Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013706

Physical Location & Seq

Genomic Coordinates Forward (+)

308197 .. 313636

Gene Structure 5440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1986 bp

ATGGAACGATATCACGACGGAGACGGAGACGTCAGGATGAAAGGTGGCGGCACTAGTGATAGTGGAGAAGAGGTTGAGTCGTGGGGGACGTGGGAGGAGCTCTTGCTAGCATGCGCGGTGAAGCGTCACGGCGTCAAGGACTGGGAGTCGGTGGCCATGGAAGTCCAAGGCAAGACCTCTCTCCCGCAACTCCACACCACCGCCTACAACTGCAAGCGGAAGTATCAGGATCTCCAACGCCGATTCCACCAAAGCCATCATGACCAGCAAGCCGACCAGGACCCTATCCCTTGGCTCCACCACCTCAAAGACCTACGCCTCGCTCAGCTTCGTCAGGACCTCCATCGCTACGACGTCTCTATCCTGTCGTTGCAGTTGAAGGTGAAGAAGTTAGAGGAAGAAGAGAAAGACGACGACCCCAAACCAGATCTGGAGGAACGGGACTCCAAGGGACGCAGCCGCACCAGATCAGAAGAAGAAGAAGAAGACGACAAAAAGAGACCGGACGAACCGGACCGGTTCAAACACGAGAACCAGTCGGTGAACGGCTCCAATTCCACCTGCTCCAAAACCCACGAGCACGAGGAGGACCACAATCATAAAAAGTCTCCGACTGAACCGGACCCGCTCCCGGCCGGTTCGGCTCAACCCTCCAAAGGCCGCTCGGACTCCGACGACGACTCGGATAAAGGAAGCTGTGAAACCGTCGCCAAGAAGCGCCGGCGGCAAGAGAGGGGCGCGGCGGCGTCGCGTGAGTCGGGGAGTAGTGAGGCGCAGAGTTCGGCGAGCTTGACGCGGAAACGACGCCGTAAATTGGAATTGGAAGACCAGCCTGACGAACGAGTATCGGGGAAATCACAGCCGTTGGCTGCCATTCTGCAGATGATCCGAGCGCATCAGCATGGCTCATTGTTCCAGCGACGGCTTCCAAGCCAGGAAAGTGACAAGTATACGAGTATGGTCCGGCAGCATGTGGACCTAGAGACGATACAAACAAAGCTCCAAAAGGACTCCTATTCCACGCTCACATTCTACCGGGATCTCCTTCTCCTCTTCTCCAACGCCGTCGTTTTCTTCCCCAAATCCTCAACTGAATCCGTCGCTGCCCACCAACTCCGACGCCTTGTCTTGAACGAAATGAAGAAGAGAAATCTAATCACCAGGCCCGACCCTTCATCTGGGCCGTCAGACTCATTGCCCTCCCAAACAACGATTCCAACAGACTCGTTGCTTGCCAAACACAAGTCAACAGCACCCATTATTGTCTGCCGCAAACGAAGCTCAATCTCATCAAAGCCTTCTACCATTGCTCGTAAGGCTAGTACTACCACTGATCACCCAGCAGCAGAAGCGCCAGCAGCTTTTGATATTAAACCACCCAATAACAGTAAGAAGACCTCTAACTTAAACAATGTAGATGAAGATAATGGATCAAAAGAGAAACCTGTAACTGGAACCAGAAGCTCAAGAAGGACGACAACTACTCATCATCACGACAATAATGCTTCCTCCACCAAGAAAAAAATTTCAAGCCCTGCGGAAACTCCCAAAGCAGGTAAGAAGAGGAAAACCCCAGAGCCAGCGACAGCATCGGACAAAAAGAGAAGTGGAGCAGCGGCAGCGGCAGCCGATTTCCTGAAAAGAATAAAGCGTAATTCTCCTGCGCAGCAGAAACTGAAATTGAAAGGTGGGACTGGCTCTAGTACAAGTACTAGAGGTCCAGAGCAGAAGAAGAGGGGAGGTAATAAGGCTGACAAGGTTAAAGGAAGGGTGTCAAGGCAAAGTGGTGGTGAAAATAAGAAACTAGTGAAAGAAGAAAGCAGTCCATCCAAGCGAAGTATAGGAAGACCGTCCAAGAGGGCAGCTGAGACAGCAGCGGCTGCCAATGTAGTTTCACCGAAGCGATCAAGGGAAAATGGGGGGAAGCAGCAGCAGCAGCAAGAAGCTTCTAAGCGGCCCAAAAAACGATCCCGAAGTAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

661

Amino Acids

73.73

Weight (kDa)

9.77

Isoelectric Point (pI)

69.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	27 - 76	1.3e-06	Myb-like DNA-binding domain
