pycom07g17240

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013077
Physical Location & Seq
Forward (+)
19762755 .. 19765831
3077 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g17240.6

Sequence Viewer

Length: 1230 bp
ATGCGCCGTACTAGACGTCACATATTTTCAAAATCATTTGGTTGGAAACAGTTTTTATCCTTGATGGAACAGAAGGAACCAACCATTCTACGAGCATATACTTCTTTATGCCTGAGCAAGTCTGGAACACTGCAGAAAAGCGAGGTATTGGCCTCACTTAAAAATGCAGGACTTCCAGCTAATGAAGACAATGCTGTTGCTATGATGCGGTTTCTCAATGGTGATACAGAAGGTTCTATATCTTATGGACATTTCAGGAATTTTATGCTCTTACTCCCGTCTGATAGACTTCAAGATGATCCTCGGAGTATCTGGTTTGAAGCTGCAACCGTTGTTGCTGTTGCACCACCAGTGGAAATACCTGCTGGAAGCGTACTACGGTCTGCATTAGCAGGGGGGCTTGCTTGTGCTCTATCTACTTCTTTAATGCACCCAGTTGATACTATTAAGACTCAAGTACAAGCATCAACATTGACGTTCCCTGAAATTATTTCCAAGCTTCCACAGCTTGGAGTGCGGGGATTATACAGGGGCTCAATTCCTGCAATTCTTGGACAGTTTTCAAGTCATGGCTTGCGAACTGGGATTTTTGAGGCAAGTAAACTTGTGTTGATAAATGTTTCTCCAACACTCCCGGATATACAGGTTCAATCTATAGCATCATTCTGTAGCACATTTTTGGGAACAGCAGTGCGAATTCCTTGTGAGGTGTTAAAGCAGCGGTGTCAGGCTGGCCTTTTTGACAATGTCGGGGAGGCTCTTGTGGGCACTTGGAACCAAGATGGTCTTAAGGGTTTCTTTCGTGGGACTGGTGCCACTCTTTGCCGTGAAGTTCCGTTTTATGTCGCTGGCATGGGGCTGTATGCTGAATCCAAAAAGGCTGCCCAGCAATTTTTAGGGCGGGATCTGGAACCTTGGGAAACAATTGCAGTTGGGGCATTATCTGGCGGGTTAGCAGCTGTTGTCACCACACCGTTTGATGTGATGAAAACAAGAATGATGACCGCTCCACCGGGTCGACCTGTATCAATGTCAATAGTGGCCTTCTCTATACTACGGCACGAGGGACCGCTTGGCTTATTCAAAGGAGCGCTACCCAGGTTTTTTTGGATTGCTCCGTTGGGTGCCATGAACTTTGCAGGCTATGAGCTTGCTAGGAAGGCCATGGACAAAAATGAGGAGCTAAACAGCGAGCAGCTCCAACAAAAGAAGGTGGCCGGTGGCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

410

Amino Acids

44.32

Weight (kDa)

