Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0013706

Physical Location & Seq

Genomic Coordinates Forward (+)

509102 .. 511867

Gene Structure 2766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG003400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1983 bp

ATGGAACGATATCAAGACGGAGACGGAGACGTCAGGATGAAAGGTGGCGGCACTAGTGATAGTGGTAGTGGAGAAGAAGAAGAGGTTGAGTCGTGGGGGACGTGGGAGGAGCTCGTGCTAGCATGCGCGGTGAAGCGTCACGGCGTCAAGGACTGGGAGTCGGTGGCCATGGAAGTCCAAGGCAAGACCTCTCTCCCGCAACTCCACACCACCGCCTACAACTGCAGGCGAAAGTATCAGGATCTCCAACGCCGATTCCATCATGACCAGCAAGCCGACCAGGATCCTATCCCTTGGCTCCACCACCTCAAAGACCTACGCCTCGCTCAGCTTCGTCAGGACCTCCATCGCTACGACGTCTCTATCCTGTCGTTGCAGTTGAAGGTGAAGAAGTTAGAGGAAGAGAAAGACGACGACCCCAAACCAGATCTGGAGGAACGCGACTCCAAGGGACGCACCCGCACCGGATCAGAAGAAGAAGAAGACGACAAAAAGAGACCGGACGAACCGGACCGGTTCAAACACGAGAACCAGTCGGTGAACGGCTCCAATTCCACCTGCTCCAAAACCCACGAGCACGAGGAGGGCCACAATCATAAAAAGTCTCAGACTGAACCGGACCCGCTCCCGGCCGGTTCGGCTCAACCCTCCAAAGGCCGCTCGGACTCCGACGACGACTCGGATAAAGGTAGCTGTGAAACCGTCGCCAAGAAGCGCCGGCGGCAAGAGAGGGGCGCGGCGGCGTCCCGTGAGTCGGGGAGTAGTGAGGCGCAGAGTTCGGCGAGCTTGACGCGGAAACGACGTCGTAAATTGGAATTGGAAGACCAGCCTGACGAACGAGTGTTGGGGAAATCACAGCCGTTGGCTGCCATTCTGCAGATGATCCGAGCGCATCAGCATGGCTCATTGTTCCAGCGACGGCTTCCAAGCCAGGAAAGTGACAAGTATACGAATATGGTCCGGCAGCATGTGGACCTAGAGACGATACAAACAAAGCTCCAAAAGGACTCCTATTCCACGCTCACATTCTACCGGGATCTCCTTCTCCTCTTGTCCAACGCCGTCGTTTTCTTCCCCAAATCGTCAACTGAATCCGTCGCTGCCCACCAACTCCGACGCCTTGTCTTGAACGAAATGAAGAAGAGAAATCTAATCACCAGGCCCGACCCTTCATCTGGGCCGTCAGACTCGTTACCCTCCCAAACAACGATTCCAACAGACTCGTTGCTTGCCAAACACAAGTCAACAGCACCCATTATTGTCTGCCGCAAACGAAGCTCAATCTCATCAAAGCCTTCTACCATTGCTCGTAAGGCTAGTACTACCACTGATCACCCAGCAGCAGAAGCGCCAGCAGCTTTTGATATTAAACCACCCAATAACAGTACGAAGACCTCTAACTTAAACAATGTAGATGAAGATAATGGATCGAAAGAGAAACCTGTAACTGGAACCAGAAGCTCAAGAAGGACGACAACTACTCATCATCACGACAATAATGCTGGCGCTTCCTCCACCAAGAAAAAAATTTCAAGCCCTGCGGAAACTCCCAAAGCAGGTAAGAAGAGGAAAACCCCAGAGCCAGCGACAGCATCGGACAAAAAGAGAAGTGGAGCAGCGGCAGCGGCAGCCAATTTCCTGAAAAGAATAAAGCGTAATTCTCCTGCGCAGCAGAAATTGAAATTGAACGGTGGGACTGGCTCTAGTACAAGTACTAGAGGTGCAGAGCAGAAGAAGAGGGGAGCTAATAAGACTGACAAGGTTAAAGGAAGGGTGTCAAGGCAAAGTGGCGGTGAAAATAAGAAACAAGTGAAAGAAGAAAGCAGTCCATCCAAGCGAAGTATAGGAAGACCGTCCAAGAGGGCAGCTGAGACAGCAGCGGCTGCCAATGTAGTTTCACCGAAGCGATCAAGGGAAAATGGGGGGAAGCAGCAGCAGCAGCAAGAAGCTTCTAAGCGGCCCAAAAAACGATCCCGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

