Rmu_sc0000071.1_g000027

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000071.1
OG0013077
Physical Location & Seq
Reverse (-)
104529 .. 107110
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000071.1_g000027.1.cds

Sequence Viewer

Length: 1086 bp
atggcatcacttaaaaatgcaggactcccagctaatgaagacaatgctgttgctatgatgcgatttctcaatgcagatactaaaggatctatttcttatggacattttaggaattttatgctcttgctgccttctgatcggcttcaagatgatcctcggagtatttggtttgaggctgcaactgttgttgctgttgccccacctgtggaaatacctgctggaagcgtactaagatctgcattagctgggggcctttcttgtgcactttctactgctttaatgcacccggtcgacacaattaagactcgagtacaagcatcaaccttaaccttccccgaaattatttcgaagcttccacagattggagtgcgggggttatacaggggttcagttcccgcaattcttggacaattttcaagtcatggcctgcgaactggaatatttgaagcaagtaaacttgtgttaataaatgttgctccgacgcttccagatatacaggtccaatctctagcatcattctgcagcacagttttgggaacagcagtccggattccttgtgaggtgttaaagcagcggtgtcaggctggcctttttgacaatgttgggcaggctcttgtgggaacttggcaccaagatggtctcaaaggtttcttccgtggaactggtgccactctttgccgggaagttccattctatgtcgctggcatggggctttatgctgaatccaaaaaggttgcccaacaagttctagggcgggagttggaaccgtgggaaacaattgtcgttggggccttatctggcgggttagctgctgttgtcactacaccctttgatgtgatgaaaacaagaatgatgactgctccacagggtcgacctatatcaatgtcaattatagcctactctattctccgccacgagggacccctgggcttattcaaaggagcggtgcccaggtttttctggattgctccattgggtgccatgaactttgcaggctatgagcttgctaggaaggccatggaccgaaatcaagagctagctgctgctgaacagctccagcaaaagaaggtggccactactggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

361

Amino Acids

38.7

Weight (kDa)