Bromodomain	PF00439	291 - 370	1.7e-10	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00180 FvH4_7g00180
malus_domestica	MD02G1318400.v1.1 MD07G1002900.v1.1 MD07G1247400.v1.1
prunus_persica	Prupe.2G004300_v2.0.a1
pyrus_communis	pycom02g26660 pycom07g00290
rosa_chinensis	RchiOBHm_Chr1g0313431
rosa_laevigata	RLG00000030797
rosa_roxburghii	Rroxscaffold_4G00332190
rosa_rugosa	RorugPtG0005000.1
rosa_samantha	Rh1AG003600 Rh1BG000500 Rh1CG001100 Rh1CG007900 Rh1DG003400
rosa_wichuraiana	Rw1G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	569
AasI	GACNNNNNNGTC	1 cut(s)	29
AatII	GACGTC	2 cut(s)	33, 357
Acc16I	TGCGCA	1 cut(s)	1665
Acc36I	ACCTGC	2 cut(s)	569, 1544
AccBSI	CCGCTC	2 cut(s)	628, 663
AccI	GTMKAC	1 cut(s)	950
AccII	CGCG	4 cut(s)	116, 740, 751, 796
AclWI	GGATC	5 cut(s)	237, 880, 1047, 1438, 1962
AcoI	YGGCCR	2 cut(s)	153, 633
AcsI	RAATTY	1 cut(s)	1524
AcyI	GRCGYC	6 cut(s)	30, 132, 354, 746, 805, 1120
AfaI	GTAC	3 cut(s)	1324, 1705, 1711
AfiI	CCNNNNNNNGG	6 cut(s)	631, 656, 814, 1178, 1451, 1553
AgeI	ACCGGT	1 cut(s)	516
AgsI	TTSAA	5 cut(s)	379, 523, 1132, 1530, 1684
AhdI	GACNNNNNGTC	2 cut(s)	145, 1124
AhlI	ACTAGT	2 cut(s)	53, 1804
AjiI	CACGTC	1 cut(s)	90
AjnI	CCWGG	3 cut(s)	276, 933, 1160
AjuI	GAANNNNNNNTTGG	2 cut(s)	1197, 1229
Alw21I	GWGCWC	2 cut(s)	102, 582
Alw26I	GTCTC	7 cut(s)	15, 21, 361, 493, 612, 977, 1862
AlwI	GGATC	5 cut(s)	237, 880, 1047, 1438, 1962
AlwNI	CAGNNNCTG	2 cut(s)	1675, 1880
AoxI	GGCC	6 cut(s)	153, 633, 658, 1163, 1181, 1955
ApoI	RAATTY	1 cut(s)	1524
AsiGI	ACCGGT	1 cut(s)	516
AspLEI	GCGC	7 cut(s)	116, 720, 740, 775, 895, 1354, 1666
AsuC2I	CCSGG	2 cut(s)	632, 1037
AsuHPI	GGTGA	7 cut(s)	130, 394, 553, 1150, 1328, 1802, 1887
AsuNHI	GCTAGC	1 cut(s)	106
AvaII	GGWCC	8 cut(s)	280, 337, 514, 589, 622, 961, 976, 1718
BalI	TGGCCA	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	102
BauI	CACGAG	3 cut(s)	527, 575, 581
BbsI	GAAGAC	4 cut(s)	492, 831, 1400, 1852
Bbv12I	GWGCWC	2 cut(s)	102, 582
BccI	CCATC	3 cut(s)	264, 351, 1834
BceAI	ACGGC	7 cut(s)	145, 562, 792, 847, 938, 1049, 1168
BcgI	CGANNNNNNTGC	2 cut(s)	1484, 1518
BciT130I	CCWGG	3 cut(s)	278, 935, 1162
BclI	TGATCA	1 cut(s)	1333
BcnI	CCSGG	2 cut(s)	632, 1037
BcoDI	GTCTC	7 cut(s)	15, 21, 361, 493, 612, 977, 1862
BcuI	ACTAGT	2 cut(s)	53, 1804
BfaI	CTAG	7 cut(s)	54, 107, 980, 1320, 1701, 1713, 1805
BfmI	CTRYAG	1 cut(s)	878
BfoI	RGCGCY	2 cut(s)	721, 1355