660

Amino Acids

73.36

Weight (kDa)

9.81

Isoelectric Point (pI)

67.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	31 - 80	1e-05	Myb-like DNA-binding domain
Bromodomain	PF00439	290 - 369	9.6e-10	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00180 FvH4_7g00180
malus_domestica	MD02G1318400.v1.1 MD07G1002900.v1.1 MD07G1247400.v1.1
prunus_persica	Prupe.2G004300_v2.0.a1
pyrus_communis	pycom02g26660 pycom07g00290
rosa_chinensis	RchiOBHm_Chr1g0313431
rosa_laevigata	RLG00000030797
rosa_roxburghii	Rroxscaffold_4G00332190
rosa_rugosa	RorugPtG0005000.1
rosa_samantha	Rh1AG003600 Rh1BG000500 Rh1CG001100 Rh1CG007900 Rh1DG003400
rosa_wichuraiana	Rw1G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
AasI	GACNNNNNNGTC	1 cut(s)	29
AatII	GACGTC	3 cut(s)	33, 360, 805
Acc16I	TGCGCA	1 cut(s)	1668
Acc36I	ACCTGC	2 cut(s)	566, 1547
AccBSI	CCGCTC	2 cut(s)	625, 660
AccI	GTMKAC	1 cut(s)	947
AccII	CGCG	4 cut(s)	128, 441, 737, 793
AclWI	GGATC	8 cut(s)	249, 278, 291, 475, 877, 1044, 1435, 1965
AcoI	YGGCCR	2 cut(s)	165, 630
AcsI	RAATTY	1 cut(s)	1527
AcyI	GRCGYC	6 cut(s)	30, 144, 357, 743, 802, 1117
AfaI	GTAC	4 cut(s)	1321, 1387, 1708, 1714
AfiI	CCNNNNNNNGG	6 cut(s)	628, 653, 754, 1175, 1448, 1556
AgeI	ACCGGT	1 cut(s)	513
AgsI	TTSAA	6 cut(s)	382, 520, 1129, 1533, 1681, 1687
AhdI	GACNNNNNGTC	2 cut(s)	157, 1121
AhlI	ACTAGT	1 cut(s)	53
AjiI	CACGTC	1 cut(s)	102
AjnI	CCWGG	3 cut(s)	279, 930, 1157
AjuI	GAANNNNNNNTTGG	2 cut(s)	1194, 1226
Alw21I	GWGCWC	2 cut(s)	114, 579
Alw26I	GTCTC	7 cut(s)	15, 21, 364, 490, 609, 974, 1865
AlwI	GGATC	8 cut(s)	249, 278, 291, 475, 877, 1044, 1435, 1965
AlwNI	CAGNNNCTG	1 cut(s)	1883
AoxI	GGCC	7 cut(s)	165, 586, 630, 655, 1160, 1178, 1958
ApoI	RAATTY	1 cut(s)	1527
AsiGI	ACCGGT	1 cut(s)	513
AspLEI	GCGC	8 cut(s)	128, 717, 737, 772, 892, 1351, 1508, 1669
AspS9I	GGNCC	9 cut(s)	340, 511, 586, 619, 958, 973, 1161, 1178, 1959
AsuC2I	CCSGG	2 cut(s)	629, 1034
AsuHPI	GGTGA	7 cut(s)	142, 397, 550, 1147, 1325, 1805, 1890
AsuNHI	GCTAGC	1 cut(s)	118
AvaII	GGWCC	5 cut(s)	340, 511, 619, 958, 973
BalI	TGGCCA	1 cut(s)	167
BamHI	GGATCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	114
BauI	CACGAG	4 cut(s)	113, 524, 572, 578
BbsI	GAAGAC	4 cut(s)	489, 828, 1397, 1855
Bbv12I	GWGCWC	2 cut(s)	114, 579
BccI	CCATC	3 cut(s)	267, 354, 1837
BceAI	ACGGC	6 cut(s)	157, 559, 844, 935, 1046, 1165
