Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013706

Physical Location & Seq

Genomic Coordinates Forward (+)

498093 .. 501266

Gene Structure 3174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG003600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1968 bp

ATGGAACGATATCACGACGGAGACGGAGACGTCAGGATGAAAGGTGGCGGCACTAGTGATAGTGGAGAAGAGGTTGAGTCGTGGGGGACGTGGGAGGAGCTCGTGCTAGCATGCGCGGTGAAGCGTCACGGCGTCAAGGACTGGGAGTCGGTGGCCATGGAAGTCCAAGGCAAGACCTCTCTCCCGCAACTCCACACCACCGCCTACAACTGCAAGCGAAAGTATCAGGATCTCCAGCGCCGATTCCACCAAAGCCATGACGACCAGGATCCTATCCCTTGGCTCCACCACCTCAAAGACCTACGCCTCGCTCAGCTTCGTCAGGACCTCCATCGCTACGACGTCTCTATCCTGTCGTTGCAGTTGAAGGTGAAGAAGTTAGAGGAAGAAGAGAAAGACGACGACCCCAAACCAGATCTGGAGGAACGGGACTCCAAGGGACGCACCCGCACCAGATCAGAAGAAGAAGAAGAAGACGACAAAAAGACACCGGACGAACCGGACCGGTTCAAACACGAGAACCAGTCGGTGAACGGCTCCAATTCCACCTGCTCCAAAACCCACGAGCACGAGGAGGGCCACAATCATAAAAAGTCTCCGACTGAACCGGACCCGCTCCCGGCCGGTTCGGCTCAACCCTCCAAAGGCCGCTCGGACTCCGACGACGACTCGGATAAAGGAAGCTGTGAAACCGTCGCCAAGAAGCGCCGGCGGCAAGAGAGGGGCGCGGCGGCGTCGCGTGAGTCGGGGAGTAGTGAGGCGCAGAGTTCGGCGAGCTTGACGCGGAAACGACGTCGTAAATTGGAATTGGAAGACCAGCCTGACGAACGAGTATTGGGGAAATCACAGCCGTTGGCTGCCATTCTGCAGATGATCCGAGCGCATCAGCATGGCTCATTGTTCCAGCGACGGCTTACAAGCCAGGAAAGTGACAAGTATACGAATATGGTCCGGCAGCATGTGGACCTAGAGACGATACAAACAAGGCTCCAAAAGGACTCCTATTCCACGCTCACATTCTACCGGGATCTCCTTCTCCTCTTGTCCAACGCCGTCGTTTTCTTCCCCAAATCATCAACTGAATCCGTCGCTGCTCACCAACTCCGACGCCTTGTCTTGAACGAAATGAAGAAGAGAAATCTAATCACCAGGCCCGACCCTTCATCTGGGCCGTCAGACTCATTGCCCTCCCAAACAACGATTCCAACAGACTCGTTGCTTGCCAAACACAAGTCAACAGCACCCATTATTGTCTGCCGCAAACGAAGCTCAATCTCATCAAAGCCTTCCACCATTGCTCGTAAGGCTAGTACTACTACTGATCACCCAGCAGCAGAAGCGCCAGCAGCTTTTGATATTAAACCACCCAATAACAGTACGAAGACCTCAAACTTAAACAATGTAGATGAAGATAATGGATCGAAAGAGAAACCTGTAACTGGAACCAGAAGCTCAAGAAGGACGACAACTACTCATCATCACGACAATAATGCTGGCGCTTCCTCCACCAAGAAAAAAATTTCAAGCCCTGCGGAAACTCCCAAAGCAGGTAAGAAGAGGAAAACCCCAGAGCCAGCGACAGCATCGGACAAAAAGAGAAGTGGCGCAGCGGCAGCGGCGGCCGATTTCCTGAAAAGAATAAAGCGTAATTCTCCTGCGCAGCAGAAATTGAAATTGAACGGTGGGACTGGCTCTAGTACAAGTACTAGAGGTGCAGAGCAGAAGAAGAGGGGAGCTAATAAGACTGACAAGGTTAAAGGAAGGGTGTCAAGGCAAAGTGGCGGTGAAAATAAGAAACAAGTGAAAGAAGAAAGCAGTCCATCCAAGCGAAGTATAGGAAGACCGTCCAAGAGGGCAGCTGAGACAGCAGCGGCTGCCAATGTAGTTTCACCGAAGCGATCAAGGGAAAATGGGGGGAAGCAGCAGCAAGAATCTTCTAAGCGGCCCAAAAAACGATCCCGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain Myb_DNA-binding

