Rorug01G0313200

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013077
Physical Location & Seq
Reverse (-)
43124810 .. 43128311
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0313200.1

Sequence Viewer

Length: 990 bp
ATGGCGGGAGCAGAAGCAAGGGCTGTGTGGCAGAGAACAGCTAATCGTTGCTTTGTCCAAGAAGATGCAAAAAGAGCTCCCAAATTAGCTTATTGTCAATCCTCATCTTCAACAACCAAGCAGGTGGATGCTGGGCCTGCAACTGCAACAGAAGGATTAGATCATCCTGGTGTTGGCTTCATGCCTATTAATAGGAATCGTTCATATTCCAATCTACCCCCGGACACAAGATGGTGGCTGCAAATGCAACCTAACTATGGCTACCAAAAAGATTTAACCTATGAACAGTTAAATGAGTTGGAGGCTGACATGGAAACACTGAGAGCTGGGTTTGTAGAACAAACATCCAAAAACAGTGAGTTCGACCAACATAAAGGAAAATTTACTGATGGTGATTGTATGAAGACAGGTTATGAAGTCCAAAAGAAAGATGTAGACGCTGAATATGGTGAGAACATACAGGAACTTCGGTACAAGGACATGAGGGAAACATATGAAAAAATGGGGATGGATACCATTGATTGCCCAGTTTCAGAACAGTCCAAGGAGTTGTCTTGTGAACCAGAATATCCTTGGATGGGAGGTGGGAGGACTGAACCTTGGTGGCGGACAACTGATAGAGATGAACTGGCCTCCTTGGTTGCACAAAAGTCACTTAACCATATTGAGAACTGTGATCTTCCCCCACCTCAGAAACTGTATCATAAGAGACATCCATATGCTGCTCATATTGGGTTTTCTGACCGCGATGGAATATTGGGGACATCTTTAGACAGGAAGGCTCAAGCCAGTGGTTTTTCCAGTATGACTACTCATGCGGGATATGCTGATACTGGGATAACACATGGAAAAAATGGAGATGCAGCTGATGAAGAGCACTCTGACACATCAATCAGGGATCTCTTAGATCTGCAACAACTTACTGAGGGTGACCCTACCAAAGCTCAGCTAATTGAAGCACTGTGCCATTCTCAAACACGGGCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

329

Amino Acids

37.09

Weight (kDa)

