | GGYRCC | 2 cut(s) | 2066, 2378 |
| BspTI | CTTAAG | 1 cut(s) | 2042 |
| BsrBI | CCGCTC | 2 cut(s) | 73, 2261 |
| BsrFI | RCCGGY | 1 cut(s) | 2471 |
| BsrI | ACTGG | 6 cut(s) | 732, 1167, 1688, 1840, 2068, 2271 |
| BssAI | RCCGGY | 1 cut(s) | 2471 |
| BssECI | CCNNGG | 6 cut(s) | 99, 1232, 1556, 2168, 2351, 2418 |
| BssNI | GRCGYC | 1 cut(s) | 1270 |
| BssSI | CACGAG | 1 cut(s) | 2315 |
| BssT1I | CCWWGG | 3 cut(s) | 99, 2168, 2418 |
| Bst2BI | CACGAG | 1 cut(s) | 2315 |
| Bst2UI | CCWGG | 2 cut(s) | 456, 2353 |
| Bst4CI | ACNGT | 5 cut(s) | 230, 1024, 1305, 1585, 1812 |
| Bst6I | CTCTTC | 1 cut(s) | 888 |
| BstACI | GRCGYC | 1 cut(s) | 1270 |
| BstAFI | CTTAAG | 1 cut(s) | 2042 |
| BstBI | TTCGAA | 1 cut(s) | 88 |
| BstDEI | CTNAG | 9 cut(s) | 129, 333, 564, 669, 753, 883, 1056, 1367, 1631 |
| BstDSI | CCRYGG | 2 cut(s) | 1232, 2418 |
| BstF5I | GGATG | 3 cut(s) | 385, 878, 913 |
| BstH2I | RGCGCY | 1 cut(s) | 2348 |
| BstHHI | GCGC | 1 cut(s) | 2347 |
| BstMCI | CGRYCG | 1 cut(s) | 24 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 123, 935, 1759, 1768, 2189, 2414 |
| BstNI | CCWGG | 2 cut(s) | 456, 2353 |
| BstNSI | RCATGY | 2 cut(s) | 403, 626 |
| BstSCI | CCNGG | 4 cut(s) | 454, 924, 1887, 2351 |
| BstSFI | CTRYAG | 3 cut(s) | 1385, 1908, 1921 |
| BstSLI | GKGCMC | 1 cut(s) | 2024 |
| BstV1I | GCAGC | 6 cut(s) | 133, 1564, 1984, 2122, 2222, 2461 |
| BstV2I | GAAGAC | 1 cut(s) | 1446 |
| BstX2I | RGATCY | 4 cut(s) | 1007, 1198, 1634, 2158 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 170 |
| BstYI | RGATCY | 4 cut(s) | 1007, 1198, 1634, 2158 |
| BsuRI | GGCC | 7 cut(s) | 98, 126, 1406, 1989, 2297, 2417, 2471 |
| BtgI | CCRYGG | 2 cut(s) | 1232, 2418 |
| BtgZI | GCGATG | 1 cut(s) | 513 |
| BtsCI | GGATG | 3 cut(s) | 385, 878, 913 |
| BtsI | GCAGTG | 3 cut(s) | 1382, 1950, 2298 |
| BtsIMutI | CAGTG | 6 cut(s) | 175, 739, 1382, 1950, 2264, 2298 |
| BveI | ACCTGC | 1 cut(s) | 1624 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1136 |
| CciI | TCATGA | 1 cut(s) | 1246 |
| CfoI | GCGC | 1 cut(s) | 2347 |
| Cfr10I | RCCGGY | 1 cut(s) | 2471 |
| Cfr13I | GGNCC | 4 cut(s) | 125, 458, 484, 2321 |
| Csp6I | GTAC | 4 cut(s) | 1052, 1263, 1628, 1712 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2212, 2247 |
| CviAII | CATG | 8 cut(s) | 400, 608, 623, 1247, 1823, 2107, 2383, 2419 |
| CviQI | GTAC | 4 cut(s) | 1052, 1263, 1628, 1712 |
| DdeI | CTNAG | 9 cut(s) | 129, 333, 564, 669, 753, 883, 1056, 1367, 1631 |
| EaeI | YGGCCR | 2 cut(s) | 96, 2469 |
| Eam1104I | CTCTTC | 1 cut(s) | 888 |
| EarI | CTCTTC | 1 cut(s) | 888 |
