Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0013706

Physical Location & Seq

Genomic Coordinates Reverse (-)

111636 .. 115231

Gene Structure 3596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG001100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1980 bp

ATGGAACGATATCAAGACGGAGACGGAGACGTAAGGATGAAAGGTGGCGGCACTAGTGGCAGTGGTAGTGGAGAAGAGGTTGAGTCGTGGGGGACGTGGGAGGAGCTTTTGCTAGCATGCGCGGTGAAGCGTCACGGCGTCAAGGACTGGGAGTCGGTGGCCATGGAAGTCCAAGGCAAGACCTCTCTCCCGCAACTCCACACCACCGCTTACAACTGCAAGCGAAAGTATCAGGATCTCCAACGCCGATTCCACCAAAGCCATGAAGACCAGGATCCTATCCCTTGGCTCCACCACCTCAAAGACCTACGCCTCGCTCAGCTTCGTCAGGACCTCCATCGCTACGACGTCTCTATCCTGTCGTTGCAGTTGAAGGTGAAGAAGTTAGAGGAAGAAGAGAAAGACGACGACCCCAAACCAGATCTGGAGGAACGCGACTCCAAGGGACGCACCCGCACCAGATCAGAAGAAGAAGAAGAAGACGACAAAAAAACACCGGACGAACCGGACCGGTTCAAACACGAGAACCAGTCGGTGAACGGCTCCAATTCCACCTGCTCCAAAACCCACGAGCACGAGGAGGACCACAATCATAAAAAGTCTCCGACTGAACCGGACCCGCTCCCGACCGGTTCGGCTCAACCCTCCAAAGGCCGCTCGGACTCCGACGACTCGGATAAAGGAAGCTGTGAAACCGTCGCCAAGAAGCGCCGGCGGCAAGAGAGAGGCGGGGCTGCGTCGCGTGAGTCGGGGAGTAGTGAGGCGCAGAGTTCGGCCAGCTTGACGCGGAAACGACGTCGTAAATTGGAATTGGAAGACCAGCCTGACGAACGAGTATTGGGGAAATCACAGCCGTTGGCTGCCATTCTGCAGATGATCCGAGCGCATCAGCATGGCTCATTGTTCCAGCGACGGCTTCCAAGCCAGGAAAGTGACAAGTATACGAGTATGGTCCGGCAGCATGTGGACCTAGAGACGATACAAACAAAGCTCCAAAAGGACTCCTCTTCCACGCTCACATTCTACCGAGATCTCCTACTCCTCTTCTCCAACGCCGTCGTTTTCTTCCCCAAATCCTCGACTGAATCCGTCGCTGCCGACCAACTCCGACGCCTTGTCTTGAACGAAATGAAGAAGAGAAATCTAATCACCAGGCCCAACCCTTCATCTGGGCCGTCAGACTCATTGCCCTCCCAAACAACGATTCCAACAGACTCGTTGCTTGCCAAACACAAGTCAACAGCACCCATTATTGTCTGCCGCAAACGAAGCTCAATCTCATCAAAGCCTTCTACCGTTGCTCGTAAGGCTAGTACTACCACTGATCACCCAGCAGCAGAAGCGCCAGCAGCTTTTGATATTAAACCACCCAATAACAGTAAGAAGACCTCTAGCTTAAACAATGTAGATGAAGATAATGGATCAAAAGAGAAACCTGTAACTGGAACCAGAAGCTCAAGAAGGATGACAACTACTCATCATCACGACAATAATGCTGGCGCTTCCTCCACCAAGAAAAAAATTTCAAGCCCTGCGGAAACTCCCAAAGCAGGTAAGAAGAGGAAAACCCCAGAGCCAGCGACAGCATCGGACAAAAAGAGAAGTGGAGCAGCGGCAGCGGCAGCCGATTTCCTGAAAAGAATAAAGCGTAATTCTCCTGCGCAGCAGAAACTGAAATTGAAAGGTGGGACTGGCTCTAGTACAAGTGCTAGAGGTGCAGAGCAGAAGAAGAGGGGAGGTAATATGGCTGACAAGGTTAAAGGAAGGGTGTCAAGGCAAAGTGGTGGTGAAAATAAGAAACAAGTGAAAGAAGAAAGCAGTCCATCCAAGCGGAGTATAGGAAGACCGTCCAAGAGGGCAGCTGAGACAGCAGCGGCTGCCAATGTAGTTTCACCGAAGCGATCAAGGGAAAATGGGGGGAAGCAGCAGCAGCAGCAGCAAGAAGCTTCTAAGCGGCCCAAAAAACGATCCCGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