9.37

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35800
fragaria_vesca FvH4_7g20100
malus_domestica MD01G1130600.v1.1 MD07G1178700.v1.1
prunus_persica Prupe.2G217800_v2.0.a1
pyrus_communis pycom01g13940 pycom07g17230 pycom07g17240
rosa_chinensis RchiOBHm_Chr1g0364061
rosa_laevigata RLG00000027520
rosa_multiflora Rmu_sc0000071.1_g000027 Rmu_sc0009677.1_g000022
rosa_roxburghii Rroxscaffold_4G00292680
rosa_rugosa Rorug01G0313100 Rorug01G0313200 Rorug01G0313200
rosa_samantha Rh1DG315200
rosa_wichuraiana Rw1G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 19
Acc36I ACCTGC 1 cut(s) 370
AccB1I GGYRCC 2 cut(s) 812, 1124
AccB7I CCANNNNNTGG 1 cut(s) 509
AccBSI CCGCTC 1 cut(s) 1007
AccI GTMKAC 1 cut(s) 1018
AciI CCGC 7 cut(s) 208, 517, 721, 901, 948, 1005, 1070
AclWI GGATC 2 cut(s) 293, 912
AcoI YGGCCR 1 cut(s) 1215
AcsI RAATTY 2 cut(s) 259, 696
AcyI GRCGYC 1 cut(s) 16
AfaI GTAC 3 cut(s) 10, 375, 459
AfeI AGCGCT 1 cut(s) 1092
AfiI CCNNNNNNNGG 1 cut(s) 509
AflII CTTAAG 1 cut(s) 788
AgsI TTSAA 6 cut(s) 30, 293, 320, 564, 650, 1084
AjnI CCWGG 1 cut(s) 1097
AluBI AGCT 8 cut(s) 179, 323, 499, 508, 959, 1150, 1183, 1198
AluI AGCT 8 cut(s) 179, 323, 499, 508, 959, 1150, 1183, 1198
Alw21I GWGCWC 1 cut(s) 412
AlwI GGATC 2 cut(s) 293, 912
Aor51HI AGCGCT 1 cut(s) 1092
AoxI GGCC 5 cut(s) 150, 733, 1041, 1161, 1215
ApeKI GCWGC 5 cut(s) 323, 718, 881, 956, 1195
ApoI RAATTY 2 cut(s) 259, 696
AspLEI GCGC 2 cut(s) 6, 1093
AspS9I GGNCC 1 cut(s) 1067
AsuC2I CCSGG 2 cut(s) 635, 1014
AsuHPI GGTGA 2 cut(s) 233, 958
AvaII GGWCC 1 cut(s) 1067
BaeGI GKGCMC 1 cut(s) 770
BanI GGYRCC 2 cut(s) 812, 1124
BanII GRGCYC 1 cut(s) 536
BauI CACGAG 1 cut(s) 1061
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 5 cut(s) 310, 730, 868, 968, 1207
BccI CCATC 2 cut(s) 58, 776
BceAI ACGGC 2 cut(s) 810, 1073
BciT130I CCWGG 1 cut(s) 1099
BcnI CCSGG 2 cut(s) 635, 1014
BfaI CTAG 2 cut(s) 12, 1155
BfmI CTRYAG 3 cut(s) 131, 654, 667
BfoI RGCGCY 1 cut(s) 1094
BfrI CTTAAG 1 cut(s) 788
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 5 cut(s) 324, 719, 882, 957, 1196
BlsI GCNGC 5 cut(s) 325, 720, 883, 958, 1197
Bme1390I CCNGG 3 cut(s) 635, 1014, 1099
Bme18I GGWCC 1 cut(s) 1067
BmgT120I GGNCC 1 cut(s) 1067
BmiI GGNNCC 6 cut(s) 78, 776, 814, 912, 1068, 1126
BmrFI CCNGG 3 cut(s) 635, 1014, 1099
BmrI ACTGGG 2 cut(s) 428, 591
BmsI GCATC 3 cut(s) 195, 473, 668
BmuI ACTGGG 2 cut(s) 428, 591
BpiI GAAGAC 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 438
BpuMI CCSGG 2 cut(s) 635, 1014
BsaHI GRCGYC 1 cut(s) 16
