pycom07g17230

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013077
Physical Location & Seq
Forward (+)
19760193 .. 19760882
690 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g17230.1

Sequence Viewer

Length: 690 bp
ATGGTGTCTGCGAATGACCCGATCGAATCGTTTTTCAATTCGATTCAGCTGGTTAAGGAAGCGCTTTCGCCGCTCGAATTGGGCGTTCGAAAAGCGGCCAAGGACTTTGAGTGTTGCTGGGCAGGCCATAAGAATAAGTTAAATGCTGCTGAATTTGTTACCCAATTCAGTGGTGGTGGTAACAATGGTAAAGTTAAGATCTTTGGGGGAAAGAAGAAAGCTGGTGACTGTCTGATGGTTGGCGAGGAGAGAAAGAAAGGAATGTTGGTTAAGGTTCCGATAAAGGCGTTATTTGGGAAGTTTTCGCCAAATTCGGGGAATGGAAATCGACCTGAGTTGTCGAATAGTGAGTTGAGAGAGAAGGATTGTGATAAGGAGGATGGGTCTTGTGCGAATTGCATGCAGTTTGCTGTCACTTGGTCTGTGTTAGTTAATAGTTTTGTTCAGGCATTTCCTGGTCCATTCAAATTGGGTAAGAAGCGGGTCCAGAAAATGAGCGATGACGACAAAGCATGTTCTTGTAAAAAGCCAAAGGTTTTAGGTAACTTGAAACAGAGGGAGTCTAAGGGACAAAATGTTAAAATGATTCAGAATGAAGCCGTGTCACATGAAGAAGGAAAACATGTATCACTAGAATGCCTTATTGGTTTTGTTTTTGATCGAACTTACTCAGAATCTTCAGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

230

Amino Acids

25.15

Weight (kDa)

8.98

Isoelectric Point (pI)