659

Amino Acids

73.16

Weight (kDa)

9.82

Isoelectric Point (pI)

69.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	29 - 78	1.3e-06	Myb-like DNA-binding domain
Bromodomain	PF00439	288 - 367	2.5e-08	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00180 FvH4_7g00180
malus_domestica	MD02G1318400.v1.1 MD07G1002900.v1.1 MD07G1247400.v1.1
prunus_persica	Prupe.2G004300_v2.0.a1
pyrus_communis	pycom02g26660 pycom07g00290
rosa_chinensis	RchiOBHm_Chr1g0313431
rosa_laevigata	RLG00000030797
rosa_roxburghii	Rroxscaffold_4G00332190
rosa_rugosa	RorugPtG0005000.1
rosa_samantha	Rh1AG003600 Rh1BG000500 Rh1CG001100 Rh1CG007900 Rh1DG003400
rosa_wichuraiana	Rw1G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	563
AatII	GACGTC	2 cut(s)	351, 799
Acc16I	TGCGCA	1 cut(s)	1662
Acc36I	ACCTGC	2 cut(s)	563, 1541
AccBSI	CCGCTC	2 cut(s)	622, 657
AccI	GTMKAC	1 cut(s)	941
AccII	CGCG	4 cut(s)	122, 435, 742, 787
AclWI	GGATC	6 cut(s)	243, 269, 282, 871, 1429, 1962
AcoI	YGGCCR	2 cut(s)	159, 774
AcsI	RAATTY	1 cut(s)	1521
AcyI	GRCGYC	4 cut(s)	138, 348, 796, 1111
AfaI	GTAC	2 cut(s)	1315, 1702
AfiI	CCNNNNNNNGG	4 cut(s)	650, 1169, 1442, 1550
AgeI	ACCGGT	2 cut(s)	510, 629
AgsI	TTSAA	5 cut(s)	373, 517, 1123, 1527, 1681
AhdI	GACNNNNNGTC	2 cut(s)	151, 1115
AhlI	ACTAGT	1 cut(s)	53
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	3 cut(s)	270, 924, 1151
AjuI	GAANNNNNNNTTGG	2 cut(s)	1188, 1220
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	6 cut(s)	15, 21, 355, 606, 968, 1859
AlwI	GGATC	6 cut(s)	243, 269, 282, 871, 1429, 1962
AlwNI	CAGNNNCTG	2 cut(s)	1672, 1877
AoxI	GGCC	6 cut(s)	159, 652, 774, 1154, 1172, 1955
ApoI	RAATTY	1 cut(s)	1521
AsiGI	ACCGGT	2 cut(s)	510, 629
AspLEI	GCGC	7 cut(s)	122, 711, 766, 886, 1345, 1502, 1663
AspS9I	GGNCC	9 cut(s)	331, 508, 583, 616, 952, 967, 1155, 1172, 1956
AsuHPI	GGTGA	7 cut(s)	136, 388, 547, 1141, 1319, 1799, 1884
AsuNHI	GCTAGC	1 cut(s)	112
AvaII	GGWCC	6 cut(s)	331, 508, 583, 616, 952, 967
BalI	TGGCCA	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	274
BauI	CACGAG	3 cut(s)	521, 569, 575
BbsI	GAAGAC	5 cut(s)	273, 486, 822, 1391, 1849