BsaJI CCNNGG 4 cut(s) 302, 914, 1097, 1164
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse118I RCCGGY 1 cut(s) 1217
Bse1I ACTGG 4 cut(s) 350, 434, 586, 814
BseBI CCWGG 1 cut(s) 1099
BseDI CCNNGG 4 cut(s) 302, 914, 1097, 1164
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 4 cut(s) 350, 434, 586, 814
BseRI GAGGAG 1 cut(s) 1193
BseSI GKGCMC 1 cut(s) 770
BseXI GCAGC 5 cut(s) 310, 730, 868, 968, 1207
BseYI CCCAGC 1 cut(s) 885
BshFI GGCC 5 cut(s) 152, 735, 1043, 1163, 1217
BshNI GGYRCC 2 cut(s) 812, 1124
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 3 cut(s) 635, 1013, 1218
BslFI GGGAC 2 cut(s) 820, 1080
BslI CCNNNNNNNGG 1 cut(s) 509
BsmFI GGGAC 2 cut(s) 820, 1080
BsnI GGCC 5 cut(s) 152, 735, 1043, 1163, 1217
Bsp1286I GDGCHC 3 cut(s) 412, 536, 770
Bsp143I GATC 2 cut(s) 298, 904
Bsp19I CCATGG 1 cut(s) 1164
BspACI CCGC 7 cut(s) 208, 517, 721, 901, 948, 1005, 1070
BspANI GGCC 5 cut(s) 152, 735, 1043, 1163, 1217
BspCNI CTCAG 1 cut(s) 105
BspLI GGNNCC 6 cut(s) 78, 776, 814, 912, 1068, 1126
BspMAI CTGCAG 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 2 cut(s) 293, 912
BspT107I GGYRCC 2 cut(s) 812, 1124
BspTI CTTAAG 1 cut(s) 788
BsrBI CCGCTC 1 cut(s) 1007
BsrFI RCCGGY 1 cut(s) 1217
BsrI ACTGG 4 cut(s) 350, 434, 586, 814
BssAI RCCGGY 1 cut(s) 1217
BssECI CCNNGG 4 cut(s) 302, 914, 1097, 1164
BssMI GATC 2 cut(s) 298, 904
BssNI GRCGYC 1 cut(s) 16
BssSI CACGAG 1 cut(s) 1061
BssT1I CCWWGG 2 cut(s) 914, 1164
Bst2BI CACGAG 1 cut(s) 1061
Bst2UI CCWGG 1 cut(s) 1099
Bst4CI ACNGT 5 cut(s) 51, 331, 381, 558, 975
BstACI GRCGYC 1 cut(s) 16
BstAFI CTTAAG 1 cut(s) 788
BstC8I GCNNGC 7 cut(s) 402, 575, 733, 850, 1141, 1152, 1193
BstDEI CTNAG 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 1164
BstH2I RGCGCY 1 cut(s) 1094
BstHHI GCGC 2 cut(s) 6, 1093
BstKTI GATC 2 cut(s) 301, 907
BstMBI GATC 2 cut(s) 298, 904
BstMWI GCNNNNNNNGC 4 cut(s) 505, 514, 935, 1160
BstNI CCWGG 1 cut(s) 1099
BstSCI CCNGG 3 cut(s) 633, 1012, 1097
BstSFI CTRYAG 3 cut(s) 131, 654, 667
BstSLI GKGCMC 1 cut(s) 770
BstV1I GCAGC 5 cut(s) 310, 730, 868, 968, 1207
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 904
BstYI RGATCY 1 cut(s) 904
BsuRI GGCC 5 cut(s) 152, 735, 1043, 1163, 1217
BtgI CCRYGG 1 cut(s) 1164
BtsI GCAGTG 2 cut(s) 128, 696
BtsIMutI CAGTG 3 cut(s) 128, 357, 696
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 7 cut(s) 402, 575, 733, 850, 1141, 1152, 1193
CfoI GCGC 2 cut(s) 6, 1093
Cfr10I RCCGGY 1 cut(s) 1217
Cfr13I GGNCC 1 cut(s) 1067
Csp6I GTAC 3 cut(s) 9, 374, 458