9.33

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35800
fragaria_vesca FvH4_7g20100
malus_domestica MD01G1130600.v1.1 MD07G1178700.v1.1
prunus_persica Prupe.2G217800_v2.0.a1
pyrus_communis pycom01g13940 pycom07g17230 pycom07g17240
rosa_chinensis RchiOBHm_Chr1g0364061
rosa_laevigata RLG00000027520
rosa_multiflora Rmu_sc0000071.1_g000027 Rmu_sc0009677.1_g000022
rosa_roxburghii Rroxscaffold_4G00292680
rosa_rugosa Rorug01G0313100 Rorug01G0313200 Rorug01G0313200
rosa_samantha Rh1DG315200
rosa_wichuraiana Rw1G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 223
AccB1I GGYRCC 4 cut(s) 627, 665, 946, 977
AccB7I CCANNNNNTGG 1 cut(s) 362
AccBSI CCGCTC 1 cut(s) 944
AccI GTMKAC 2 cut(s) 291, 871
AccIII TCCGGA 1 cut(s) 546
AciI CCGC 7 cut(s) 370, 396, 574, 754, 801, 910, 944
AclWI GGATC 2 cut(s) 94, 146
AcoI YGGCCR 1 cut(s) 1071
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 2 cut(s) 228, 312
AfiI CCNNNNNNNGG 3 cut(s) 205, 362, 916
AgsI TTSAA 4 cut(s) 146, 417, 446, 937
AjnI CCWGG 2 cut(s) 924, 950
AluBI AGCT 8 cut(s) 32, 245, 352, 809, 1003, 1036, 1040, 1054
AluI AGCT 8 cut(s) 32, 245, 352, 809, 1003, 1036, 1040, 1054
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 644
Alw44I GTGCAC 1 cut(s) 261
AlwI GGATC 2 cut(s) 94, 146
Ama87I CYCGRG 1 cut(s) 306
Aor13HI TCCGGA 1 cut(s) 546
AoxI GGCC 6 cut(s) 250, 424, 586, 789, 1014, 1071
ApaLI GTGCAC 1 cut(s) 261
ApeKI GCWGC 7 cut(s) 127, 176, 522, 571, 809, 1040, 1043
ApoI RAATTY 1 cut(s) 112
AspS9I GGNCC 5 cut(s) 250, 499, 789, 920, 1021
AsuC2I CCSGG 2 cut(s) 287, 680
AsuII TTCGAA 1 cut(s) 347
AsuNHI GCTAGC 1 cut(s) 1036
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 3 cut(s) 499, 920, 1021
BaeGI GKGCMC 2 cut(s) 265, 951
BalI TGGCCA 1 cut(s) 1073
BanI GGYRCC 4 cut(s) 627, 665, 946, 977
BauI CACGAG 1 cut(s) 914
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 7 cut(s) 114, 163, 534, 583, 796, 1027, 1030
BccI CCATC 1 cut(s) 629
BciT130I CCWGG 2 cut(s) 926, 952
BcnI CCSGG 2 cut(s) 287, 680
BcoDI GTCTC 1 cut(s) 644
BfaI CTAG 4 cut(s) 509, 749, 1008, 1037
BfmI CTRYAG 1 cut(s) 520
BfuAI ACCTGC 1 cut(s) 223
BglII AGATCT 1 cut(s) 233
BisI GCNGC 7 cut(s) 128, 177, 523, 572, 810, 1041, 1044
BlsI GCNGC 7 cut(s) 129, 178, 524, 573, 811, 1042, 1045
Bme1390I CCNGG 4 cut(s) 287, 680, 926, 952
Bme18I GGWCC 3 cut(s) 499, 920, 1021
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 5 cut(s) 250, 499, 789, 920, 1021
BmiI GGNNCC 9 cut(s) 251, 629, 667, 765, 790, 921, 922, 948, 979
BmrFI CCNGG 4 cut(s) 287, 680, 926, 952
BmsI GCATC 4 cut(s) 14, 48, 326, 521
BmtI GCTAGC 1 cut(s) 1040
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 1040
Bpu14I TTCGAA 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 287, 680
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 7 cut(s) 155, 655, 767, 924, 925, 950, 1017
BsaWI WCCGGW 1 cut(s) 546
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 362, 916
Bse1I ACTGG 3 cut(s) 439, 667, 1084
BseAI TCCGGA 1 cut(s) 546
BseBI CCWGG 2 cut(s) 926, 952
BseDI CCNNGG 7 cut(s) 155, 655, 767, 924, 925, 950, 1017
BseLI CCNNNNNNNGG 3 cut(s) 205, 362, 916
BseNI ACTGG 3 cut(s) 439, 667, 1084
BseSI GKGCMC 2 cut(s) 265, 951
BseXI GCAGC 7 cut(s) 114, 163, 534, 583, 796, 1027, 1030
BseYI CCCAGC 2 cut(s) 28, 245
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 6 cut(s) 252, 426, 588, 791, 1016, 1073
BshNI GGYRCC 4 cut(s) 627, 665, 946, 977
BsiEI CGRYCG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 3 cut(s) 287, 547, 679
BslFI GGGAC 1 cut(s) 933
BslI CCNNNNNNNGG 3 cut(s) 205, 362, 916
BsmAI GTCTC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 933
BsnI GGCC 6 cut(s) 252, 426, 588, 791, 1016, 1073