BfuAI	ACCTGC	2 cut(s)	569, 1544
BglI	GCCNNNNNGGC	1 cut(s)	641
BglII	AGATCT	1 cut(s)	427
BlpI	GCTNAGC	1 cut(s)	324
BmcAI	AGTACT	2 cut(s)	1324, 1711
Bme1390I	CCNGG	5 cut(s)	278, 632, 935, 1037, 1162
Bme18I	GGWCC	8 cut(s)	280, 337, 514, 589, 622, 961, 976, 1718
BmeRI	GACNNNNNGTC	2 cut(s)	145, 1124
BmgBI	CACGTC	1 cut(s)	90
BmiI	GGNNCC	5 cut(s)	282, 296, 550, 624, 1456
BmrFI	CCNGG	5 cut(s)	278, 632, 935, 1037, 1162
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	904, 1598
BmtI	GCTAGC	1 cut(s)	110
BmuI	ACTGGG	1 cut(s)	151
BpiI	GAAGAC	4 cut(s)	492, 831, 1400, 1852
BpmI	CTGGAG	1 cut(s)	452
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	1450
BpuMI	CCSGG	2 cut(s)	632, 1037
BsaHI	GRCGYC	6 cut(s)	30, 132, 354, 746, 805, 1120
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	4 cut(s)	156, 166, 290, 447
BsaWI	WCCGGW	4 cut(s)	502, 511, 516, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	6 cut(s)	631, 656, 814, 1178, 1451, 1553
Bse118I	RCCGGY	3 cut(s)	516, 635, 720
Bse1I	ACTGG	4 cut(s)	146, 535, 1456, 1699
Bse3DI	GCAATG	2 cut(s)	1193, 1305
BseBI	CCWGG	3 cut(s)	278, 935, 1162
BseDI	CCNNGG	4 cut(s)	156, 166, 290, 447
BseGI	GGATG	2 cut(s)	42, 1826
BseLI	CCNNNNNNNGG	6 cut(s)	631, 656, 814, 1178, 1451, 1553
BseMI	GCAATG	2 cut(s)	1193, 1305
BseMII	CTCAG	2 cut(s)	338, 1857
BseNI	ACTGG	4 cut(s)	146, 535, 1456, 1699
BseRI	GAGGAG	3 cut(s)	110, 599, 1040
BseX3I	CGGCCG	1 cut(s)	633
BseYI	CCCAGC	1 cut(s)	1339
Bsh1236I	CGCG	4 cut(s)	116, 740, 751, 796
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	6 cut(s)	155, 635, 660, 1165, 1183, 1957
BshTI	ACCGGT	1 cut(s)	516
BsiEI	CGRYCG	1 cut(s)	636
BsiHKAI	GWGCWC	2 cut(s)	102, 582
BsiSI	CCGG	9 cut(s)	503, 512, 517, 620, 632, 636, 721, 964, 1036
BslFI	GGGAC	4 cut(s)	100, 455, 465, 1705
BslI	CCNNNNNNNGG	6 cut(s)	631, 656, 814, 1178, 1451, 1553
BsmAI	GTCTC	7 cut(s)	15, 21, 361, 493, 612, 977, 1862
BsmBI	CGTCTC	4 cut(s)	15, 21, 361, 977
BsmFI	GGGAC	4 cut(s)	100, 455, 465, 1705
BsnI	GGCC	6 cut(s)	155, 635, 660, 1165, 1183, 1957
Bso31I	GGTCTC	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	102, 582
Bsp143I	GATC	9 cut(s)	229, 427, 467, 885, 1039, 1333, 1430, 1904, 1967
Bsp1720I	GCTNAGC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	156
BspANI	GGCC	6 cut(s)	155, 635, 660, 1165, 1183, 1957
BspCNI	CTCAG	2 cut(s)	337, 1858
BspFNI	CGCG	4 cut(s)	116, 740, 751, 796
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	5 cut(s)	282, 296, 550, 624, 1456