39.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35800
fragaria_vesca FvH4_7g20100
malus_domestica MD01G1130600.v1.1 MD07G1178700.v1.1
prunus_persica Prupe.2G217800_v2.0.a1
pyrus_communis pycom01g13940 pycom07g17230 pycom07g17240
rosa_chinensis RchiOBHm_Chr1g0364061
rosa_laevigata RLG00000027520
rosa_multiflora Rmu_sc0000071.1_g000027 Rmu_sc0009677.1_g000022
rosa_roxburghii Rroxscaffold_4G00292680
rosa_rugosa Rorug01G0313100 Rorug01G0313200 Rorug01G0313200
rosa_samantha Rh1DG315200
rosa_wichuraiana Rw1G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 73
AciI CCGC 3 cut(s) 71, 95, 481
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 2 cut(s) 152, 310
AcuI CTGAAG 1 cut(s) 663
AfeI AGCGCT 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 3 cut(s) 37, 466, 550
AjnI CCWGG 1 cut(s) 454
AjuI GAANNNNNNNTTGG 4 cut(s) 248, 280, 627, 659
AluBI AGCT 2 cut(s) 49, 221
AluI AGCT 2 cut(s) 49, 221
Aor51HI AGCGCT 1 cut(s) 63
AoxI GGCC 2 cut(s) 96, 124
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 2 cut(s) 152, 310
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 458, 484
AsuHPI GGTGA 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 88
AvaII GGWCC 2 cut(s) 458, 484
BbvI GCAGC 1 cut(s) 133
BccI CCATC 2 cut(s) 229, 374
BceAI ACGGC 1 cut(s) 584
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 456
BfaI CTAG 1 cut(s) 632
BfoI RGCGCY 1 cut(s) 65
BglII AGATCT 1 cut(s) 198
BisI GCNGC 3 cut(s) 71, 96, 147
BlsI GCNGC 3 cut(s) 72, 97, 148
Bme1390I CCNGG 1 cut(s) 456
Bme18I GGWCC 2 cut(s) 458, 484
BmgT120I GGNCC 2 cut(s) 458, 484
BmiI GGNNCC 2 cut(s) 276, 485
BmrFI CCNGG 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 456
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 2 cut(s) 324, 684
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 2 cut(s) 98, 126
BsiEI CGRYCG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 582
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 2 cut(s) 98, 126
Bsp119I TTCGAA 1 cut(s) 88
Bsp143I GATC 3 cut(s) 21, 198, 658
BspACI CCGC 3 cut(s) 71, 95, 481
BspANI GGCC 2 cut(s) 98, 126
BspCNI CTCAG 2 cut(s) 325, 683
BspLI GGNNCC 2 cut(s) 276, 485
BspT104I TTCGAA 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 3 cut(s) 21, 198, 658
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 124, 401
BstDEI CTNAG 3 cut(s) 333, 564, 670
BstF5I GGATG 1 cut(s) 385
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 3 cut(s) 24, 201, 661
BstMBI GATC 3 cut(s) 21, 198, 658
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 2 cut(s) 70, 123
BstNI CCWGG 1 cut(s) 456
BstNSI RCATGY 3 cut(s) 403, 516, 626
BstSCI CCNGG 1 cut(s) 454
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 198
BstXI CCANNNNNNTGG 1 cut(s) 170
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 2 cut(s) 98, 126
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 124, 401
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 458, 484
CviAII CATG 4 cut(s) 400, 513, 608, 623
CviJI RGCY 6 cut(s) 49, 98, 126, 221, 529, 599
CviKI_1 RGCY 6 cut(s) 49, 98, 126, 221, 529, 599
DdeI CTNAG 3 cut(s) 333, 564, 670
DpnI GATC 3 cut(s) 23, 200, 660
DpnII GATC 3 cut(s) 21, 198, 658
EaeI YGGCCR 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 458, 484
Eco47III AGCGCT 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 4 cut(s) 403, 516, 611, 626
FaiI YATR 5 cut(s) 129, 401, 514, 609, 624
FaqI GGGAC 1 cut(s) 582
FatI CATG 4 cut(s) 399, 512, 607, 622
FauI CCCGC 1 cut(s) 474
Fnu4HI GCNGC 3 cut(s) 71, 96, 147
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 3 cut(s) 71, 96, 147
FspBI CTAG 1 cut(s) 632
GlaI GCGC 1 cut(s) 63
GluI GCNGC 3 cut(s) 71, 96, 147
GsaI CCCAGC 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 2 cut(s) 98, 126
HhaI GCGC 1 cut(s) 64
Hin1II CATG 4 cut(s) 403, 516, 611, 626
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 5 cut(s) 26, 43, 560, 586, 674
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 5 cut(s) 234, 279, 591, 673, 682
Hpy188III TCNNGA 1 cut(s) 487
HpyAV CCTTC 2 cut(s) 355, 608
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 399, 403
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 123
HpyF3I CTNAG 3 cut(s) 333, 564, 670
Hsp92II CATG 4 cut(s) 403, 516, 611, 626
HspAI GCGC 1 cut(s) 62
Kzo9I GATC 3 cut(s) 21, 198, 658
LpnPI CCDG 9 cut(s) 35, 103, 108, 207, 345, 431, 441, 468, 500
Lsp1109I GCAGC 1 cut(s) 133
MaeI CTAG 1 cut(s) 632
MaeIII GTNAC 6 cut(s) 157, 179, 224, 412, 542, 603
MalI GATC 3 cut(s) 23, 200, 660
MbiI CCGCTC 1 cut(s) 73
MboI GATC 3 cut(s) 21, 198, 658
MboII GAAGA 3 cut(s) 226, 623, 669
MflI RGATCY 1 cut(s) 198
MluCI AATT 7 cut(s) 37, 77, 152, 164, 310, 394, 467
MlyI GAGTC 1 cut(s) 569
MnlI CCTC 4 cut(s) 238, 370, 549, 676
MseI TTAA 6 cut(s) 54, 140, 195, 270, 432, 579
MslI CAYNNNNRTG 1 cut(s) 634
MspA1I CMGCKG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 456
Mva1269I GAATGC 1 cut(s) 641
MvaI CCWGG 1 cut(s) 456
MwoI GCNNNNNNNGC 2 cut(s) 70, 123
NdeII GATC 3 cut(s) 21, 198, 658
NlaIII CATG 4 cut(s) 403, 516, 611, 626
NlaIV GGNNCC 2 cut(s) 276, 485
NmuCI GTSAC 3 cut(s) 224, 412, 603
NspI RCATGY 3 cut(s) 403, 516, 626
NspV TTCGAA 1 cut(s) 88
PaeI GCATGC 1 cut(s) 403
PciI ACATGT 1 cut(s) 622
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 641
PfeI GAWTC 4 cut(s) 26, 43, 586, 674
PkrI GCNGC 3 cut(s) 72, 97, 148
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PscI ACATGT 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 454
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 1 cut(s) 454
PspN4I GGNNCC 2 cut(s) 276, 485
PspPI GGNCC 2 cut(s) 458, 484
PsuI RGATCY 1 cut(s) 198
PvuI CGATCG 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 634
SaqAI TTAA 6 cut(s) 54, 140, 195, 270, 432, 579
SatI GCNGC 3 cut(s) 71, 96, 147
Sau3AI GATC 3 cut(s) 21, 198, 658
Sau96I GGNCC 2 cut(s) 458, 484
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 1 cut(s) 456
SetI ASST 7 cut(s) 51, 223, 276, 334, 537, 544, 687
SfuI TTCGAA 1 cut(s) 88
SinI GGWCC 2 cut(s) 458, 484
SmiMI CAYNNNNRTG 1 cut(s) 634
SphI GCATGC 1 cut(s) 403
Sse9I AATT 7 cut(s) 37, 77, 152, 164, 310, 394, 467
SsiI CCGC 3 cut(s) 71, 95, 481
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 7 cut(s) 24, 41, 75, 88, 328, 341, 661
TasI AATT 7 cut(s) 37, 77, 152, 164, 310, 394, 467
TauI GCSGC 2 cut(s) 73, 98
TfiI GAWTC 4 cut(s) 26, 43, 586, 674
Tru1I TTAA 6 cut(s) 54, 140, 195, 270, 432, 579
Tru9I TTAA 6 cut(s) 54, 140, 195, 270, 432, 579
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 3 cut(s) 224, 412, 603
TseI GCWGC 1 cut(s) 146
Tsp45I GTSAC 3 cut(s) 224, 412, 603
TspDTI ATGAA 2 cut(s) 609, 624
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 458, 484
XapI RAATTY 2 cut(s) 152, 310
XceI RCATGY 3 cut(s) 403, 516, 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.