Protein Analysis

655

Amino Acids

72.89

Weight (kDa)

9.78

Isoelectric Point (pI)

67.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	27 - 76	9.9e-06	Myb-like DNA-binding domain
Bromodomain	PF00439	287 - 366	2.3e-09	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g00180 FvH4_7g00180
malus_domestica	MD02G1318400.v1.1 MD07G1002900.v1.1 MD07G1247400.v1.1
prunus_persica	Prupe.2G004300_v2.0.a1
pyrus_communis	pycom02g26660 pycom07g00290
rosa_chinensis	RchiOBHm_Chr1g0313431
rosa_laevigata	RLG00000030797
rosa_roxburghii	Rroxscaffold_4G00332190
rosa_rugosa	RorugPtG0005000.1
rosa_samantha	Rh1AG003600 Rh1BG000500 Rh1CG001100 Rh1CG007900 Rh1DG003400
rosa_wichuraiana	Rw1G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	557
AasI	GACNNNNNNGTC	1 cut(s)	29
AatII	GACGTC	3 cut(s)	33, 345, 796
Acc16I	TGCGCA	1 cut(s)	1659
Acc36I	ACCTGC	2 cut(s)	557, 1538
AccBSI	CCGCTC	2 cut(s)	616, 651
AccI	GTMKAC	1 cut(s)	938
AccII	CGCG	4 cut(s)	116, 728, 739, 784
AclWI	GGATC	7 cut(s)	237, 263, 276, 868, 1035, 1426, 1950
AcoI	YGGCCR	3 cut(s)	153, 621, 1620
AcsI	RAATTY	1 cut(s)	1518
AcyI	GRCGYC	6 cut(s)	30, 132, 342, 734, 793, 1108
AfaI	GTAC	4 cut(s)	1312, 1378, 1699, 1705
AfiI	CCNNNNNNNGG	5 cut(s)	619, 644, 1166, 1439, 1547
AgeI	ACCGGT	1 cut(s)	504
AgsI	TTSAA	6 cut(s)	367, 511, 1120, 1524, 1672, 1678
AhdI	GACNNNNNGTC	2 cut(s)	145, 1112
AhlI	ACTAGT	1 cut(s)	53
AjiI	CACGTC	1 cut(s)	90
AjnI	CCWGG	3 cut(s)	264, 921, 1148
AjuI	GAANNNNNNNTTGG	2 cut(s)	1185, 1217
AluBI	AGCT	9 cut(s)	100, 316, 684, 777, 1269, 1349, 1452, 1736, 1859
AluI	AGCT	9 cut(s)	100, 316, 684, 777, 1269, 1349, 1452, 1736, 1859
Alw21I	GWGCWC	2 cut(s)	102, 570
Alw26I	GTCTC	6 cut(s)	15, 21, 349, 600, 965, 1856
AlwI	GGATC	7 cut(s)	237, 263, 276, 868, 1035, 1426, 1950
AlwNI	CAGNNNCTG	1 cut(s)	1874
AoxI	GGCC	8 cut(s)	153, 577, 621, 646, 1151, 1169, 1620, 1943
ApoI	RAATTY	1 cut(s)	1518
AsiGI	ACCGGT	1 cut(s)	504
AspS9I	GGNCC	9 cut(s)	325, 502, 577, 610, 949, 964, 1152, 1169, 1944
AsuC2I	CCSGG	2 cut(s)	620, 1025
AsuHPI	GGTGA	8 cut(s)	130, 382, 541, 1088, 1138, 1316, 1796, 1881
AsuNHI	GCTAGC	1 cut(s)	106
AvaII	GGWCC	5 cut(s)	325, 502, 610, 949, 964
BalI	TGGCCA	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	102
BauI	CACGAG	4 cut(s)	101, 515, 563, 569
BbsI	GAAGAC	4 cut(s)	480, 819, 1388, 1846
Bbv12I	GWGCWC	2 cut(s)	102, 570
BccI	CCATC	2 cut(s)	339, 1828