5.15

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35800
fragaria_vesca FvH4_7g20100
malus_domestica MD01G1130600.v1.1 MD07G1178700.v1.1
prunus_persica Prupe.2G217800_v2.0.a1
pyrus_communis pycom01g13940 pycom07g17230 pycom07g17240
rosa_chinensis RchiOBHm_Chr1g0364061
rosa_laevigata RLG00000027520
rosa_multiflora Rmu_sc0000071.1_g000027 Rmu_sc0009677.1_g000022
rosa_roxburghii Rroxscaffold_4G00292680
rosa_rugosa Rorug01G0313100 Rorug01G0313200 Rorug01G0313200
rosa_samantha Rh1DG315200
rosa_wichuraiana Rw1G028420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccI GTMKAC 1 cut(s) 435
AccII CGCG 1 cut(s) 747
AciI CCGC 4 cut(s) 5, 607, 745, 818
AclWI GGATC 1 cut(s) 906
AcsI RAATTY 1 cut(s) 380
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 3 cut(s) 173, 257, 578
AgsI TTSAA 2 cut(s) 111, 956
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 7 cut(s) 41, 77, 89, 326, 866, 944, 949
AluI AGCT 7 cut(s) 41, 77, 89, 326, 866, 944, 949
Alw21I GWGCWC 2 cut(s) 79, 879
Alw26I GTCTC 1 cut(s) 703
AlwI GGATC 1 cut(s) 906
AlwNI CAGNNNCTG 1 cut(s) 697
AoxI GGCC 2 cut(s) 134, 630
ApeKI GCWGC 3 cut(s) 238, 722, 863
ApoI RAATTY 1 cut(s) 380
AseI ATTAAT 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 3 cut(s) 404, 461, 941
BanII GRGCYC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 410
Bbv12I GWGCWC 2 cut(s) 79, 879
BbvI GCAGC 3 cut(s) 225, 709, 875
BccI CCATC 5 cut(s) 225, 383, 502, 571, 743
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 1 cut(s) 505
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 703
BfuAI ACCTGC 1 cut(s) 112
BfuI GTATCC 1 cut(s) 505
BglII AGATCT 1 cut(s) 907
BisI GCNGC 3 cut(s) 239, 723, 864
BlpI GCTNAGC 1 cut(s) 945
BlsI GCNGC 3 cut(s) 240, 724, 865
Bme1390I CCNGG 2 cut(s) 168, 221
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 2 cut(s) 168, 221
BmrI ACTGGG 2 cut(s) 521, 843
BmsI GCATC 3 cut(s) 55, 118, 850
BmuI ACTGGG 2 cut(s) 521, 843
BpiI GAAGAC 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 945
BpuEI CTTGAG 1 cut(s) 768
BpuMI CCSGG 1 cut(s) 221
BsaJI CCNNGG 5 cut(s) 219, 543, 572, 599, 636
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 257, 578
Bse1I ACTGG 5 cut(s) 527, 633, 789, 801, 838
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 5 cut(s) 219, 543, 572, 599, 636
BseGI GGATG 6 cut(s) 133, 163, 344, 513, 582, 712
BseLI CCNNNNNNNGG 3 cut(s) 173, 257, 578
BseMII CTCAG 4 cut(s) 311, 704, 915, 959
BseNI ACTGG 5 cut(s) 527, 633, 789, 801, 838
BseXI GCAGC 3 cut(s) 225, 709, 875
BseYI CCCAGC 2 cut(s) 131, 326
Bsh1236I CGCG 1 cut(s) 747
BshFI GGCC 2 cut(s) 136, 632
BsiHKAI GWGCWC 2 cut(s) 79, 879
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 3 cut(s) 173, 257, 578
BsmAI GTCTC 1 cut(s) 703
BsmFI GGGAC 1 cut(s) 775
BsnI GGCC 2 cut(s) 136, 632
Bsp1286I GDGCHC 2 cut(s) 79, 879
Bsp143I GATC 4 cut(s) 160, 676, 898, 907
Bsp1720I GCTNAGC 1 cut(s) 945
BspACI CCGC 4 cut(s) 5, 607, 745, 818
BspANI GGCC 2 cut(s) 136, 632
BspCNI CTCAG 4 cut(s) 312, 703, 916, 958
BspFNI CGCG 1 cut(s) 747
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 906
BspQI GCTCTTC 1 cut(s) 867
BsrI ACTGG 5 cut(s) 527, 633, 789, 801, 838
BssECI CCNNGG 5 cut(s) 219, 543, 572, 599, 636
BssMI GATC 4 cut(s) 160, 676, 898, 907
BssT1I CCWWGG 4 cut(s) 543, 572, 599, 636
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 6 cut(s) 288, 356, 540, 674, 699, 963
Bst6I CTCTTC 1 cut(s) 867
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 5 cut(s) 320, 690, 904, 924, 945
BstEII GGTNACC 1 cut(s) 929
BstF5I GGATG 6 cut(s) 133, 163, 344, 513, 582, 712
BstFNI CGCG 1 cut(s) 747
BstKTI GATC 4 cut(s) 163, 679, 901, 910
BstMAI GTCTC 1 cut(s) 703
BstMBI GATC 4 cut(s) 160, 676, 898, 907
BstMWI GCNNNNNNNGC 4 cut(s) 74, 137, 244, 824
BstNI CCWGG 1 cut(s) 168
BstPI GGTNACC 1 cut(s) 929
BstSCI CCNGG 2 cut(s) 166, 219
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 3 cut(s) 225, 709, 875
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 2 cut(s) 898, 907
BstXI CCANNNNNNTGG 1 cut(s) 124
BstYI RGATCY 2 cut(s) 898, 907
BsuI GTATCC 1 cut(s) 505
BsuRI GGCC 2 cut(s) 136, 632
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 6 cut(s) 133, 163, 344, 513, 582, 712
BtsIMutI CAGTG 4 cut(s) 317, 361, 796, 959
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 138
CaiI CAGNNNCTG 1 cut(s) 697
Cfr13I GGNCC 1 cut(s) 134
CseI GACGC 1 cut(s) 446
Csp6I GTAC 1 cut(s) 472
CviAII CATG 5 cut(s) 181, 310, 481, 815, 845