BcgI	CGANNNNNNTGC	2 cut(s)	1481, 1515
BciT130I	CCWGG	3 cut(s)	281, 932, 1159
BclI	TGATCA	1 cut(s)	1330
BcnI	CCSGG	2 cut(s)	629, 1034
BcoDI	GTCTC	7 cut(s)	15, 21, 364, 490, 609, 974, 1865
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	6 cut(s)	54, 119, 977, 1317, 1704, 1716
BfmI	CTRYAG	2 cut(s)	223, 875
BfoI	RGCGCY	3 cut(s)	718, 1352, 1509
BfuAI	ACCTGC	2 cut(s)	566, 1547
BglI	GCCNNNNNGGC	1 cut(s)	638
BglII	AGATCT	1 cut(s)	427
BlpI	GCTNAGC	1 cut(s)	327
BmcAI	AGTACT	2 cut(s)	1321, 1714
Bme1390I	CCNGG	5 cut(s)	281, 629, 932, 1034, 1159
Bme18I	GGWCC	5 cut(s)	340, 511, 619, 958, 973
BmeRI	GACNNNNNGTC	2 cut(s)	157, 1121
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	9 cut(s)	340, 511, 586, 619, 958, 973, 1161, 1178, 1959
BmiI	GGNNCC	5 cut(s)	285, 299, 547, 621, 1453
BmrFI	CCNGG	5 cut(s)	281, 629, 932, 1034, 1159
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	2 cut(s)	901, 1601
BmtI	GCTAGC	1 cut(s)	122
BmuI	ACTGGG	1 cut(s)	163
BpiI	GAAGAC	4 cut(s)	489, 828, 1397, 1855
BpmI	CTGGAG	1 cut(s)	452
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	1447
BpuMI	CCSGG	2 cut(s)	629, 1034
BsaHI	GRCGYC	6 cut(s)	30, 144, 357, 743, 802, 1117
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	4 cut(s)	168, 178, 293, 447
BsaWI	WCCGGW	5 cut(s)	464, 499, 508, 513, 616
Bsc4I	CCNNNNNNNGG	6 cut(s)	628, 653, 754, 1175, 1448, 1556
Bse118I	RCCGGY	3 cut(s)	513, 632, 717
Bse1I	ACTGG	4 cut(s)	158, 532, 1453, 1702
Bse3DI	GCAATG	1 cut(s)	1302
BseBI	CCWGG	3 cut(s)	281, 932, 1159
BseDI	CCNNGG	4 cut(s)	168, 178, 293, 447
BseGI	GGATG	2 cut(s)	42, 1829
BseLI	CCNNNNNNNGG	6 cut(s)	628, 653, 754, 1175, 1448, 1556
BseMI	GCAATG	1 cut(s)	1302
BseMII	CTCAG	3 cut(s)	341, 620, 1860
BseNI	ACTGG	4 cut(s)	158, 532, 1453, 1702
BseRI	GAGGAG	3 cut(s)	122, 596, 1037
BseX3I	CGGCCG	1 cut(s)	630
BseYI	CCCAGC	1 cut(s)	1336
BsgI	GTGCAG	1 cut(s)	1743
Bsh1236I	CGCG	4 cut(s)	128, 441, 737, 793
Bsh1285I	CGRYCG	1 cut(s)	633
BshFI	GGCC	7 cut(s)	167, 588, 632, 657, 1162, 1180, 1960
BshTI	ACCGGT	1 cut(s)	513
BsiEI	CGRYCG	1 cut(s)	633
BsiHKAI	GWGCWC	2 cut(s)	114, 579
BslFI	GGGAC	4 cut(s)	112, 465, 730, 1708
BslI	CCNNNNNNNGG	6 cut(s)	628, 653, 754, 1175, 1448, 1556
BsmAI	GTCTC	7 cut(s)	15, 21, 364, 490, 609, 974, 1865
BsmBI	CGTCTC	4 cut(s)	15, 21, 364, 974
BsmFI	GGGAC	4 cut(s)	112, 465, 730, 1708