Bbv12I	GWGCWC	1 cut(s)	576
BccI	CCATC	2 cut(s)	345, 1831
BceAI	ACGGC	6 cut(s)	151, 556, 838, 929, 1040, 1159
BcgI	CGANNNNNNTGC	2 cut(s)	1475, 1509
BciT130I	CCWGG	3 cut(s)	272, 926, 1153
BclI	TGATCA	1 cut(s)	1324
BcoDI	GTCTC	6 cut(s)	15, 21, 355, 606, 968, 1859
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	7 cut(s)	54, 113, 971, 1311, 1392, 1698, 1710
BfmI	CTRYAG	1 cut(s)	869
BfoI	RGCGCY	3 cut(s)	712, 1346, 1503
BfuAI	ACCTGC	2 cut(s)	563, 1541
BglII	AGATCT	2 cut(s)	421, 1030
BlpI	GCTNAGC	1 cut(s)	318
BmcAI	AGTACT	1 cut(s)	1315
Bme1390I	CCNGG	3 cut(s)	272, 926, 1153
Bme18I	GGWCC	6 cut(s)	331, 508, 583, 616, 952, 967
BmeRI	GACNNNNNGTC	2 cut(s)	151, 1115
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	9 cut(s)	331, 508, 583, 616, 952, 967, 1155, 1172, 1956
BmiI	GGNNCC	5 cut(s)	276, 290, 544, 618, 1447
BmrFI	CCNGG	3 cut(s)	272, 926, 1153
BmrI	ACTGGG	1 cut(s)	157
BmsI	GCATC	2 cut(s)	895, 1595
BmtI	GCTAGC	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	157
BpiI	GAAGAC	5 cut(s)	273, 486, 822, 1391, 1849
BpmI	CTGGAG	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	1441
BsaHI	GRCGYC	4 cut(s)	138, 348, 796, 1111
BsaJI	CCNNGG	4 cut(s)	162, 172, 284, 441
BsaWI	WCCGGW	5 cut(s)	496, 505, 510, 613, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	4 cut(s)	650, 1169, 1442, 1550
Bse118I	RCCGGY	3 cut(s)	510, 629, 711
Bse1I	ACTGG	4 cut(s)	152, 529, 1447, 1696
Bse3DI	GCAATG	1 cut(s)	1184
BseBI	CCWGG	3 cut(s)	272, 926, 1153
BseDI	CCNNGG	4 cut(s)	162, 172, 284, 441
BseGI	GGATG	3 cut(s)	42, 1470, 1823
BseLI	CCNNNNNNNGG	4 cut(s)	650, 1169, 1442, 1550
BseMI	GCAATG	1 cut(s)	1184
BseMII	CTCAG	2 cut(s)	332, 1854
BseNI	ACTGG	4 cut(s)	152, 529, 1447, 1696
BseRI	GAGGAG	4 cut(s)	116, 593, 994, 1031
BseYI	CCCAGC	1 cut(s)	1330
BsgI	GTGCAG	1 cut(s)	1737
Bsh1236I	CGCG	4 cut(s)	122, 435, 742, 787
Bsh1285I	CGRYCG	1 cut(s)	630
BshFI	GGCC	6 cut(s)	161, 654, 776, 1156, 1174, 1957
BshTI	ACCGGT	2 cut(s)	510, 629
BsiEI	CGRYCG	1 cut(s)	630
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	7 cut(s)	497, 506, 511, 614, 630, 712, 955
BslFI	GGGAC	3 cut(s)	106, 459, 1702
BslI	CCNNNNNNNGG	4 cut(s)	650, 1169, 1442, 1550
BsmAI	GTCTC	6 cut(s)	15, 21, 355, 606, 968, 1859
BsmBI	CGTCTC	4 cut(s)	15, 21, 355, 968