BspMAI	CTGCAG	1 cut(s)	882
BspMI	ACCTGC	2 cut(s)	569, 1544
BspOI	GCTAGC	1 cut(s)	110
BspPI	GGATC	5 cut(s)	237, 880, 1047, 1438, 1962
BspTNI	GGTCTC	1 cut(s)	493
BsrBI	CCGCTC	2 cut(s)	628, 663
BsrDI	GCAATG	2 cut(s)	1193, 1305
BsrFI	RCCGGY	3 cut(s)	516, 635, 720
BsrI	ACTGG	4 cut(s)	146, 535, 1456, 1699
BssAI	RCCGGY	3 cut(s)	516, 635, 720
BssECI	CCNNGG	4 cut(s)	156, 166, 290, 447
BssMI	GATC	9 cut(s)	229, 427, 467, 885, 1039, 1333, 1430, 1904, 1967
BssNAI	GTATAC	1 cut(s)	951
BssNI	GRCGYC	6 cut(s)	30, 132, 354, 746, 805, 1120
BssSI	CACGAG	3 cut(s)	527, 575, 581
BssT1I	CCWWGG	4 cut(s)	156, 166, 290, 447
Bst1107I	GTATAC	1 cut(s)	951
Bst2BI	CACGAG	3 cut(s)	527, 575, 581
Bst2UI	CCWGG	3 cut(s)	278, 935, 1162
Bst4CI	ACNGT	3 cut(s)	706, 1388, 1851
Bst6I	CTCTTC	6 cut(s)	63, 396, 1058, 1139, 1556, 1727
BstACI	GRCGYC	6 cut(s)	30, 132, 354, 746, 805, 1120
BstAPI	GCANNNNNTGC	1 cut(s)	1880
BstC8I	GCNNGC	9 cut(s)	108, 112, 215, 270, 722, 787, 1233, 1356, 1581
BstDEI	CTNAG	3 cut(s)	324, 1866, 1950
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	42, 1826
BstFNI	CGCG	4 cut(s)	116, 740, 751, 796
BstH2I	RGCGCY	2 cut(s)	721, 1355
BstHHI	GCGC	7 cut(s)	116, 720, 740, 775, 895, 1354, 1666
BstKTI	GATC	9 cut(s)	232, 430, 470, 888, 1042, 1336, 1433, 1907, 1970
BstMAI	GTCTC	7 cut(s)	15, 21, 361, 493, 612, 977, 1862
BstMBI	GATC	9 cut(s)	229, 427, 467, 885, 1039, 1333, 1430, 1904, 1967
BstMCI	CGRYCG	1 cut(s)	636
BstNI	CCWGG	3 cut(s)	278, 935, 1162
BstNSI	RCATGY	2 cut(s)	114, 974
BstSCI	CCNGG	5 cut(s)	276, 630, 933, 1035, 1160
BstSFI	CTRYAG	1 cut(s)	878
BstUI	CGCG	4 cut(s)	116, 740, 751, 796
BstV2I	GAAGAC	4 cut(s)	492, 831, 1400, 1852
BstX2I	RGATCY	3 cut(s)	229, 427, 1039
BstYI	RGATCY	3 cut(s)	229, 427, 1039
BstZ17I	GTATAC	1 cut(s)	951
BstZI	CGGCCG	1 cut(s)	633
BsuRI	GGCC	6 cut(s)	155, 635, 660, 1165, 1183, 1957
BtgI	CCRYGG	1 cut(s)	156
BtgZI	GCGATG	1 cut(s)	329
BtrI	CACGTC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	42, 1826
BtsIMutI	CAGTG	1 cut(s)	1329
BveI	ACCTGC	2 cut(s)	569, 1544
Cac8I	GCNNGC	9 cut(s)	108, 112, 215, 270, 722, 787, 1233, 1356, 1581
CaiI	CAGNNNCTG	2 cut(s)	1675, 1880
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	7 cut(s)	116, 720, 740, 775, 895, 1354, 1666
Cfr10I	RCCGGY	3 cut(s)	516, 635, 720
CpoI	CGGWCCG	1 cut(s)	514
CseI	GACGC	7 cut(s)	113, 121, 462, 735, 802, 813, 1128
Csp6I	GTAC	3 cut(s)	1323, 1704, 1710