BsnI	GGCC	7 cut(s)	167, 588, 632, 657, 1162, 1180, 1960
Bso31I	GGTCTC	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	114, 579
Bsp1720I	GCTNAGC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	168
BspANI	GGCC	7 cut(s)	167, 588, 632, 657, 1162, 1180, 1960
BspCNI	CTCAG	3 cut(s)	340, 619, 1861
BspFNI	CGCG	4 cut(s)	128, 441, 737, 793
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	5 cut(s)	285, 299, 547, 621, 1453
BspMAI	CTGCAG	2 cut(s)	227, 879
BspMI	ACCTGC	2 cut(s)	566, 1547
BspOI	GCTAGC	1 cut(s)	122
BspPI	GGATC	8 cut(s)	249, 278, 291, 475, 877, 1044, 1435, 1965
BspTNI	GGTCTC	1 cut(s)	490
BsrBI	CCGCTC	2 cut(s)	625, 660
BsrDI	GCAATG	1 cut(s)	1302
BsrFI	RCCGGY	3 cut(s)	513, 632, 717
BsrI	ACTGG	4 cut(s)	158, 532, 1453, 1702
BssAI	RCCGGY	3 cut(s)	513, 632, 717
BssECI	CCNNGG	4 cut(s)	168, 178, 293, 447
BssNAI	GTATAC	1 cut(s)	948
BssNI	GRCGYC	6 cut(s)	30, 144, 357, 743, 802, 1117
BssSI	CACGAG	4 cut(s)	113, 524, 572, 578
BssT1I	CCWWGG	4 cut(s)	168, 178, 293, 447
Bst1107I	GTATAC	1 cut(s)	948
Bst2BI	CACGAG	4 cut(s)	113, 524, 572, 578
Bst2UI	CCWGG	3 cut(s)	281, 932, 1159
Bst4CI	ACNGT	4 cut(s)	703, 1385, 1691, 1854
Bst6I	CTCTTC	5 cut(s)	75, 396, 1136, 1559, 1730
BstACI	GRCGYC	6 cut(s)	30, 144, 357, 743, 802, 1117
BstAPI	GCANNNNNTGC	1 cut(s)	1883
BstDEI	CTNAG	4 cut(s)	327, 606, 1869, 1953
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	42, 1829
BstFNI	CGCG	4 cut(s)	128, 441, 737, 793
BstH2I	RGCGCY	3 cut(s)	718, 1352, 1509
BstHHI	GCGC	8 cut(s)	128, 717, 737, 772, 892, 1351, 1508, 1669
BstMAI	GTCTC	7 cut(s)	15, 21, 364, 490, 609, 974, 1865
BstMCI	CGRYCG	1 cut(s)	633
BstNI	CCWGG	3 cut(s)	281, 932, 1159
BstNSI	RCATGY	2 cut(s)	126, 971
BstSCI	CCNGG	5 cut(s)	279, 627, 930, 1032, 1157
BstSFI	CTRYAG	2 cut(s)	223, 875
BstUI	CGCG	4 cut(s)	128, 441, 737, 793
BstV2I	GAAGAC	4 cut(s)	489, 828, 1397, 1855
BstX2I	RGATCY	4 cut(s)	241, 283, 427, 1036
BstYI	RGATCY	4 cut(s)	241, 283, 427, 1036
BstZ17I	GTATAC	1 cut(s)	948
BstZI	CGGCCG	1 cut(s)	630
BsuRI	GGCC	7 cut(s)	167, 588, 632, 657, 1162, 1180, 1960
BtgI	CCRYGG	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	332
BtrI	CACGTC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	42, 1829
BtsIMutI	CAGTG	1 cut(s)	1326
BveI	ACCTGC	2 cut(s)	566, 1547
CaiI	CAGNNNCTG	1 cut(s)	1883
