MD07G1247400.v1.1

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013706
Physical Location & Seq
Forward (+)
31675533 .. 31676468
936 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1247400.v1.1.491

Sequence Viewer

Length: 936 bp
ATGACCTGTTATCAAAAAACTGCAATCACTTTTTGGGATGAGCTTTGTGAAAGGCTTGGGGTGCCAAAGCTTCCAGGTTGGGTTAATCGTTTTGCGCATGCTGGTGATGCTGCTATGGAAGTTGCAGGAAACACTGCAGTACGGTTTAGACAAGCGAAGACAGAGATTGTTACAGCTAGCAAAGTAGCATATCGTTTCCTTGTGGGTGTTACTAATAACGCCACAGCTTCTCCCGAGTCTGCAGGAAATTCAAACAGAGGTGCTCCTAGATTTCAAGCAGCTTGGTTCAAAAACCTAATCACCACAGGAGCAAAGCCATCTAGTAGTTCAGATCTCGAGACCAAGGAAGAAGATGCACTCCGGCAGCACCAGCAGCCAGATGCAGAGCCGCAGCAGCAGCACAATAACGGAGATGTATCGTTGGTGAAATCACAGCCGTTGGTTAAGGTGTTGCAGTTGATACATGCGCAAGAGCATGGCTCATTGTTCGAGCGACGGTTTCCGGCCCAGGAAAGCGATAAGTACAAGAGCATTGTCCAGCAGCATGTAAACCTGGAAACTATACAAACAAAGCTCCGCAAGGACGCCTACTCATCCTGCTCTCTCTCCTTCTACCGAGACATGCTCCTCCTCTTCAACAAAGCCGTCGTCTTCTTCCCCAAATCCTCCCCCGGGTCAAGGACCGCTCACCAACTCCGCCGCCTTGTCTTGAATAAAATGAAGAAGAAGAATCCCAACCATGACCCTTCATCTGAGCCATCAGACTCCGTAGTTCCTGCACCCATCATTGTATGCCGCAAAAGGAGCTCCATTTCGTCAAAACCTTCCGCGGCTGCTTCTAGCTTTGGTCAGAATCTCAAAGGAGATGAGAAGGAGAAAGCAGCAGCTCCGGCAAAGCCTAAAGTTGCAGCGAATGAACAAGTGTTAAGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

312

Amino Acids

34.35

Weight (kDa)