BsmFI	GGGAC	3 cut(s)	106, 459, 1702
BsnI	GGCC	6 cut(s)	161, 654, 776, 1156, 1174, 1957
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp1720I	GCTNAGC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	162
BspANI	GGCC	6 cut(s)	161, 654, 776, 1156, 1174, 1957
BspCNI	CTCAG	2 cut(s)	331, 1855
BspFNI	CGCG	4 cut(s)	122, 435, 742, 787
BspLI	GGNNCC	5 cut(s)	276, 290, 544, 618, 1447
BspMAI	CTGCAG	1 cut(s)	873
BspMI	ACCTGC	2 cut(s)	563, 1541
BspOI	GCTAGC	1 cut(s)	116
BspPI	GGATC	6 cut(s)	243, 269, 282, 871, 1429, 1962
BsrBI	CCGCTC	2 cut(s)	622, 657
BsrDI	GCAATG	1 cut(s)	1184
BsrFI	RCCGGY	3 cut(s)	510, 629, 711
BsrI	ACTGG	4 cut(s)	152, 529, 1447, 1696
BssAI	RCCGGY	3 cut(s)	510, 629, 711
BssECI	CCNNGG	4 cut(s)	162, 172, 284, 441
BssNAI	GTATAC	1 cut(s)	942
BssNI	GRCGYC	4 cut(s)	138, 348, 796, 1111
BssSI	CACGAG	3 cut(s)	521, 569, 575
BssT1I	CCWWGG	4 cut(s)	162, 172, 284, 441
Bst1107I	GTATAC	1 cut(s)	942
Bst2BI	CACGAG	3 cut(s)	521, 569, 575
Bst2UI	CCWGG	3 cut(s)	272, 926, 1153
Bst4CI	ACNGT	4 cut(s)	697, 1297, 1379, 1848
Bst6I	CTCTTC	7 cut(s)	69, 390, 1012, 1049, 1130, 1553, 1724
BstACI	GRCGYC	4 cut(s)	138, 348, 796, 1111
BstAPI	GCANNNNNTGC	1 cut(s)	1877
BstC8I	GCNNGC	9 cut(s)	114, 118, 221, 713, 778, 1224, 1347, 1498, 1578
BstDEI	CTNAG	3 cut(s)	318, 1863, 1950
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	3 cut(s)	42, 1470, 1823
BstFNI	CGCG	4 cut(s)	122, 435, 742, 787
BstH2I	RGCGCY	3 cut(s)	712, 1346, 1503
BstHHI	GCGC	7 cut(s)	122, 711, 766, 886, 1345, 1502, 1663
BstMAI	GTCTC	6 cut(s)	15, 21, 355, 606, 968, 1859
BstMCI	CGRYCG	1 cut(s)	630
BstNI	CCWGG	3 cut(s)	272, 926, 1153
BstNSI	RCATGY	2 cut(s)	120, 965
BstSCI	CCNGG	3 cut(s)	270, 924, 1151
BstSFI	CTRYAG	1 cut(s)	869
BstUI	CGCG	4 cut(s)	122, 435, 742, 787
BstV2I	GAAGAC	5 cut(s)	273, 486, 822, 1391, 1849
BstX2I	RGATCY	4 cut(s)	235, 274, 421, 1030
BstYI	RGATCY	4 cut(s)	235, 274, 421, 1030
BstZ17I	GTATAC	1 cut(s)	942
BsuRI	GGCC	6 cut(s)	161, 654, 776, 1156, 1174, 1957
BtgI	CCRYGG	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	323
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	42, 1470, 1823
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	67, 1320
BveI	ACCTGC	2 cut(s)	563, 1541