| Eco130I | CCWWGG | 3 cut(s) | 99, 2168, 2418 |
| Eco24I | GRGCYC | 1 cut(s) | 1790 |
| Eco47I | GGWCC | 3 cut(s) | 458, 484, 2321 |
| Eco47III | AGCGCT | 1 cut(s) | 2346 |
| Eco57I | CTGAAG | 2 cut(s) | 662, 1158 |
| Eco88I | CYCGRG | 1 cut(s) | 1707 |
| EcoO109I | RGGNCCY | 1 cut(s) | 125 |
| EcoRI | GAATTC | 1 cut(s) | 1950 |
| EcoRII | CCWGG | 2 cut(s) | 454, 2351 |
| EcoT14I | CCWWGG | 3 cut(s) | 99, 2168, 2418 |
| EcoT38I | GRGCYC | 1 cut(s) | 1790 |
| ErhI | CCWWGG | 3 cut(s) | 99, 2168, 2418 |
| FaeI | CATG | 8 cut(s) | 403, 611, 626, 1250, 1826, 2110, 2386, 2422 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2025, 2057, 2036, 2068 |
| FaqI | GGGAC | 3 cut(s) | 582, 2074, 2334 |
| FatI | CATG | 8 cut(s) | 399, 607, 622, 1246, 1822, 2106, 2382, 2418 |
| FauI | CCCGC | 5 cut(s) | 474, 772, 1764, 2148, 2195 |
| FbaI | TGATCA | 3 cut(s) | 658, 688, 760 |
| FblI | GTMKAC | 1 cut(s) | 2272 |
| Fnu4HI | GCNGC | 9 cut(s) | 71, 96, 147, 740, 1578, 1973, 2136, 2211, 2450 |
| FokI | GGATG | 3 cut(s) | 392, 865, 920 |
| FriOI | GRGCYC | 1 cut(s) | 1790 |
| Fsp4HI | GCNGC | 9 cut(s) | 71, 96, 147, 740, 1578, 1973, 2136, 2211, 2450 |
| FspBI | CTAG | 6 cut(s) | 632, 840, 963, 1266, 2162, 2409 |
| GlaI | GCGC | 1 cut(s) | 2346 |
| GluI | GCNGC | 9 cut(s) | 71, 96, 147, 740, 1578, 1973, 2136, 2211, 2450 |
| GsaI | CCCAGC | 3 cut(s) | 121, 1064, 2143 |
| HaeII | RGCGCY | 1 cut(s) | 2348 |
| HaeIII | GGCC | 7 cut(s) | 98, 126, 1406, 1989, 2297, 2417, 2471 |
| HapII | CCGG | 3 cut(s) | 926, 1889, 2472 |
| HhaI | GCGC | 1 cut(s) | 2347 |
| Hin1I | GRCGYC | 1 cut(s) | 1270 |
| Hin1II | CATG | 8 cut(s) | 403, 611, 626, 1250, 1826, 2110, 2386, 2422 |
| Hin6I | GCGC | 1 cut(s) | 2345 |
| HinP1I | GCGC | 1 cut(s) | 2345 |
| HincII | GTYRAC | 1 cut(s) | 2273 |
| HindII | GTYRAC | 1 cut(s) | 2273 |
| HindIII | AAGCTT | 2 cut(s) | 956, 1751 |
| HpaII | CCGG | 3 cut(s) | 926, 1889, 2472 |
| HphI | GGTGA | 8 cut(s) | 188, 236, 911, 939, 1024, 1180, 1487, 2212 |
| Hpy166II | GTNNAC | 3 cut(s) | 716, 1856, 2273 |
| Hpy188I | TCNGA | 8 cut(s) | 279, 591, 672, 681, 756, 1138, 1537, 1560 |
| Hpy188III | TCNNGA | 9 cut(s) | 487, 701, 1085, 1202, 1247, 1377, 1510, 1547, 2162 |
| Hpy8I | GTNNAC | 3 cut(s) | 716, 1856, 2273 |
| Hpy99I | CGWCG | 1 cut(s) | 1263 |
| HpyCH4III | ACNGT | 5 cut(s) | 230, 1024, 1305, 1585, 1812 |
| HpyCH4IV | ACGT | 4 cut(s) | 833, 1261, 1270, 1730 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 123, 935, 1759, 1768, 2189, 2414 |
| HpyF3I | CTNAG | 9 cut(s) | 129, 333, 564, 669, 753, 883, 1056, 1367, 1631 |
| HpySE526I | ACGT | 4 cut(s) | 833, 1261, 1270, 1730 |