BceAI	ACGGC	6 cut(s)	145, 550, 835, 926, 1037, 1156
BcgI	CGANNNNNNTGC	2 cut(s)	1472, 1506
BciT130I	CCWGG	3 cut(s)	266, 923, 1150
BclI	TGATCA	1 cut(s)	1321
BcnI	CCSGG	2 cut(s)	620, 1025
BcoDI	GTCTC	6 cut(s)	15, 21, 349, 600, 965, 1856
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	6 cut(s)	54, 107, 968, 1308, 1695, 1707
BfmI	CTRYAG	1 cut(s)	866
BfoI	RGCGCY	4 cut(s)	241, 709, 1343, 1500
BfuAI	ACCTGC	2 cut(s)	557, 1538
BglI	GCCNNNNNGGC	1 cut(s)	629
BglII	AGATCT	1 cut(s)	415
BlpI	GCTNAGC	1 cut(s)	312
BmcAI	AGTACT	2 cut(s)	1312, 1705
Bme1390I	CCNGG	5 cut(s)	266, 620, 923, 1025, 1150
Bme18I	GGWCC	5 cut(s)	325, 502, 610, 949, 964
BmeRI	GACNNNNNGTC	2 cut(s)	145, 1112
BmgBI	CACGTC	1 cut(s)	90
BmgT120I	GGNCC	9 cut(s)	325, 502, 577, 610, 949, 964, 1152, 1169, 1944
BmiI	GGNNCC	6 cut(s)	270, 284, 538, 612, 989, 1444
BmrFI	CCNGG	5 cut(s)	266, 620, 923, 1025, 1150
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	892, 1592
BmtI	GCTAGC	1 cut(s)	110
BmuI	ACTGGG	1 cut(s)	151
BpiI	GAAGAC	4 cut(s)	480, 819, 1388, 1846
BpmI	CTGGAG	2 cut(s)	218, 440
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	1438
BpuMI	CCSGG	2 cut(s)	620, 1025
BsaHI	GRCGYC	6 cut(s)	30, 132, 342, 734, 793, 1108
BsaJI	CCNNGG	4 cut(s)	156, 166, 278, 435
BsaWI	WCCGGW	4 cut(s)	490, 499, 504, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	5 cut(s)	619, 644, 1166, 1439, 1547
Bse118I	RCCGGY	3 cut(s)	504, 623, 708
Bse1I	ACTGG	4 cut(s)	146, 523, 1444, 1693
Bse3DI	GCAATG	2 cut(s)	1181, 1293
BseBI	CCWGG	3 cut(s)	266, 923, 1150
BseDI	CCNNGG	4 cut(s)	156, 166, 278, 435
BseGI	GGATG	2 cut(s)	42, 1820
BseLI	CCNNNNNNNGG	5 cut(s)	619, 644, 1166, 1439, 1547
BseMI	GCAATG	2 cut(s)	1181, 1293
BseMII	CTCAG	2 cut(s)	326, 1851
BseNI	ACTGG	4 cut(s)	146, 523, 1444, 1693
BseRI	GAGGAG	3 cut(s)	110, 587, 1028
BseX3I	CGGCCG	2 cut(s)	621, 1620
BseYI	CCCAGC	1 cut(s)	1327
BsgI	GTGCAG	1 cut(s)	1734
Bsh1236I	CGCG	4 cut(s)	116, 728, 739, 784
Bsh1285I	CGRYCG	2 cut(s)	624, 1623
BshFI	GGCC	8 cut(s)	155, 579, 623, 648, 1153, 1171, 1622, 1945
BshTI	ACCGGT	1 cut(s)	504
BsiEI	CGRYCG	2 cut(s)	624, 1623
BsiHKAI	GWGCWC	2 cut(s)	102, 570
BsiSI	CCGG	9 cut(s)	491, 500, 505, 608, 620, 624, 709, 952, 1024
BslFI	GGGAC	4 cut(s)	100, 443, 453, 1699
BslI	CCNNNNNNNGG	5 cut(s)	619, 644, 1166, 1439, 1547
BsmAI	GTCTC	6 cut(s)	15, 21, 349, 600, 965, 1856