9.71

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 149 - 229 9.3e-09 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 96, 468
AccB1I GGYRCC 1 cut(s) 61
AccBSI CCGCTC 1 cut(s) 686
AccII CGCG 1 cut(s) 830
AciI CCGC 8 cut(s) 389, 577, 684, 697, 700, 796, 828, 830
AcsI RAATTY 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 585
AfaI GTAC 2 cut(s) 141, 524
AfiI CCNNNNNNNGG 2 cut(s) 672, 678
AgsI TTSAA 5 cut(s) 252, 275, 289, 637, 712
AjnI CCWGG 3 cut(s) 73, 507, 552
AluBI AGCT 9 cut(s) 43, 70, 176, 227, 281, 574, 807, 843, 887
AluI AGCT 9 cut(s) 43, 70, 176, 227, 281, 574, 807, 843, 887
Alw21I GWGCWC 2 cut(s) 265, 809
Alw26I GTCTC 2 cut(s) 332, 612
Ama87I CYCGRG 3 cut(s) 233, 335, 671
AoxI GGCC 1 cut(s) 504
ApoI RAATTY 1 cut(s) 247
ArsI GACNNNNNNTTYG 2 cut(s) 633, 665
AspLEI GCGC 2 cut(s) 97, 469
AspS9I GGNCC 2 cut(s) 505, 681
AsuC2I CCSGG 2 cut(s) 672, 673
AsuHPI GGTGA 4 cut(s) 116, 292, 436, 680
AsuNHI GCTAGC 1 cut(s) 176
AvaI CYCGRG 3 cut(s) 233, 335, 671
AvaII GGWCC 1 cut(s) 681
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 809
BbsI GAAGAC 2 cut(s) 164, 643
Bbv12I GWGCWC 2 cut(s) 265, 809
BccI CCATC 3 cut(s) 325, 766, 791
BceAI ACGGC 2 cut(s) 421, 629
BciT130I CCWGG 3 cut(s) 75, 509, 554
BcnI CCSGG 2 cut(s) 672, 673
BcoDI GTCTC 2 cut(s) 332, 612
BfaI CTAG 4 cut(s) 177, 267, 321, 840
BfmI CTRYAG 2 cut(s) 135, 240
BglII AGATCT 1 cut(s) 331
Bme1390I CCNGG 5 cut(s) 75, 509, 554, 672, 673
Bme18I GGWCC 1 cut(s) 681
BmeT110I CYCGRG 3 cut(s) 233, 335, 671
BmgT120I GGNCC 2 cut(s) 505, 681
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 5 cut(s) 75, 509, 554, 672, 673
BmsI GCATC 3 cut(s) 97, 343, 370
BmtI GCTAGC 1 cut(s) 180
BpiI GAAGAC 2 cut(s) 164, 643
BplI GAGNNNNNCTC 4 cut(s) 464, 496, 609, 641
BpuMI CCSGG 2 cut(s) 672, 673
BsaHI GRCGYC 1 cut(s) 585
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 5 cut(s) 342, 507, 670, 671, 828
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bsc4I CCNNNNNNNGG 2 cut(s) 672, 678
BseBI CCWGG 3 cut(s) 75, 509, 554
BseDI CCNNGG 5 cut(s) 342, 507, 670, 671, 828
BseGI GGATG 2 cut(s) 43, 593
BseLI CCNNNNNNNGG 2 cut(s) 672, 678
BseMII CTCAG 1 cut(s) 744
BseRI GAGGAG 2 cut(s) 617, 620
BsgI GTGCAG 1 cut(s) 762
Bsh1236I CGCG 1 cut(s) 830
BshFI GGCC 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 61
BsiHKAI GWGCWC 2 cut(s) 265, 809
BsiHKCI CYCGRG 3 cut(s) 233, 335, 671
BsiSI CCGG 4 cut(s) 361, 503, 672, 890
BslI CCNNNNNNNGG 2 cut(s) 672, 678
BsmAI GTCTC 2 cut(s) 332, 612
BsnI GGCC 1 cut(s) 506
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 3 cut(s) 233, 335, 671
Bsp1286I GDGCHC 2 cut(s) 265, 809
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 8 cut(s) 389, 577, 684, 697, 700, 796, 828, 830
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 1 cut(s) 745
BspFNI CGCG 1 cut(s) 830
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 2 cut(s) 139, 244
BspOI GCTAGC 1 cut(s) 180