Cac8I	GCNNGC	9 cut(s)	114, 118, 221, 713, 778, 1224, 1347, 1498, 1578
CaiI	CAGNNNCTG	2 cut(s)	1672, 1877
CfoI	GCGC	7 cut(s)	122, 711, 766, 886, 1345, 1502, 1663
Cfr10I	RCCGGY	3 cut(s)	510, 629, 711
Cfr13I	GGNCC	9 cut(s)	331, 508, 583, 616, 952, 967, 1155, 1172, 1956
CpoI	CGGWCCG	1 cut(s)	508
CseI	GACGC	6 cut(s)	119, 127, 456, 726, 793, 1119
Csp6I	GTAC	2 cut(s)	1314, 1701
CspAI	ACCGGT	2 cut(s)	510, 629
CspI	CGGWCCG	1 cut(s)	508
CviAII	CATG	5 cut(s)	117, 163, 263, 893, 962
CviQI	GTAC	2 cut(s)	1314, 1701
DdeI	CTNAG	3 cut(s)	318, 1863, 1950
DriI	GACNNNNNGTC	2 cut(s)	151, 1115
EaeI	YGGCCR	2 cut(s)	159, 774
Eam1104I	CTCTTC	7 cut(s)	69, 390, 1012, 1049, 1130, 1553, 1724
Eam1105I	GACNNNNNGTC	2 cut(s)	151, 1115
EarI	CTCTTC	7 cut(s)	69, 390, 1012, 1049, 1130, 1553, 1724
Eco130I	CCWWGG	4 cut(s)	162, 172, 284, 441
Eco32I	GATATC	1 cut(s)	11
Eco47I	GGWCC	6 cut(s)	331, 508, 583, 616, 952, 967
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	3 cut(s)	270, 924, 1151
EcoRV	GATATC	1 cut(s)	11
EcoT14I	CCWWGG	4 cut(s)	162, 172, 284, 441
ErhI	CCWWGG	4 cut(s)	162, 172, 284, 441
Esp3I	CGTCTC	4 cut(s)	15, 21, 355, 968
FaeI	CATG	5 cut(s)	120, 166, 266, 896, 965
FaqI	GGGAC	3 cut(s)	106, 459, 1702
FatI	CATG	5 cut(s)	116, 162, 262, 892, 961
FauI	CCCGC	4 cut(s)	198, 461, 627, 722
FbaI	TGATCA	1 cut(s)	1324
FblI	GTMKAC	1 cut(s)	941
FokI	GGATG	3 cut(s)	49, 1477, 1810
FspBI	CTAG	7 cut(s)	54, 113, 971, 1311, 1392, 1698, 1710
FspI	TGCGCA	1 cut(s)	1662
GlaI	GCGC	7 cut(s)	121, 710, 765, 885, 1344, 1501, 1662
GsaI	CCCAGC	1 cut(s)	1334
GsuI	CTGGAG	1 cut(s)	446
HaeII	RGCGCY	3 cut(s)	712, 1346, 1503
HaeIII	GGCC	6 cut(s)	161, 654, 776, 1156, 1174, 1957
HapII	CCGG	7 cut(s)	497, 506, 511, 614, 630, 712, 955
HgaI	GACGC	6 cut(s)	119, 127, 456, 726, 793, 1119
HhaI	GCGC	7 cut(s)	122, 711, 766, 886, 1345, 1502, 1663
Hin1I	GRCGYC	4 cut(s)	138, 348, 796, 1111
Hin1II	CATG	5 cut(s)	120, 166, 266, 896, 965
Hin6I	GCGC	7 cut(s)	120, 709, 764, 884, 1343, 1500, 1661
HinP1I	GCGC	7 cut(s)	120, 709, 764, 884, 1343, 1500, 1661
HincII	GTYRAC	1 cut(s)	1239
HindII	GTYRAC	1 cut(s)	1239
HindIII	AAGCTT	1 cut(s)	1944
HpaII	CCGG	7 cut(s)	497, 506, 511, 614, 630, 712, 955
HphI	GGTGA	7 cut(s)	136, 388, 547, 1141, 1319, 1799, 1884