| Hsp92I | GRCGYC | 1 cut(s) | 1270 |
| Hsp92II | CATG | 8 cut(s) | 403, 611, 626, 1250, 1826, 2110, 2386, 2422 |
| HspAI | GCGC | 1 cut(s) | 2345 |
| Ksp22I | TGATCA | 3 cut(s) | 658, 688, 760 |
| LmnI | GCTCC | 5 cut(s) | 2266, 2342, 2374, 2434, 2457 |
| Lsp1109I | GCAGC | 6 cut(s) | 133, 1564, 1984, 2122, 2222, 2461 |
| LweI | GCATC | 3 cut(s) | 1449, 1727, 1922 |
| MaeI | CTAG | 6 cut(s) | 632, 840, 963, 1266, 2162, 2409 |
| MaeII | ACGT | 4 cut(s) | 833, 1261, 1270, 1730 |
| MaeIII | GTNAC | 9 cut(s) | 157, 224, 412, 542, 603, 910, 1186, 1271, 2218 |
| MbiI | CCGCTC | 2 cut(s) | 73, 2261 |
| MboII | GAAGA | 9 cut(s) | 226, 623, 668, 738, 905, 1105, 1169, 1208, 1451 |
| MfeI | CAATTG | 1 cut(s) | 2178 |
| MflI | RGATCY | 4 cut(s) | 1007, 1198, 1634, 2158 |
| MhlI | GDGCHC | 3 cut(s) | 1666, 1790, 2024 |
| MlyI | GAGTC | 3 cut(s) | 569, 1142, 1699 |
| MmeI | TCCRAC | 4 cut(s) | 850, 1277, 1904, 2479 |
| MslI | CAYNNNNRTG | 1 cut(s) | 634 |
| MspA1I | CMGCKG | 5 cut(s) | 49, 938, 1060, 1975, 2213 |
| MspCI | CTTAAG | 1 cut(s) | 2042 |
| MspI | CCGG | 3 cut(s) | 926, 1889, 2472 |
| MspR9I | CCNGG | 4 cut(s) | 456, 926, 1889, 2353 |
| MunI | CAATTG | 1 cut(s) | 2178 |
| Mva1269I | GAATGC | 1 cut(s) | 641 |
| MvaI | CCWGG | 2 cut(s) | 456, 2353 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 123, 935, 1759, 1768, 2189, 2414 |
| NciI | CCSGG | 2 cut(s) | 926, 1889 |
| NcoI | CCATGG | 1 cut(s) | 2418 |
| NheI | GCTAGC | 1 cut(s) | 962 |
| NlaIII | CATG | 8 cut(s) | 403, 611, 626, 1250, 1826, 2110, 2386, 2422 |
| NlaIV | GGNNCC | 7 cut(s) | 276, 485, 1332, 2030, 2068, 2322, 2380 |
| NmuCI | GTSAC | 6 cut(s) | 224, 412, 603, 1186, 1271, 2218 |
| NspI | RCATGY | 2 cut(s) | 403, 626 |
| NspV | TTCGAA | 1 cut(s) | 88 |
| PaeI | GCATGC | 1 cut(s) | 403 |
| PaeR7I | CTCGAG | 1 cut(s) | 1707 |
| PagI | TCATGA | 1 cut(s) | 1246 |
| PciI | ACATGT | 1 cut(s) | 622 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 81, 1200, 1267 |
| PctI | GAATGC | 1 cut(s) | 641 |
| PfeI | GAWTC | 7 cut(s) | 26, 43, 586, 673, 932, 1149, 2123 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1763 |
| PfoI | TCCNGGA | 1 cut(s) | 1887 |
| PkrI | GCNGC | 9 cut(s) | 72, 97, 148, 741, 1579, 1974, 2137, 2212, 2451 |
| Ple19I | CGATCG | 1 cut(s) | 24 |
| PleI | GAGTC | 3 cut(s) | 568, 1141, 1699 |
| PpsI | GAGTC | 3 cut(s) | 568, 1141, 1699 |
| PscI | ACATGT | 1 cut(s) | 622 |
| Psp1406I | AACGTT | 1 cut(s) | 1730 |
| Psp6I | CCWGG | 2 cut(s) | 454, 2351 |
| PspFI | CCCAGC | 3 cut(s) | 117, 1060, 2139 |
| PspGI | CCWGG | 2 cut(s) | 454, 2351 |
| PspN4I | GGNNCC | 7 cut(s) | 276, 485, 1332, 2030, 2068, 2322, 2380 |