CspAI	ACCGGT	1 cut(s)	516
CspI	CGGWCCG	1 cut(s)	514
CviAII	CATG	5 cut(s)	111, 157, 260, 902, 971
CviQI	GTAC	3 cut(s)	1323, 1704, 1710
DdeI	CTNAG	3 cut(s)	324, 1866, 1950
DpnI	GATC	9 cut(s)	231, 429, 469, 887, 1041, 1335, 1432, 1906, 1969
DpnII	GATC	9 cut(s)	229, 427, 467, 885, 1039, 1333, 1430, 1904, 1967
DrdI	GACNNNNNNGTC	1 cut(s)	29
DriI	GACNNNNNGTC	2 cut(s)	145, 1124
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	2 cut(s)	153, 633
EagI	CGGCCG	1 cut(s)	633
Eam1104I	CTCTTC	6 cut(s)	63, 396, 1058, 1139, 1556, 1727
Eam1105I	GACNNNNNGTC	2 cut(s)	145, 1124
EarI	CTCTTC	6 cut(s)	63, 396, 1058, 1139, 1556, 1727
Ecl136II	GAGCTC	1 cut(s)	100
EclXI	CGGCCG	1 cut(s)	633
Eco130I	CCWWGG	4 cut(s)	156, 166, 290, 447
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	493
Eco32I	GATATC	1 cut(s)	11
Eco47I	GGWCC	8 cut(s)	280, 337, 514, 589, 622, 961, 976, 1718
Eco52I	CGGCCG	1 cut(s)	633
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	2 cut(s)	280, 337
EcoRII	CCWGG	3 cut(s)	276, 933, 1160
EcoRV	GATATC	1 cut(s)	11
EcoT14I	CCWWGG	4 cut(s)	156, 166, 290, 447
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	4 cut(s)	156, 166, 290, 447
Esp3I	CGTCTC	4 cut(s)	15, 21, 361, 977
FaeI	CATG	5 cut(s)	114, 160, 263, 905, 974
FaiI	YATR	9 cut(s)	112, 158, 261, 600, 903, 951, 959, 972, 1841
FaqI	GGGAC	4 cut(s)	100, 455, 465, 1705
FatI	CATG	5 cut(s)	110, 156, 259, 901, 970
FauI	CCCGC	2 cut(s)	192, 633
FbaI	TGATCA	1 cut(s)	1333
FblI	GTMKAC	1 cut(s)	950
FokI	GGATG	2 cut(s)	49, 1813
FriOI	GRGCYC	1 cut(s)	102
FspBI	CTAG	7 cut(s)	54, 107, 980, 1320, 1701, 1713, 1805
FspI	TGCGCA	1 cut(s)	1665
GlaI	GCGC	7 cut(s)	115, 719, 739, 774, 894, 1353, 1665
GsaI	CCCAGC	1 cut(s)	1343
GsuI	CTGGAG	1 cut(s)	452
HaeII	RGCGCY	2 cut(s)	721, 1355
HaeIII	GGCC	6 cut(s)	155, 635, 660, 1165, 1183, 1957
HapII	CCGG	9 cut(s)	503, 512, 517, 620, 632, 636, 721, 964, 1036
HgaI	GACGC	7 cut(s)	113, 121, 462, 735, 802, 813, 1128
HhaI	GCGC	7 cut(s)	116, 720, 740, 775, 895, 1354, 1666
Hin1I	GRCGYC	6 cut(s)	30, 132, 354, 746, 805, 1120
Hin1II	CATG	5 cut(s)	114, 160, 263, 905, 974
Hin6I	GCGC	7 cut(s)	114, 718, 738, 773, 893, 1352, 1664
HinP1I	GCGC	7 cut(s)	114, 718, 738, 773, 893, 1352, 1664
HincII	GTYRAC	1 cut(s)	1248
HindII	GTYRAC	1 cut(s)	1248
HindIII	AAGCTT	1 cut(s)	1944
HpaII	CCGG	9 cut(s)	503, 512, 517, 620, 632, 636, 721, 964, 1036
HphI	GGTGA	7 cut(s)	130, 394, 553, 1150, 1328, 1802, 1887