Hpy166II	GTNNAC	4 cut(s)	538, 942, 967, 1239
Hpy188I	TCNGA	9 cut(s)	466, 606, 661, 667, 676, 881, 1109, 1180, 1591
Hpy8I	GTNNAC	4 cut(s)	538, 942, 967, 1239
HpyAV	CCTTC	6 cut(s)	367, 1173, 1299, 1455, 1758, 1968
HpyCH4III	ACNGT	4 cut(s)	697, 1297, 1379, 1848
HpyCH4IV	ACGT	4 cut(s)	30, 95, 348, 796
HpyCH4V	TGCA	4 cut(s)	219, 367, 871, 1718
HpyF3I	CTNAG	3 cut(s)	318, 1863, 1950
HpySE526I	ACGT	4 cut(s)	30, 95, 348, 796
Hsp92I	GRCGYC	4 cut(s)	138, 348, 796, 1111
Hsp92II	CATG	5 cut(s)	120, 166, 266, 896, 965
HspAI	GCGC	7 cut(s)	120, 709, 764, 884, 1343, 1500, 1661
KroI	GCCGGC	1 cut(s)	711
KroNI	GCCGGC	1 cut(s)	713
Ksp22I	TGATCA	1 cut(s)	1324
LmnI	GCTCC	7 cut(s)	103, 294, 548, 563, 627, 996, 1607
LweI	GCATC	2 cut(s)	895, 1595
MaeI	CTAG	7 cut(s)	54, 113, 971, 1311, 1392, 1698, 1710
MaeII	ACGT	4 cut(s)	30, 95, 348, 796
MaeIII	GTNAC	3 cut(s)	131, 932, 1438
MbiI	CCGCTC	2 cut(s)	622, 657
MflI	RGATCY	4 cut(s)	235, 274, 421, 1030
MhlI	GDGCHC	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	6 cut(s)	547, 803, 809, 1521, 1651, 1676
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	9 cut(s)	92, 161, 431, 656, 665, 755, 995, 1175, 1208
MmeI	TCCRAC	6 cut(s)	265, 629, 690, 1074, 1132, 1232
Mox20I	TGGCCA	1 cut(s)	161
MreI	CGCCGGCG	1 cut(s)	711
MroNI	GCCGGC	1 cut(s)	711
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	3 cut(s)	1362, 1397, 1758
MslI	CAYNNNNRTG	1 cut(s)	891
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	4 cut(s)	1613, 1619, 1862, 1874
MspI	CCGG	7 cut(s)	497, 506, 511, 614, 630, 712, 955
MspR9I	CCNGG	3 cut(s)	272, 926, 1153
MvaI	CCWGG	3 cut(s)	272, 926, 1153
MvnI	CGCG	4 cut(s)	122, 435, 742, 787
NaeI	GCCGGC	1 cut(s)	713
NcoI	CCATGG	1 cut(s)	162
NgoMIV	GCCGGC	1 cut(s)	711
NheI	GCTAGC	1 cut(s)	112
NlaIII	CATG	5 cut(s)	120, 166, 266, 896, 965
NlaIV	GGNNCC	5 cut(s)	276, 290, 544, 618, 1447
NmuCI	GTSAC	2 cut(s)	131, 932
NsbI	TGCGCA	1 cut(s)	1662
NspI	RCATGY	2 cut(s)	120, 965
PaeI	GCATGC	1 cut(s)	120
PaqCI	CACCTGC	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PdiI	GCCGGC	1 cut(s)	713
PfeI	GAWTC	3 cut(s)	249, 1085, 1204
PinAI	ACCGGT	2 cut(s)	510, 629
PleI	GAGTC	9 cut(s)	91, 160, 431, 656, 665, 754, 995, 1175, 1208
PpsI	GAGTC	9 cut(s)	91, 160, 431, 656, 665, 754, 995, 1175, 1208