BsmBI	CGTCTC	4 cut(s)	15, 21, 349, 965
BsmFI	GGGAC	4 cut(s)	100, 443, 453, 1699
BsnI	GGCC	8 cut(s)	155, 579, 623, 648, 1153, 1171, 1622, 1945
Bsp1286I	GDGCHC	2 cut(s)	102, 570
Bsp1720I	GCTNAGC	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	156
BspANI	GGCC	8 cut(s)	155, 579, 623, 648, 1153, 1171, 1622, 1945
BspCNI	CTCAG	2 cut(s)	325, 1852
BspFNI	CGCG	4 cut(s)	116, 728, 739, 784
BspLI	GGNNCC	6 cut(s)	270, 284, 538, 612, 989, 1444
BspMAI	CTGCAG	1 cut(s)	870
BspMI	ACCTGC	2 cut(s)	557, 1538
BspOI	GCTAGC	1 cut(s)	110
BspPI	GGATC	7 cut(s)	237, 263, 276, 868, 1035, 1426, 1950
BsrBI	CCGCTC	2 cut(s)	616, 651
BsrDI	GCAATG	2 cut(s)	1181, 1293
BsrFI	RCCGGY	3 cut(s)	504, 623, 708
BsrI	ACTGG	4 cut(s)	146, 523, 1444, 1693
BssAI	RCCGGY	3 cut(s)	504, 623, 708
BssECI	CCNNGG	4 cut(s)	156, 166, 278, 435
BssNAI	GTATAC	1 cut(s)	939
BssNI	GRCGYC	6 cut(s)	30, 132, 342, 734, 793, 1108
BssSI	CACGAG	4 cut(s)	101, 515, 563, 569
BssT1I	CCWWGG	4 cut(s)	156, 166, 278, 435
Bst1107I	GTATAC	1 cut(s)	939
Bst2BI	CACGAG	4 cut(s)	101, 515, 563, 569
Bst2UI	CCWGG	3 cut(s)	266, 923, 1150
Bst4CI	ACNGT	4 cut(s)	694, 1376, 1682, 1845
Bst6I	CTCTTC	5 cut(s)	63, 384, 1127, 1550, 1721
BstACI	GRCGYC	6 cut(s)	30, 132, 342, 734, 793, 1108
BstAPI	GCANNNNNTGC	1 cut(s)	1874
BstC8I	GCNNGC	9 cut(s)	108, 112, 215, 710, 775, 1221, 1344, 1495, 1575
BstDEI	CTNAG	3 cut(s)	312, 1860, 1938
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	42, 1820
BstFNI	CGCG	4 cut(s)	116, 728, 739, 784
BstH2I	RGCGCY	4 cut(s)	241, 709, 1343, 1500
BstMAI	GTCTC	6 cut(s)	15, 21, 349, 600, 965, 1856
BstMCI	CGRYCG	2 cut(s)	624, 1623
BstNI	CCWGG	3 cut(s)	266, 923, 1150
BstNSI	RCATGY	2 cut(s)	114, 962
BstSCI	CCNGG	5 cut(s)	264, 618, 921, 1023, 1148
BstSFI	CTRYAG	1 cut(s)	866
BstUI	CGCG	4 cut(s)	116, 728, 739, 784
BstV2I	GAAGAC	4 cut(s)	480, 819, 1388, 1846
BstX2I	RGATCY	4 cut(s)	229, 268, 415, 1027
BstYI	RGATCY	4 cut(s)	229, 268, 415, 1027
BstZ17I	GTATAC	1 cut(s)	939
BstZI	CGGCCG	2 cut(s)	621, 1620
BsuRI	GGCC	8 cut(s)	155, 579, 623, 648, 1153, 1171, 1622, 1945
BtgI	CCRYGG	1 cut(s)	156
BtgZI	GCGATG	1 cut(s)	317
BtrI	CACGTC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	42, 1820
BveI	ACCTGC	2 cut(s)	557, 1538
Cac8I	GCNNGC	9 cut(s)	108, 112, 215, 710, 775, 1221, 1344, 1495, 1575
CaiI	CAGNNNCTG	1 cut(s)	1874
Cfr10I	RCCGGY	3 cut(s)	504, 623, 708