Hpy166II	GTNNAC	4 cut(s)	544, 951, 976, 1248
Hpy188I	TCNGA	9 cut(s)	472, 612, 667, 673, 685, 890, 1118, 1189, 1594
Hpy8I	GTNNAC	4 cut(s)	544, 951, 976, 1248
HpyAV	CCTTC	6 cut(s)	373, 1055, 1182, 1308, 1464, 1761
HpyCH4III	ACNGT	3 cut(s)	706, 1388, 1851
HpyCH4IV	ACGT	3 cut(s)	30, 89, 354
HpyCH4V	TGCA	3 cut(s)	213, 373, 880
HpyF3I	CTNAG	3 cut(s)	324, 1866, 1950
HpySE526I	ACGT	3 cut(s)	30, 89, 354
Hsp92I	GRCGYC	6 cut(s)	30, 132, 354, 746, 805, 1120
Hsp92II	CATG	5 cut(s)	114, 160, 263, 905, 974
HspAI	GCGC	7 cut(s)	114, 718, 738, 773, 893, 1352, 1664
KroI	GCCGGC	1 cut(s)	720
KroNI	GCCGGC	1 cut(s)	722
Ksp22I	TGATCA	1 cut(s)	1333
Kzo9I	GATC	9 cut(s)	229, 427, 467, 885, 1039, 1333, 1430, 1904, 1967
LmnI	GCTCC	7 cut(s)	97, 300, 554, 569, 633, 1005, 1610
LweI	GCATC	2 cut(s)	904, 1598
MaeI	CTAG	7 cut(s)	54, 107, 980, 1320, 1701, 1713, 1805
MaeII	ACGT	3 cut(s)	30, 89, 354
MaeIII	GTNAC	3 cut(s)	125, 941, 1447
MalI	GATC	9 cut(s)	231, 429, 469, 887, 1041, 1335, 1432, 1906, 1969
MbiI	CCGCTC	2 cut(s)	628, 663
MboI	GATC	9 cut(s)	229, 427, 467, 885, 1039, 1333, 1430, 1904, 1967
MflI	RGATCY	3 cut(s)	229, 427, 1039
MhlI	GDGCHC	2 cut(s)	102, 582
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	6 cut(s)	553, 812, 818, 1524, 1654, 1679
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	9 cut(s)	86, 155, 437, 662, 674, 764, 1004, 1184, 1217
MmeI	TCCRAC	6 cut(s)	259, 635, 696, 1083, 1141, 1241
Mox20I	TGGCCA	1 cut(s)	155
MreI	CGCCGGCG	1 cut(s)	720
MroNI	GCCGGC	1 cut(s)	720
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	3 cut(s)	1371, 1406, 1761
MslI	CAYNNNNRTG	1 cut(s)	900
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	4 cut(s)	1616, 1622, 1865, 1877
MspI	CCGG	9 cut(s)	503, 512, 517, 620, 632, 636, 721, 964, 1036
MspR9I	CCNGG	5 cut(s)	278, 632, 935, 1037, 1162
MvaI	CCWGG	3 cut(s)	278, 935, 1162
MvnI	CGCG	4 cut(s)	116, 740, 751, 796
NaeI	GCCGGC	1 cut(s)	722
NciI	CCSGG	2 cut(s)	632, 1037
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	9 cut(s)	229, 427, 467, 885, 1039, 1333, 1430, 1904, 1967
NgoMIV	GCCGGC	1 cut(s)	720
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	5 cut(s)	114, 160, 263, 905, 974
NlaIV	GGNNCC	5 cut(s)	282, 296, 550, 624, 1456
NmuCI	GTSAC	2 cut(s)	125, 941
NsbI	TGCGCA	1 cut(s)	1665
NspI	RCATGY	2 cut(s)	114, 974
PaeI	GCATGC	1 cut(s)	114
PagI	TCATGA	1 cut(s)	259
PaqCI	CACCTGC	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	722
PfeI	GAWTC	3 cut(s)	243, 1094, 1213