PpuMI	RGGWCCY	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	3 cut(s)	270, 924, 1151
PspFI	CCCAGC	1 cut(s)	1330
PspGI	CCWGG	3 cut(s)	270, 924, 1151
PspN4I	GGNNCC	5 cut(s)	276, 290, 544, 618, 1447
PspPI	GGNCC	9 cut(s)	331, 508, 583, 616, 952, 967, 1155, 1172, 1956
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	873
PstNI	CAGNNNCTG	2 cut(s)	1672, 1877
PsuI	RGATCY	4 cut(s)	235, 274, 421, 1030
PvuII	CAGCTG	1 cut(s)	1862
RsaI	GTAC	2 cut(s)	1315, 1702
RsaNI	GTAC	2 cut(s)	1314, 1701
RseI	CAYNNNNRTG	1 cut(s)	891
Rsr2I	CGGWCCG	1 cut(s)	508
RsrII	CGGWCCG	1 cut(s)	508
SaqAI	TTAA	3 cut(s)	1362, 1397, 1758
Sau96I	GGNCC	9 cut(s)	331, 508, 583, 616, 952, 967, 1155, 1172, 1956
ScaI	AGTACT	1 cut(s)	1315
SchI	GAGTC	9 cut(s)	92, 161, 431, 656, 665, 755, 995, 1175, 1208
ScrFI	CCNGG	3 cut(s)	272, 926, 1153
SduI	GDGCHC	1 cut(s)	576
SfaNI	GCATC	2 cut(s)	895, 1595
SfcI	CTRYAG	1 cut(s)	869
SgrAI	CRCCGGYG	1 cut(s)	711
SinI	GGWCC	6 cut(s)	331, 508, 583, 616, 952, 967
SmiMI	CAYNNNNRTG	1 cut(s)	891
SmlI	CTYRAG	1 cut(s)	1456
SmoI	CTYRAG	1 cut(s)	1456
SpeI	ACTAGT	1 cut(s)	53
SphI	GCATGC	1 cut(s)	120
Sse9I	AATT	6 cut(s)	547, 803, 809, 1521, 1651, 1676
SspMI	CTAG	7 cut(s)	54, 113, 971, 1311, 1392, 1698, 1710
StyD4I	CCNGG	3 cut(s)	270, 924, 1151
StyI	CCWWGG	4 cut(s)	162, 172, 284, 441
TaaI	ACNGT	4 cut(s)	697, 1297, 1379, 1848
TaiI	ACGT	4 cut(s)	33, 98, 351, 799
TaqI	TCGA	1 cut(s)	1079
TasI	AATT	6 cut(s)	547, 803, 809, 1521, 1651, 1676
TatI	WGTACW	2 cut(s)	1313, 1700
TauI	GCSGC	8 cut(s)	51, 657, 718, 1263, 1616, 1622, 1877, 1957
TfiI	GAWTC	3 cut(s)	249, 1085, 1204
Tru1I	TTAA	3 cut(s)	1362, 1397, 1758
Tru9I	TTAA	3 cut(s)	1362, 1397, 1758
TscAI	CASTG	2 cut(s)	67, 1327
TseFI	GTSAC	2 cut(s)	131, 932
Tsp45I	GTSAC	2 cut(s)	131, 932
TspDTI	ATGAA	5 cut(s)	53, 279, 1145, 1155, 1425
TspGWI	ACGGA	3 cut(s)	33, 39, 1078
TspRI	CASTG	2 cut(s)	67, 1327
VpaK11BI	GGWCC	6 cut(s)	331, 508, 583, 616, 952, 967
XapI	RAATTY	1 cut(s)	1521
XceI	RCATGY	2 cut(s)	120, 965
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	941
XspI	CTAG	7 cut(s)	54, 113, 971, 1311, 1392, 1698, 1710
ZraI	GACGTC	2 cut(s)	349, 797
ZrmI	AGTACT	1 cut(s)	1315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.