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 5 cut(s) 320, 690, 904, 924, 945
DpnI GATC 4 cut(s) 162, 678, 900, 909
DpnII GATC 4 cut(s) 160, 676, 898, 907
Eam1104I CTCTTC 1 cut(s) 867
EarI CTCTTC 1 cut(s) 867
EciI GGCGGA 1 cut(s) 622
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 4 cut(s) 543, 572, 599, 636
Eco24I GRGCYC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 77
Eco91I GGTNACC 1 cut(s) 929
EcoICRI GAGCTC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 929
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 4 cut(s) 543, 572, 599, 636
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 4 cut(s) 543, 572, 599, 636
FaeI CATG 5 cut(s) 184, 313, 484, 818, 848
FaqI GGGAC 1 cut(s) 775
FatI CATG 5 cut(s) 180, 309, 480, 814, 844
FauI CCCGC 1 cut(s) 811
FauNDI CATATG 2 cut(s) 493, 718
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 239, 723, 864
FokI GGATG 6 cut(s) 140, 150, 331, 520, 589, 699
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 3 cut(s) 239, 723, 864
GluI GCNGC 3 cut(s) 239, 723, 864
GsaI CCCAGC 2 cut(s) 135, 330
HaeIII GGCC 2 cut(s) 136, 632
HapII CCGG 1 cut(s) 221
HgaI GACGC 1 cut(s) 446
Hin1II CATG 5 cut(s) 184, 313, 484, 818, 848
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 221
HphI GGTGA 3 cut(s) 404, 461, 941
Hpy166II GTNNAC 2 cut(s) 436, 560
Hpy188I TCNGA 4 cut(s) 535, 693, 742, 883
Hpy8I GTNNAC 2 cut(s) 436, 560
HpyAV CCTTC 2 cut(s) 146, 772
HpyCH4III ACNGT 6 cut(s) 288, 356, 540, 674, 699, 963
HpyCH4V TGCA 8 cut(s) 68, 140, 146, 241, 247, 644, 863, 913
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 137, 244, 824
HpyF3I CTNAG 5 cut(s) 320, 690, 904, 924, 945
Hsp92II CATG 5 cut(s) 184, 313, 484, 818, 848
Kzo9I GATC 4 cut(s) 160, 676, 898, 907
LguI GCTCTTC 1 cut(s) 867
LmnI GCTCC 2 cut(s) 8, 82
Lsp1109I GCAGC 3 cut(s) 225, 709, 875
LweI GCATC 3 cut(s) 55, 118, 850
MaeIII GTNAC 2 cut(s) 651, 929
MalI GATC 4 cut(s) 162, 678, 900, 909
MboI GATC 4 cut(s) 160, 676, 898, 907
MboII GAAGA 5 cut(s) 74, 99, 415, 671, 884
MflI RGATCY 2 cut(s) 898, 907
MhlI GDGCHC 2 cut(s) 79, 879
MluCI AATT 3 cut(s) 83, 380, 951
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 8 cut(s) 112, 295, 477, 575, 582, 643, 699, 919
MseI TTAA 4 cut(s) 189, 275, 290, 657
MslI CAYNNNNRTG 2 cut(s) 168, 717
MspA1I CMGCKG 1 cut(s) 866
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 168, 221
MvaI CCWGG 1 cut(s) 168
MvnI CGCG 1 cut(s) 747
MwoI GCNNNNNNNGC 4 cut(s) 74, 137, 244, 824
NciI CCSGG 1 cut(s) 221
NdeI CATATG 2 cut(s) 493, 718
NdeII GATC 4 cut(s) 160, 676, 898, 907
NlaIII CATG 5 cut(s) 184, 313, 484, 818, 848
NmuCI GTSAC 2 cut(s) 651, 929
PaqCI CACCTGC 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 867
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 3 cut(s) 240, 724, 865
PshBI ATTAAT 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 166
PspEI GGTNACC 1 cut(s) 929
PspFI CCCAGC 2 cut(s) 131, 326
PspGI CCWGG 1 cut(s) 166
PspPI GGNCC 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 697
PsuI RGATCY 2 cut(s) 898, 907
PvuII CAGCTG 1 cut(s) 866
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 2 cut(s) 168, 717
SacI GAGCTC 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 867
SaqAI TTAA 4 cut(s) 189, 275, 290, 657
SatI GCNGC 3 cut(s) 239, 723, 864
Sau3AI GATC 4 cut(s) 160, 676, 898, 907
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 168, 221
SduI GDGCHC 2 cut(s) 79, 879
SfaNI GCATC 3 cut(s) 55, 118, 850
SmiMI CAYNNNNRTG 2 cut(s) 168, 717
SmlI CTYRAG 1 cut(s) 783
SmoI CTYRAG 1 cut(s) 783
Sse9I AATT 3 cut(s) 83, 380, 951
SsiI CCGC 4 cut(s) 5, 607, 745, 818
SspI AATATT 1 cut(s) 756
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 2 cut(s) 166, 219
StyI CCWWGG 4 cut(s) 543, 572, 599, 636
TaaI ACNGT 6 cut(s) 288, 356, 540, 674, 699, 963
TaqI TCGA 1 cut(s) 363
TasI AATT 3 cut(s) 83, 380, 951
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 4 cut(s) 189, 275, 290, 657
Tru9I TTAA 4 cut(s) 189, 275, 290, 657
TscAI CASTG 4 cut(s) 324, 361, 796, 966
TseFI GTSAC 2 cut(s) 651, 929
TseI GCWGC 3 cut(s) 238, 722, 863
Tsp45I GTSAC 2 cut(s) 651, 929
TspDTI ATGAA 8 cut(s) 169, 192, 297, 416, 429, 510, 639, 885
TspRI CASTG 4 cut(s) 324, 361, 796, 966
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 1 cut(s) 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 570
XmiI GTMKAC 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.