CspCI CAANNNNNGTGG 2 cut(s) 958, 993
CviAII CATG 4 cut(s) 569, 853, 1129, 1165
CviQI GTAC 3 cut(s) 9, 374, 458
DdeI CTNAG 1 cut(s) 113
DpnI GATC 2 cut(s) 300, 906
DpnII GATC 2 cut(s) 298, 904
EaeI YGGCCR 1 cut(s) 1215
Eco130I CCWWGG 2 cut(s) 914, 1164
Eco24I GRGCYC 1 cut(s) 536
Eco47I GGWCC 1 cut(s) 1067
Eco47III AGCGCT 1 cut(s) 1092
EcoRI GAATTC 1 cut(s) 696
EcoRII CCWGG 1 cut(s) 1097
EcoT14I CCWWGG 2 cut(s) 914, 1164
EcoT38I GRGCYC 1 cut(s) 536
ErhI CCWWGG 2 cut(s) 914, 1164
FaeI CATG 4 cut(s) 572, 856, 1132, 1168
FalI AAGNNNNNCTT 4 cut(s) 771, 803, 782, 814
FaqI GGGAC 2 cut(s) 820, 1080
FatI CATG 4 cut(s) 568, 852, 1128, 1164
FauI CCCGC 3 cut(s) 510, 894, 941
FblI GTMKAC 1 cut(s) 1018
Fnu4HI GCNGC 5 cut(s) 324, 719, 882, 957, 1196
FriOI GRGCYC 1 cut(s) 536
Fsp4HI GCNGC 5 cut(s) 324, 719, 882, 957, 1196
FspBI CTAG 2 cut(s) 12, 1155
GlaI GCGC 2 cut(s) 5, 1092
GluI GCNGC 5 cut(s) 324, 719, 882, 957, 1196
GsaI CCCAGC 1 cut(s) 889
HaeII RGCGCY 1 cut(s) 1094
HaeIII GGCC 5 cut(s) 152, 735, 1043, 1163, 1217
HapII CCGG 3 cut(s) 635, 1013, 1218
HhaI GCGC 2 cut(s) 6, 1093
Hin1I GRCGYC 1 cut(s) 16
Hin1II CATG 4 cut(s) 572, 856, 1132, 1168
Hin6I GCGC 2 cut(s) 4, 1091
HinP1I GCGC 2 cut(s) 4, 1091
HincII GTYRAC 1 cut(s) 1019
HindII GTYRAC 1 cut(s) 1019
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 2 cut(s) 451, 869
HpaII CCGG 3 cut(s) 635, 1013, 1218
HphI GGTGA 2 cut(s) 233, 958
Hpy166II GTNNAC 2 cut(s) 602, 1019
Hpy188I TCNGA 2 cut(s) 283, 306
Hpy188III TCNNGA 4 cut(s) 123, 256, 293, 908
Hpy8I GTNNAC 2 cut(s) 602, 1019
HpyAV CCTTC 5 cut(s) 67, 224, 1054, 1153, 1204
HpyCH4III ACNGT 5 cut(s) 51, 331, 381, 558, 975
HpyCH4IV ACGT 2 cut(s) 16, 476
HpyCH4V TGCA 9 cut(s) 133, 167, 326, 344, 386, 430, 545, 929, 1139
HpyF10VI GCNNNNNNNGC 4 cut(s) 505, 514, 935, 1160
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 16, 476
Hsp92I GRCGYC 1 cut(s) 16
Hsp92II CATG 4 cut(s) 572, 856, 1132, 1168
HspAI GCGC 2 cut(s) 4, 1091
Kzo9I GATC 2 cut(s) 298, 904
LmnI GCTCC 5 cut(s) 1012, 1088, 1120, 1180, 1203
Lsp1109I GCAGC 5 cut(s) 310, 730, 868, 968, 1207
LweI GCATC 3 cut(s) 195, 473, 668
MaeI CTAG 2 cut(s) 12, 1155
MaeII ACGT 2 cut(s) 16, 476
MaeIII GTNAC 2 cut(s) 17, 964
MalI GATC 2 cut(s) 300, 906
MbiI CCGCTC 1 cut(s) 1007
MboI GATC 2 cut(s) 298, 904
MboII GAAGA 1 cut(s) 197
MfeI CAATTG 1 cut(s) 924
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 3 cut(s) 412, 536, 770
MluCI AATT 7 cut(s) 259, 486, 537, 546, 696, 890, 924
MlyI GAGTC 1 cut(s) 445
MmeI TCCRAC 3 cut(s) 23, 650, 1225