BspT107I GGYRCC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 686
BssECI CCNNGG 5 cut(s) 342, 507, 670, 671, 828
BssMI GATC 1 cut(s) 331
BssNI GRCGYC 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 3 cut(s) 75, 509, 554
Bst4CI ACNGT 2 cut(s) 144, 498
Bst6I CTCTTC 1 cut(s) 638
BstACI GRCGYC 1 cut(s) 585
BstC8I GCNNGC 2 cut(s) 99, 178
BstDEI CTNAG 1 cut(s) 753
BstDSI CCRYGG 1 cut(s) 828
BstF5I GGATG 2 cut(s) 43, 593
BstFNI CGCG 1 cut(s) 830
BstHHI GCGC 2 cut(s) 97, 469
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 2 cut(s) 332, 612
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 8 cut(s) 61, 107, 370, 373, 394, 397, 804, 890
BstNI CCWGG 3 cut(s) 75, 509, 554
BstNSI RCATGY 4 cut(s) 101, 467, 548, 625
BstSCI CCNGG 5 cut(s) 73, 507, 552, 670, 671
BstSFI CTRYAG 2 cut(s) 135, 240
BstUI CGCG 1 cut(s) 830
BstV2I GAAGAC 2 cut(s) 164, 643
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 828
BtsCI GGATG 2 cut(s) 43, 593
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 99, 178
CfoI GCGC 2 cut(s) 97, 469
Cfr13I GGNCC 2 cut(s) 505, 681
Cfr42I CCGCGG 1 cut(s) 831
Cfr9I CCCGGG 1 cut(s) 671
CseI GACGC 1 cut(s) 593
Csp6I GTAC 2 cut(s) 140, 523
CviAII CATG 6 cut(s) 98, 464, 476, 545, 622, 740
CviQI GTAC 2 cut(s) 140, 523
DdeI CTNAG 1 cut(s) 753
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
EciI GGCGGA 1 cut(s) 686
Ecl136II GAGCTC 1 cut(s) 807
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 809
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 681
Eco53kI GAGCTC 1 cut(s) 807
Eco88I CYCGRG 3 cut(s) 233, 335, 671
EcoICRI GAGCTC 1 cut(s) 807
EcoRII CCWGG 3 cut(s) 73, 507, 552
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 809
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 6 cut(s) 101, 467, 479, 548, 625, 743
FatI CATG 6 cut(s) 97, 463, 475, 544, 621, 739
FokI GGATG 2 cut(s) 50, 580
FriOI GRGCYC 1 cut(s) 809
FspBI CTAG 4 cut(s) 177, 267, 321, 840
FspI TGCGCA 2 cut(s) 96, 468
GlaI GCGC 2 cut(s) 96, 468
HaeIII GGCC 1 cut(s) 506
HapII CCGG 4 cut(s) 361, 503, 672, 890
HgaI GACGC 1 cut(s) 593
HhaI GCGC 2 cut(s) 97, 469
Hin1I GRCGYC 1 cut(s) 585
Hin1II CATG 6 cut(s) 101, 467, 479, 548, 625, 743
Hin6I GCGC 2 cut(s) 95, 467
HinP1I GCGC 2 cut(s) 95, 467
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 4 cut(s) 236, 730, 764, 853
HpaII CCGG 4 cut(s) 361, 503, 672, 890
HphI GGTGA 4 cut(s) 116, 292, 436, 680
Hpy166II GTNNAC 1 cut(s) 550
Hpy188I TCNGA 4 cut(s) 331, 754, 763, 852
Hpy188III TCNNGA 4 cut(s) 233, 335, 337, 709
Hpy8I GTNNAC 1 cut(s) 550
Hpy99I CGWCG 2 cut(s) 498, 650
HpyAV CCTTC 4 cut(s) 619, 756, 834, 865
HpyCH4III ACNGT 2 cut(s) 144, 498
HpyCH4V TGCA 9 cut(s) 23, 125, 137, 242, 356, 383, 454, 779, 908
HpyF10VI GCNNNNNNNGC 8 cut(s) 61, 107, 370, 373, 394, 397, 804, 890
HpyF3I CTNAG 1 cut(s) 753
Hsp92I GRCGYC 1 cut(s) 585
Hsp92II CATG 6 cut(s) 101, 467, 479, 548, 625, 743
HspAI GCGC 2 cut(s) 95, 467