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	8 cut(s)	128, 717, 737, 772, 892, 1351, 1508, 1669
Cfr10I	RCCGGY	3 cut(s)	513, 632, 717
Cfr13I	GGNCC	9 cut(s)	340, 511, 586, 619, 958, 973, 1161, 1178, 1959
CpoI	CGGWCCG	1 cut(s)	511
CseI	GACGC	6 cut(s)	125, 133, 462, 732, 799, 1125
Csp6I	GTAC	4 cut(s)	1320, 1386, 1707, 1713
CspAI	ACCGGT	1 cut(s)	513
CspI	CGGWCCG	1 cut(s)	511
CviAII	CATG	5 cut(s)	123, 169, 263, 899, 968
CviQI	GTAC	4 cut(s)	1320, 1386, 1707, 1713
DdeI	CTNAG	4 cut(s)	327, 606, 1869, 1953
DrdI	GACNNNNNNGTC	1 cut(s)	29
DriI	GACNNNNNGTC	2 cut(s)	157, 1121
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	2 cut(s)	165, 630
EagI	CGGCCG	1 cut(s)	630
Eam1104I	CTCTTC	5 cut(s)	75, 396, 1136, 1559, 1730
Eam1105I	GACNNNNNGTC	2 cut(s)	157, 1121
EarI	CTCTTC	5 cut(s)	75, 396, 1136, 1559, 1730
Ecl136II	GAGCTC	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	630
Eco130I	CCWWGG	4 cut(s)	168, 178, 293, 447
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	490
Eco32I	GATATC	1 cut(s)	11
Eco47I	GGWCC	5 cut(s)	340, 511, 619, 958, 973
Eco52I	CGGCCG	1 cut(s)	630
Eco53kI	GAGCTC	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	3 cut(s)	279, 930, 1157
EcoRV	GATATC	1 cut(s)	11
EcoT14I	CCWWGG	4 cut(s)	168, 178, 293, 447
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	4 cut(s)	168, 178, 293, 447
Esp3I	CGTCTC	4 cut(s)	15, 21, 364, 974
FaeI	CATG	5 cut(s)	126, 172, 266, 902, 971
FaiI	YATR	9 cut(s)	124, 170, 264, 597, 900, 948, 956, 969, 1844
FaqI	GGGAC	4 cut(s)	112, 465, 730, 1708
FatI	CATG	5 cut(s)	122, 168, 262, 898, 967
FauI	CCCGC	3 cut(s)	204, 467, 630
FbaI	TGATCA	1 cut(s)	1330
FblI	GTMKAC	1 cut(s)	947
FokI	GGATG	2 cut(s)	49, 1816
FriOI	GRGCYC	1 cut(s)	114
FspBI	CTAG	6 cut(s)	54, 119, 977, 1317, 1704, 1716
FspI	TGCGCA	1 cut(s)	1668
GlaI	GCGC	8 cut(s)	127, 716, 736, 771, 891, 1350, 1507, 1668
GsaI	CCCAGC	1 cut(s)	1340
GsuI	CTGGAG	1 cut(s)	452
HaeII	RGCGCY	3 cut(s)	718, 1352, 1509
HaeIII	GGCC	7 cut(s)	167, 588, 632, 657, 1162, 1180, 1960
HgaI	GACGC	6 cut(s)	125, 133, 462, 732, 799, 1125
HhaI	GCGC	8 cut(s)	128, 717, 737, 772, 892, 1351, 1508, 1669
Hin1I	GRCGYC	6 cut(s)	30, 144, 357, 743, 802, 1117
Hin1II	CATG	5 cut(s)	126, 172, 266, 902, 971
Hin6I	GCGC	8 cut(s)	126, 715, 735, 770, 890, 1349, 1506, 1667
HinP1I	GCGC	8 cut(s)	126, 715, 735, 770, 890, 1349, 1506, 1667
HincII	GTYRAC	2 cut(s)	1086, 1245