MnlI CCTC 8 cut(s) 136, 163, 312, 586, 700, 748, 1057, 1171
MseI TTAA 6 cut(s) 159, 425, 447, 713, 789, 1228
MspA1I CMGCKG 2 cut(s) 721, 959
MspCI CTTAAG 1 cut(s) 788
MspI CCGG 3 cut(s) 635, 1013, 1218
MspR9I CCNGG 3 cut(s) 635, 1014, 1099
MunI CAATTG 1 cut(s) 924
MvaI CCWGG 1 cut(s) 1099
MwoI GCNNNNNNNGC 4 cut(s) 505, 514, 935, 1160
NciI CCSGG 2 cut(s) 635, 1014
NcoI CCATGG 1 cut(s) 1164
NdeII GATC 2 cut(s) 298, 904
NlaIII CATG 4 cut(s) 572, 856, 1132, 1168
NlaIV GGNNCC 6 cut(s) 78, 776, 814, 912, 1068, 1126
NmuCI GTSAC 2 cut(s) 17, 964
PfeI GAWTC 1 cut(s) 869
PflFI GACNNNGTC 1 cut(s) 746
PflMI CCANNNNNTGG 1 cut(s) 509
PfoI TCCNGGA 1 cut(s) 633
PkrI GCNGC 5 cut(s) 325, 720, 883, 958, 1197
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 1097
PspFI CCCAGC 1 cut(s) 885
PspGI CCWGG 1 cut(s) 1097
PspN4I GGNNCC 6 cut(s) 78, 776, 814, 912, 1068, 1126
PspPI GGNCC 1 cut(s) 1067
PstI CTGCAG 1 cut(s) 135
PsuI RGATCY 1 cut(s) 904
PsyI GACNNNGTC 1 cut(s) 746
PvuII CAGCTG 1 cut(s) 959
RsaI GTAC 3 cut(s) 10, 375, 459
RsaNI GTAC 3 cut(s) 9, 374, 458
SalI GTCGAC 1 cut(s) 1017
SaqAI TTAA 6 cut(s) 159, 425, 447, 713, 789, 1228
SatI GCNGC 5 cut(s) 324, 719, 882, 957, 1196
Sau3AI GATC 2 cut(s) 298, 904
Sau96I GGNCC 1 cut(s) 1067
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 3 cut(s) 635, 1014, 1099
SduI GDGCHC 3 cut(s) 412, 536, 770
SfaNI GCATC 3 cut(s) 195, 473, 668
SfcI CTRYAG 3 cut(s) 131, 654, 667
SinI GGWCC 1 cut(s) 1067
SmlI CTYRAG 2 cut(s) 453, 788
SmoI CTYRAG 2 cut(s) 453, 788
Sse9I AATT 7 cut(s) 259, 486, 537, 546, 696, 890, 924
SsiI CCGC 7 cut(s) 208, 517, 721, 901, 948, 1005, 1070
SspMI CTAG 2 cut(s) 12, 1155
StyD4I CCNGG 3 cut(s) 633, 1012, 1097
StyI CCWWGG 2 cut(s) 914, 1164
TaaI ACNGT 5 cut(s) 51, 331, 381, 558, 975
TaiI ACGT 2 cut(s) 19, 479
TaqI TCGA 1 cut(s) 1018
TasI AATT 7 cut(s) 259, 486, 537, 546, 696, 890, 924
TatI WGTACW 1 cut(s) 457
TfiI GAWTC 1 cut(s) 869
Tru1I TTAA 6 cut(s) 159, 425, 447, 713, 789, 1228
Tru9I TTAA 6 cut(s) 159, 425, 447, 713, 789, 1228
TscAI CASTG 3 cut(s) 135, 357, 696
TseFI GTSAC 2 cut(s) 17, 964
TseI GCWGC 5 cut(s) 323, 718, 881, 956, 1195
Tsp45I GTSAC 2 cut(s) 17, 964
TspDTI ATGAA 3 cut(s) 198, 1001, 1145
TspGWI ACGGA 2 cut(s) 825, 1107
TspRI CASTG 3 cut(s) 135, 357, 696
Tth111I GACNNNGTC 1 cut(s) 746
Van91I CCANNNNNTGG 1 cut(s) 509
Vha464I CTTAAG 1 cut(s) 788
VpaK11BI GGWCC 1 cut(s) 1067
XapI RAATTY 2 cut(s) 259, 696
XmiI GTMKAC 1 cut(s) 1018
XspI CTAG 2 cut(s) 12, 1155
ZraI GACGTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.