Bso31I GGTCTC 1 cut(s) 644
BsoBI CYCGRG 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 265, 951
Bsp13I TCCGGA 1 cut(s) 546
Bsp143I GATC 4 cut(s) 86, 136, 151, 233
Bsp19I CCATGG 1 cut(s) 1017
BspACI CCGC 7 cut(s) 370, 396, 574, 754, 801, 910, 944
BspANI GGCC 6 cut(s) 252, 426, 588, 791, 1016, 1073
BspEI TCCGGA 1 cut(s) 546
BspLI GGNNCC 9 cut(s) 251, 629, 667, 765, 790, 921, 922, 948, 979
BspMAI CTGCAG 1 cut(s) 524
BspMI ACCTGC 1 cut(s) 223
BspOI GCTAGC 1 cut(s) 1040
BspPI GGATC 2 cut(s) 94, 146
BspT104I TTCGAA 1 cut(s) 347
BspT107I GGYRCC 4 cut(s) 627, 665, 946, 977
BspTNI GGTCTC 1 cut(s) 644
BsrBI CCGCTC 1 cut(s) 944
BsrI ACTGG 3 cut(s) 439, 667, 1084
BssECI CCNNGG 7 cut(s) 155, 655, 767, 924, 925, 950, 1017
BssMI GATC 4 cut(s) 86, 136, 151, 233
BssSI CACGAG 1 cut(s) 914
BssT1I CCWWGG 1 cut(s) 1017
Bst2BI CACGAG 1 cut(s) 914
Bst2UI CCWGG 2 cut(s) 926, 952
Bst4CI ACNGT 3 cut(s) 184, 529, 768
BstBI TTCGAA 1 cut(s) 347
BstC8I GCNNGC 7 cut(s) 428, 586, 609, 703, 994, 1005, 1038
BstDEI CTNAG 1 cut(s) 230
BstDSI CCRYGG 3 cut(s) 655, 767, 1017
BstKTI GATC 4 cut(s) 89, 139, 154, 236
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 4 cut(s) 86, 136, 151, 233
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 2 cut(s) 127, 1013
BstNI CCWGG 2 cut(s) 926, 952
BstSCI CCNGG 4 cut(s) 285, 678, 924, 950
BstSFI CTRYAG 1 cut(s) 520
BstSLI GKGCMC 2 cut(s) 265, 951
BstV1I GCAGC 7 cut(s) 114, 163, 534, 583, 796, 1027, 1030
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 86, 233
BstYI RGATCY 2 cut(s) 86, 233
BsuRI GGCC 6 cut(s) 252, 426, 588, 791, 1016, 1073
BtgI CCRYGG 3 cut(s) 655, 767, 1017
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 7 cut(s) 428, 586, 609, 703, 994, 1005, 1038
Cfr13I GGNCC 5 cut(s) 250, 499, 789, 920, 1021
CseI GACGC 1 cut(s) 490
Csp6I GTAC 2 cut(s) 227, 311
CviAII CATG 4 cut(s) 422, 706, 982, 1018
CviQI GTAC 2 cut(s) 227, 311
DdeI CTNAG 1 cut(s) 230
DpnI GATC 4 cut(s) 88, 138, 153, 235
DpnII GATC 4 cut(s) 86, 136, 151, 233
EaeI YGGCCR 1 cut(s) 1071
EciI GGCGGA 1 cut(s) 899
Eco130I CCWWGG 1 cut(s) 1017
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 3 cut(s) 499, 920, 1021
Eco88I CYCGRG 1 cut(s) 306
EcoO109I RGGNCCY 3 cut(s) 250, 789, 920
EcoRII CCWGG 2 cut(s) 924, 950
EcoT14I CCWWGG 1 cut(s) 1017
ErhI CCWWGG 1 cut(s) 1017
FaeI CATG 4 cut(s) 425, 709, 985, 1021
FaqI GGGAC 1 cut(s) 933
FatI CATG 4 cut(s) 421, 705, 981, 1017
FauI CCCGC 4 cut(s) 363, 403, 747, 794
FblI GTMKAC 2 cut(s) 291, 871
Fnu4HI GCNGC 7 cut(s) 128, 177, 523, 572, 810, 1041, 1044
Fsp4HI GCNGC 7 cut(s) 128, 177, 523, 572, 810, 1041, 1044
FspBI CTAG 4 cut(s) 509, 749, 1008, 1037
GluI GCNGC 7 cut(s) 128, 177, 523, 572, 810, 1041, 1044
GsaI CCCAGC 2 cut(s) 32, 249
GsuI CTGGAG 1 cut(s) 1040
HaeIII GGCC 6 cut(s) 252, 426, 588, 791, 1016, 1073
HapII CCGG 3 cut(s) 287, 547, 679
HgaI GACGC 1 cut(s) 490
Hin1II CATG 4 cut(s) 425, 709, 985, 1021
HincII GTYRAC 2 cut(s) 292, 872
HindII GTYRAC 2 cut(s) 292, 872
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 4 cut(s) 24, 304, 550, 722
HpaII CCGG 3 cut(s) 287, 547, 679
Hpy166II GTNNAC 4 cut(s) 263, 292, 455, 872
Hpy188I TCNGA 3 cut(s) 136, 159, 480
Hpy188III TCNNGA 5 cut(s) 146, 488, 547, 961, 1031
Hpy8I GTNNAC 4 cut(s) 263, 292, 455, 872
Hpy99I CGWCG 1 cut(s) 484
HpyAV CCTTC 4 cut(s) 141, 340, 1006, 1060
HpyCH4III ACNGT 3 cut(s) 184, 529, 768
HpyCH4V TGCA 8 cut(s) 20, 74, 179, 239, 263, 283, 522, 992
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 1013
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 4 cut(s) 425, 709, 985, 1021
KflI GGGWCCC 1 cut(s) 920
Kpn2I TCCGGA 1 cut(s) 546