HindII	GTYRAC	2 cut(s)	1086, 1245
HindIII	AAGCTT	1 cut(s)	1947
HphI	GGTGA	7 cut(s)	142, 397, 550, 1147, 1325, 1805, 1890
Hpy166II	GTNNAC	5 cut(s)	541, 948, 973, 1086, 1245
Hpy188I	TCNGA	9 cut(s)	472, 609, 664, 670, 682, 887, 1115, 1186, 1597
Hpy8I	GTNNAC	5 cut(s)	541, 948, 973, 1086, 1245
HpyAV	CCTTC	7 cut(s)	376, 1052, 1179, 1305, 1461, 1764, 1971
HpyCH4III	ACNGT	4 cut(s)	703, 1385, 1691, 1854
HpyCH4IV	ACGT	4 cut(s)	30, 101, 357, 802
HpyCH4V	TGCA	4 cut(s)	225, 376, 877, 1724
HpyF3I	CTNAG	4 cut(s)	327, 606, 1869, 1953
HpySE526I	ACGT	4 cut(s)	30, 101, 357, 802
Hsp92I	GRCGYC	6 cut(s)	30, 144, 357, 743, 802, 1117
Hsp92II	CATG	5 cut(s)	126, 172, 266, 902, 971
HspAI	GCGC	8 cut(s)	126, 715, 735, 770, 890, 1349, 1506, 1667
KroI	GCCGGC	1 cut(s)	717
KroNI	GCCGGC	1 cut(s)	719
Ksp22I	TGATCA	1 cut(s)	1330
LmnI	GCTCC	8 cut(s)	109, 303, 551, 566, 630, 1002, 1613, 1742
LweI	GCATC	2 cut(s)	901, 1601
MaeI	CTAG	6 cut(s)	54, 119, 977, 1317, 1704, 1716
MaeII	ACGT	4 cut(s)	30, 101, 357, 802
MaeIII	GTNAC	4 cut(s)	137, 938, 1191, 1444
MbiI	CCGCTC	2 cut(s)	625, 660
MflI	RGATCY	4 cut(s)	241, 283, 427, 1036
MhlI	GDGCHC	2 cut(s)	114, 579
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	8 cut(s)	550, 809, 815, 1527, 1633, 1657, 1676, 1682
MluNI	TGGCCA	1 cut(s)	167
MlyI	GAGTC	9 cut(s)	98, 167, 437, 659, 671, 761, 1001, 1181, 1214
MmeI	TCCRAC	5 cut(s)	271, 693, 1080, 1138, 1238
Mox20I	TGGCCA	1 cut(s)	167
MreI	CGCCGGCG	1 cut(s)	717
MroNI	GCCGGC	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	3 cut(s)	1368, 1403, 1764
MslI	CAYNNNNRTG	1 cut(s)	897
Msp20I	TGGCCA	1 cut(s)	167
MspA1I	CMGCKG	4 cut(s)	1619, 1625, 1868, 1880
MspR9I	CCNGG	5 cut(s)	281, 629, 932, 1034, 1159
MvaI	CCWGG	3 cut(s)	281, 932, 1159
MvnI	CGCG	4 cut(s)	128, 441, 737, 793
NaeI	GCCGGC	1 cut(s)	719
NciI	CCSGG	2 cut(s)	629, 1034
NcoI	CCATGG	1 cut(s)	168
NgoMIV	GCCGGC	1 cut(s)	717
NheI	GCTAGC	1 cut(s)	118
NlaIII	CATG	5 cut(s)	126, 172, 266, 902, 971
NlaIV	GGNNCC	5 cut(s)	285, 299, 547, 621, 1453
NmuCI	GTSAC	2 cut(s)	137, 938
NsbI	TGCGCA	1 cut(s)	1668
NspI	RCATGY	2 cut(s)	126, 971
PaeI	GCATGC	1 cut(s)	126
PagI	TCATGA	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PdiI	GCCGGC	1 cut(s)	719
PfeI	GAWTC	3 cut(s)	255, 1091, 1210
PinAI	ACCGGT	1 cut(s)	513
PleI	GAGTC	9 cut(s)	97, 166, 437, 659, 671, 760, 1001, 1181, 1214