KspI CCGCGG 1 cut(s) 831
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 7 cut(s) 268, 308, 579, 630, 804, 812, 892
LweI GCATC 3 cut(s) 97, 343, 370
MaeI CTAG 4 cut(s) 177, 267, 321, 840
MaeIII GTNAC 2 cut(s) 169, 208
MalI GATC 1 cut(s) 333
MbiI CCGCTC 1 cut(s) 686
MboI GATC 1 cut(s) 331
MboII GAAGA 9 cut(s) 169, 359, 362, 625, 643, 646, 733, 736, 739
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 2 cut(s) 265, 809
MluCI AATT 1 cut(s) 247
MlyI GAGTC 2 cut(s) 245, 758
MnlI CCTC 4 cut(s) 251, 638, 641, 676
MseI TTAA 3 cut(s) 84, 444, 926
MslI CAYNNNNRTG 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 4 cut(s) 361, 503, 672, 890
MspR9I CCNGG 5 cut(s) 75, 509, 554, 672, 673
MvaI CCWGG 3 cut(s) 75, 509, 554
MvnI CGCG 1 cut(s) 830
MwoI GCNNNNNNNGC 8 cut(s) 61, 107, 370, 373, 394, 397, 804, 890
NciI CCSGG 2 cut(s) 672, 673
NdeII GATC 1 cut(s) 331
NheI GCTAGC 1 cut(s) 176
NlaIII CATG 6 cut(s) 101, 467, 479, 548, 625, 743
NlaIV GGNNCC 1 cut(s) 63
NsbI TGCGCA 2 cut(s) 96, 468
NspI RCATGY 4 cut(s) 101, 467, 548, 625
PaeI GCATGC 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 335
PfeI GAWTC 2 cut(s) 730, 853
PleI GAGTC 2 cut(s) 244, 758
PpsI GAGTC 2 cut(s) 244, 758
Psp124BI GAGCTC 1 cut(s) 809
Psp6I CCWGG 3 cut(s) 73, 507, 552
PspGI CCWGG 3 cut(s) 73, 507, 552
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 505, 681
PstI CTGCAG 2 cut(s) 139, 244
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 2 cut(s) 141, 524
RsaNI GTAC 2 cut(s) 140, 523
RseI CAYNNNNRTG 1 cut(s) 102
SacI GAGCTC 1 cut(s) 809
SacII CCGCGG 1 cut(s) 831
SaqAI TTAA 3 cut(s) 84, 444, 926
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 2 cut(s) 505, 681
SchI GAGTC 2 cut(s) 245, 758
ScrFI CCNGG 5 cut(s) 75, 509, 554, 672, 673
SduI GDGCHC 2 cut(s) 265, 809
SfaNI GCATC 3 cut(s) 97, 343, 370
SfcI CTRYAG 2 cut(s) 135, 240
Sfr274I CTCGAG 1 cut(s) 335
Sfr303I CCGCGG 1 cut(s) 831
SgrBI CCGCGG 1 cut(s) 831
SinI GGWCC 1 cut(s) 681
SlaI CTCGAG 1 cut(s) 335
SmaI CCCGGG 1 cut(s) 673
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SphI GCATGC 1 cut(s) 101
Sse9I AATT 1 cut(s) 247
SsiI CCGC 8 cut(s) 389, 577, 684, 697, 700, 796, 828, 830
SspMI CTAG 4 cut(s) 177, 267, 321, 840
SstI GAGCTC 1 cut(s) 809
StyD4I CCNGG 5 cut(s) 73, 507, 552, 670, 671
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 144, 498
TaqI TCGA 2 cut(s) 336, 489
TasI AATT 1 cut(s) 247
TatI WGTACW 1 cut(s) 522
TauI GCSGC 4 cut(s) 391, 702, 798, 833
TfiI GAWTC 2 cut(s) 730, 853
Tru1I TTAA 3 cut(s) 84, 444, 926
Tru9I TTAA 3 cut(s) 84, 444, 926
TscAI CASTG 1 cut(s) 139
TspDTI ATGAA 3 cut(s) 734, 738, 930
TspGWI ACGGA 2 cut(s) 423, 757
TspMI CCCGGG 1 cut(s) 671
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 681
XapI RAATTY 1 cut(s) 247
XceI RCATGY 4 cut(s) 101, 467, 548, 625
XhoI CTCGAG 1 cut(s) 335
XmaI CCCGGG 1 cut(s) 671
XspI CTAG 4 cut(s) 177, 267, 321, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.