PinAI	ACCGGT	1 cut(s)	516
PleI	GAGTC	9 cut(s)	85, 154, 437, 662, 674, 763, 1004, 1184, 1217
PpsI	GAGTC	9 cut(s)	85, 154, 437, 662, 674, 763, 1004, 1184, 1217
PpuMI	RGGWCCY	2 cut(s)	280, 337
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	2 cut(s)	280, 337
Psp6I	CCWGG	3 cut(s)	276, 933, 1160
PspFI	CCCAGC	1 cut(s)	1339
PspGI	CCWGG	3 cut(s)	276, 933, 1160
PspN4I	GGNNCC	5 cut(s)	282, 296, 550, 624, 1456
PspPPI	RGGWCCY	2 cut(s)	280, 337
PstI	CTGCAG	1 cut(s)	882
PstNI	CAGNNNCTG	2 cut(s)	1675, 1880
PsuI	RGATCY	3 cut(s)	229, 427, 1039
PvuII	CAGCTG	1 cut(s)	1865
RsaI	GTAC	3 cut(s)	1324, 1705, 1711
RsaNI	GTAC	3 cut(s)	1323, 1704, 1710
RseI	CAYNNNNRTG	1 cut(s)	900
Rsr2I	CGGWCCG	1 cut(s)	514
RsrII	CGGWCCG	1 cut(s)	514
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	1371, 1406, 1761
Sau3AI	GATC	9 cut(s)	229, 427, 467, 885, 1039, 1333, 1430, 1904, 1967
ScaI	AGTACT	2 cut(s)	1324, 1711
SchI	GAGTC	9 cut(s)	86, 155, 437, 662, 674, 764, 1004, 1184, 1217
ScrFI	CCNGG	5 cut(s)	278, 632, 935, 1037, 1162
SduI	GDGCHC	2 cut(s)	102, 582
SfaNI	GCATC	2 cut(s)	904, 1598
SfcI	CTRYAG	1 cut(s)	878
SgrAI	CRCCGGYG	1 cut(s)	720
SinI	GGWCC	8 cut(s)	280, 337, 514, 589, 622, 961, 976, 1718
SmiMI	CAYNNNNRTG	1 cut(s)	900
SmlI	CTYRAG	1 cut(s)	1465
SmoI	CTYRAG	1 cut(s)	1465
SpeI	ACTAGT	2 cut(s)	53, 1804
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	6 cut(s)	553, 812, 818, 1524, 1654, 1679
SspMI	CTAG	7 cut(s)	54, 107, 980, 1320, 1701, 1713, 1805
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	5 cut(s)	276, 630, 933, 1035, 1160
StyI	CCWWGG	4 cut(s)	156, 166, 290, 447
TaaI	ACNGT	3 cut(s)	706, 1388, 1851
TaiI	ACGT	3 cut(s)	33, 92, 357
TasI	AATT	6 cut(s)	553, 812, 818, 1524, 1654, 1679
TatI	WGTACW	3 cut(s)	1322, 1703, 1709
TfiI	GAWTC	3 cut(s)	243, 1094, 1213
Tru1I	TTAA	3 cut(s)	1371, 1406, 1761
Tru9I	TTAA	3 cut(s)	1371, 1406, 1761
TscAI	CASTG	1 cut(s)	1336
TseFI	GTSAC	2 cut(s)	125, 941
Tsp45I	GTSAC	2 cut(s)	125, 941
TspDTI	ATGAA	4 cut(s)	53, 1154, 1164, 1434
TspGWI	ACGGA	3 cut(s)	33, 39, 1087
TspRI	CASTG	1 cut(s)	1336
VpaK11BI	GGWCC	8 cut(s)	280, 337, 514, 589, 622, 961, 976, 1718
XapI	RAATTY	1 cut(s)	1524
XceI	RCATGY	2 cut(s)	114, 974
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	950
XspI	CTAG	7 cut(s)	54, 107, 980, 1320, 1701, 1713, 1805
ZraI	GACGTC	2 cut(s)	31, 355
ZrmI	AGTACT	2 cut(s)	1324, 1711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.