PpsI	GAGTC	9 cut(s)	97, 166, 437, 659, 671, 760, 1001, 1181, 1214
PpuMI	RGGWCCY	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	3 cut(s)	279, 930, 1157
PspFI	CCCAGC	1 cut(s)	1336
PspGI	CCWGG	3 cut(s)	279, 930, 1157
PspN4I	GGNNCC	5 cut(s)	285, 299, 547, 621, 1453
PspPI	GGNCC	9 cut(s)	340, 511, 586, 619, 958, 973, 1161, 1178, 1959
PspPPI	RGGWCCY	1 cut(s)	340
PstI	CTGCAG	2 cut(s)	227, 879
PstNI	CAGNNNCTG	1 cut(s)	1883
PsuI	RGATCY	4 cut(s)	241, 283, 427, 1036
PvuII	CAGCTG	1 cut(s)	1868
RsaI	GTAC	4 cut(s)	1321, 1387, 1708, 1714
RsaNI	GTAC	4 cut(s)	1320, 1386, 1707, 1713
RseI	CAYNNNNRTG	1 cut(s)	897
Rsr2I	CGGWCCG	1 cut(s)	511
RsrII	CGGWCCG	1 cut(s)	511
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	1368, 1403, 1764
Sau96I	GGNCC	9 cut(s)	340, 511, 586, 619, 958, 973, 1161, 1178, 1959
ScaI	AGTACT	2 cut(s)	1321, 1714
SchI	GAGTC	9 cut(s)	98, 167, 437, 659, 671, 761, 1001, 1181, 1214
ScrFI	CCNGG	5 cut(s)	281, 629, 932, 1034, 1159
SduI	GDGCHC	2 cut(s)	114, 579
SfaNI	GCATC	2 cut(s)	901, 1601
SfcI	CTRYAG	2 cut(s)	223, 875
SgrAI	CRCCGGYG	1 cut(s)	717
SinI	GGWCC	5 cut(s)	340, 511, 619, 958, 973
SmiMI	CAYNNNNRTG	1 cut(s)	897
SmlI	CTYRAG	1 cut(s)	1462
SmoI	CTYRAG	1 cut(s)	1462
SpeI	ACTAGT	1 cut(s)	53
SphI	GCATGC	1 cut(s)	126
Sse9I	AATT	8 cut(s)	550, 809, 815, 1527, 1633, 1657, 1676, 1682
SspMI	CTAG	6 cut(s)	54, 119, 977, 1317, 1704, 1716
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	5 cut(s)	279, 627, 930, 1032, 1157
StyI	CCWWGG	4 cut(s)	168, 178, 293, 447
TaaI	ACNGT	4 cut(s)	703, 1385, 1691, 1854
TaiI	ACGT	4 cut(s)	33, 104, 360, 805
TaqI	TCGA	1 cut(s)	1430
TasI	AATT	8 cut(s)	550, 809, 815, 1527, 1633, 1657, 1676, 1682
TatI	WGTACW	3 cut(s)	1319, 1706, 1712
TfiI	GAWTC	3 cut(s)	255, 1091, 1210
Tru1I	TTAA	3 cut(s)	1368, 1403, 1764
Tru9I	TTAA	3 cut(s)	1368, 1403, 1764
TscAI	CASTG	1 cut(s)	1333
TseFI	GTSAC	2 cut(s)	137, 938
Tsp45I	GTSAC	2 cut(s)	137, 938
TspDTI	ATGAA	4 cut(s)	53, 1151, 1161, 1431
TspGWI	ACGGA	3 cut(s)	33, 39, 1084
TspRI	CASTG	1 cut(s)	1333
VpaK11BI	GGWCC	5 cut(s)	340, 511, 619, 958, 973
XapI	RAATTY	1 cut(s)	1527
XceI	RCATGY	2 cut(s)	126, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	947
XspI	CTAG	6 cut(s)	54, 119, 977, 1317, 1704, 1716
ZraI	GACGTC	3 cut(s)	31, 358, 803
ZrmI	AGTACT	2 cut(s)	1321, 1714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.