Kzo9I GATC 4 cut(s) 86, 136, 151, 233
LmnI GCTCC 5 cut(s) 481, 865, 941, 973, 1059
Lsp1109I GCAGC 7 cut(s) 114, 163, 534, 583, 796, 1027, 1030
LweI GCATC 4 cut(s) 14, 48, 326, 521
MaeI CTAG 4 cut(s) 509, 749, 1008, 1037
MaeIII GTNAC 1 cut(s) 817
MalI GATC 4 cut(s) 88, 138, 153, 235
MbiI CCGCTC 1 cut(s) 944
MboI GATC 4 cut(s) 86, 136, 151, 233
MboII GAAGA 2 cut(s) 50, 643
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 2 cut(s) 86, 233
MhlI GDGCHC 2 cut(s) 265, 951
MlsI TGGCCA 1 cut(s) 1073
MluCI AATT 7 cut(s) 112, 297, 339, 399, 410, 777, 888
MluNI TGGCCA 1 cut(s) 1073
MlyI GAGTC 2 cut(s) 18, 298
MmeI TCCRAC 2 cut(s) 503, 741
MnlI CCTC 4 cut(s) 165, 166, 553, 910
Mox20I TGGCCA 1 cut(s) 1073
MroI TCCGGA 1 cut(s) 546
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 6 cut(s) 12, 278, 300, 326, 464, 566
MslI CAYNNNNRTG 1 cut(s) 633
Msp20I TGGCCA 1 cut(s) 1073
MspA1I CMGCKG 1 cut(s) 574
MspI CCGG 3 cut(s) 287, 547, 679
MspR9I CCNGG 4 cut(s) 287, 680, 926, 952
MunI CAATTG 1 cut(s) 777
MvaI CCWGG 2 cut(s) 926, 952
MwoI GCNNNNNNNGC 2 cut(s) 127, 1013
NciI CCSGG 2 cut(s) 287, 680
NcoI CCATGG 1 cut(s) 1017
NdeII GATC 4 cut(s) 86, 136, 151, 233
NheI GCTAGC 1 cut(s) 1036
NlaIII CATG 4 cut(s) 425, 709, 985, 1021
NlaIV GGNNCC 9 cut(s) 251, 629, 667, 765, 790, 921, 922, 948, 979
NmuCI GTSAC 1 cut(s) 817
NspV TTCGAA 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 306
PasI CCCWGGG 1 cut(s) 925
PfeI GAWTC 2 cut(s) 550, 722
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 7 cut(s) 129, 178, 524, 573, 811, 1042, 1045
PleI GAGTC 2 cut(s) 18, 298
PpsI GAGTC 2 cut(s) 18, 298
PpuMI RGGWCCY 1 cut(s) 920
Psp5II RGGWCCY 1 cut(s) 920
Psp6I CCWGG 2 cut(s) 924, 950
PspFI CCCAGC 2 cut(s) 28, 245
PspGI CCWGG 2 cut(s) 924, 950
PspN4I GGNNCC 9 cut(s) 251, 629, 667, 765, 790, 921, 922, 948, 979
PspPI GGNCC 5 cut(s) 250, 499, 789, 920, 1021
PspPPI RGGWCCY 1 cut(s) 920
PspXI VCTCGAGB 1 cut(s) 306
PstI CTGCAG 1 cut(s) 524
PsuI RGATCY 2 cut(s) 86, 233
RsaI GTAC 2 cut(s) 228, 312
RsaNI GTAC 2 cut(s) 227, 311
RseI CAYNNNNRTG 1 cut(s) 633
SalI GTCGAC 2 cut(s) 290, 870
SaqAI TTAA 6 cut(s) 12, 278, 300, 326, 464, 566
SatI GCNGC 7 cut(s) 128, 177, 523, 572, 810, 1041, 1044
Sau3AI GATC 4 cut(s) 86, 136, 151, 233
Sau96I GGNCC 5 cut(s) 250, 499, 789, 920, 1021
SchI GAGTC 2 cut(s) 18, 298
ScrFI CCNGG 4 cut(s) 287, 680, 926, 952
SduI GDGCHC 2 cut(s) 265, 951
SfaNI GCATC 4 cut(s) 14, 48, 326, 521
SfcI CTRYAG 1 cut(s) 520
Sfr274I CTCGAG 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 347
SinI GGWCC 3 cut(s) 499, 920, 1021
SlaI CTCGAG 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 7 cut(s) 112, 297, 339, 399, 410, 777, 888
SsiI CCGC 7 cut(s) 370, 396, 574, 754, 801, 910, 944
SspI AATATT 1 cut(s) 441
SspMI CTAG 4 cut(s) 509, 749, 1008, 1037
StyD4I CCNGG 4 cut(s) 285, 678, 924, 950
StyI CCWWGG 1 cut(s) 1017
TaaI ACNGT 3 cut(s) 184, 529, 768
TaqI TCGA 4 cut(s) 291, 307, 347, 871
TaqII GACCGA 1 cut(s) 1038
TasI AATT 7 cut(s) 112, 297, 339, 399, 410, 777, 888
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 2 cut(s) 550, 722
Tru1I TTAA 6 cut(s) 12, 278, 300, 326, 464, 566
Tru9I TTAA 6 cut(s) 12, 278, 300, 326, 464, 566
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 7 cut(s) 127, 176, 522, 571, 809, 1040, 1043
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 3 cut(s) 51, 854, 998
TspGWI ACGGA 1 cut(s) 644
Van91I CCANNNNNTGG 1 cut(s) 362
VneI GTGCAC 1 cut(s) 261
VpaK11BI GGWCC 3 cut(s) 499, 920, 1021
XapI RAATTY 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 306
XmiI GTMKAC 2 cut(s) 291, 871
XspI CTAG 4 cut(s) 509, 749, 1008, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.