| PspPI | GGNCC | 4 cut(s) | 125, 458, 484, 2321 |
| PspXI | VCTCGAGB | 1 cut(s) | 1707 |
| PstI | CTGCAG | 1 cut(s) | 1389 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1136 |
| PsuI | RGATCY | 4 cut(s) | 1007, 1198, 1634, 2158 |
| PvuI | CGATCG | 1 cut(s) | 24 |
| PvuII | CAGCTG | 4 cut(s) | 49, 938, 1060, 2213 |
| RsaI | GTAC | 4 cut(s) | 1053, 1264, 1629, 1713 |
| RsaNI | GTAC | 4 cut(s) | 1052, 1263, 1628, 1712 |
| RseI | CAYNNNNRTG | 1 cut(s) | 634 |
| SalI | GTCGAC | 1 cut(s) | 2271 |
| SatI | GCNGC | 9 cut(s) | 71, 96, 147, 740, 1578, 1973, 2136, 2211, 2450 |
| Sau96I | GGNCC | 4 cut(s) | 125, 458, 484, 2321 |
| SchI | GAGTC | 3 cut(s) | 569, 1142, 1699 |
| ScrFI | CCNGG | 4 cut(s) | 456, 926, 1889, 2353 |
| SduI | GDGCHC | 3 cut(s) | 1666, 1790, 2024 |
| SfaNI | GCATC | 3 cut(s) | 1449, 1727, 1922 |
| SfcI | CTRYAG | 3 cut(s) | 1385, 1908, 1921 |
| Sfr274I | CTCGAG | 1 cut(s) | 1707 |
| SfuI | TTCGAA | 1 cut(s) | 88 |
| SinI | GGWCC | 3 cut(s) | 458, 484, 2321 |
| SlaI | CTCGAG | 1 cut(s) | 1707 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 634 |
| SmlI | CTYRAG | 2 cut(s) | 1707, 2042 |
| SmoI | CTYRAG | 2 cut(s) | 1707, 2042 |
| SphI | GCATGC | 1 cut(s) | 403 |
| SspI | AATATT | 1 cut(s) | 979 |
| SspMI | CTAG | 6 cut(s) | 632, 840, 963, 1266, 2162, 2409 |
| StyD4I | CCNGG | 4 cut(s) | 454, 924, 1887, 2351 |
| StyI | CCWWGG | 3 cut(s) | 99, 2168, 2418 |
| TaaI | ACNGT | 5 cut(s) | 230, 1024, 1305, 1585, 1812 |
| TaiI | ACGT | 4 cut(s) | 836, 1264, 1273, 1733 |
| TatI | WGTACW | 1 cut(s) | 1711 |
| TauI | GCSGC | 3 cut(s) | 73, 98, 742 |
| TfiI | GAWTC | 7 cut(s) | 26, 43, 586, 673, 932, 1149, 2123 |
| TscAI | CASTG | 6 cut(s) | 175, 739, 1389, 1950, 2271, 2298 |
| TseFI | GTSAC | 6 cut(s) | 224, 412, 603, 1186, 1271, 2218 |
| TseI | GCWGC | 6 cut(s) | 146, 1577, 1972, 2135, 2210, 2449 |
| Tsp45I | GTSAC | 6 cut(s) | 224, 412, 603, 1186, 1271, 2218 |
| TspDTI | ATGAA | 7 cut(s) | 609, 624, 906, 1017, 1452, 2255, 2399 |
| TspGWI | ACGGA | 4 cut(s) | 568, 1249, 2079, 2361 |
| TspRI | CASTG | 6 cut(s) | 175, 739, 1389, 1950, 2271, 2298 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1763 |
| Vha464I | CTTAAG | 1 cut(s) | 2042 |
| VpaK11BI | GGWCC | 3 cut(s) | 458, 484, 2321 |
| XapI | RAATTY | 4 cut(s) | 152, 310, 1513, 1950 |
| XbaI | TCTAGA | 1 cut(s) | 2161 |
| XceI | RCATGY | 2 cut(s) | 403, 626 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 170 |
| XhoI | CTCGAG | 1 cut(s) | 1707 |
| XmiI | GTMKAC | 1 cut(s) | 2272 |
| XspI | CTAG | 6 cut(s) | 632, 840, 963, 1266, 2162, 2409 |
| ZraI | GACGTC | 1 cut(s) | 1271 |