Cfr13I	GGNCC	9 cut(s)	325, 502, 577, 610, 949, 964, 1152, 1169, 1944
CpoI	CGGWCCG	1 cut(s)	502
CseI	GACGC	6 cut(s)	113, 121, 450, 723, 790, 1116
Csp6I	GTAC	4 cut(s)	1311, 1377, 1698, 1704
CspAI	ACCGGT	1 cut(s)	504
CspI	CGGWCCG	1 cut(s)	502
CviAII	CATG	5 cut(s)	111, 157, 257, 890, 959
CviQI	GTAC	4 cut(s)	1311, 1377, 1698, 1704
DdeI	CTNAG	3 cut(s)	312, 1860, 1938
DrdI	GACNNNNNNGTC	1 cut(s)	29
DriI	GACNNNNNGTC	2 cut(s)	145, 1112
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	3 cut(s)	153, 621, 1620
EagI	CGGCCG	2 cut(s)	621, 1620
Eam1104I	CTCTTC	5 cut(s)	63, 384, 1127, 1550, 1721
Eam1105I	GACNNNNNGTC	2 cut(s)	145, 1112
EarI	CTCTTC	5 cut(s)	63, 384, 1127, 1550, 1721
Ecl136II	GAGCTC	1 cut(s)	100
EclXI	CGGCCG	2 cut(s)	621, 1620
Eco130I	CCWWGG	4 cut(s)	156, 166, 278, 435
Eco24I	GRGCYC	1 cut(s)	102
Eco32I	GATATC	1 cut(s)	11
Eco47I	GGWCC	5 cut(s)	325, 502, 610, 949, 964
Eco52I	CGGCCG	2 cut(s)	621, 1620
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	3 cut(s)	264, 921, 1148
EcoRV	GATATC	1 cut(s)	11
EcoT14I	CCWWGG	4 cut(s)	156, 166, 278, 435
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	4 cut(s)	156, 166, 278, 435
Esp3I	CGTCTC	4 cut(s)	15, 21, 349, 965
FaeI	CATG	5 cut(s)	114, 160, 260, 893, 962
FaiI	YATR	9 cut(s)	112, 158, 258, 588, 891, 939, 947, 960, 1835
FaqI	GGGAC	4 cut(s)	100, 443, 453, 1699
FatI	CATG	5 cut(s)	110, 156, 256, 889, 958
FauI	CCCGC	3 cut(s)	192, 455, 621
FbaI	TGATCA	1 cut(s)	1321
FblI	GTMKAC	1 cut(s)	938
FokI	GGATG	2 cut(s)	49, 1807
FriOI	GRGCYC	1 cut(s)	102
FspBI	CTAG	6 cut(s)	54, 107, 968, 1308, 1695, 1707
FspI	TGCGCA	1 cut(s)	1659
GsaI	CCCAGC	1 cut(s)	1331
GsuI	CTGGAG	2 cut(s)	218, 440
HaeII	RGCGCY	4 cut(s)	241, 709, 1343, 1500
HaeIII	GGCC	8 cut(s)	155, 579, 623, 648, 1153, 1171, 1622, 1945
HapII	CCGG	9 cut(s)	491, 500, 505, 608, 620, 624, 709, 952, 1024
HgaI	GACGC	6 cut(s)	113, 121, 450, 723, 790, 1116
Hin1I	GRCGYC	6 cut(s)	30, 132, 342, 734, 793, 1108
Hin1II	CATG	5 cut(s)	114, 160, 260, 893, 962
HincII	GTYRAC	1 cut(s)	1236
HindII	GTYRAC	1 cut(s)	1236
HpaII	CCGG	9 cut(s)	491, 500, 505, 608, 620, 624, 709, 952, 1024
HphI	GGTGA	8 cut(s)	130, 382, 541, 1088, 1138, 1316, 1796, 1881
Hpy166II	GTNNAC	4 cut(s)	532, 939, 964, 1236
Hpy188I	TCNGA	9 cut(s)	460, 600, 655, 661, 673, 878, 1106, 1177, 1588
Hpy8I	GTNNAC	4 cut(s)	532, 939, 964, 1236
HpyAV	CCTTC	7 cut(s)	361, 1043, 1170, 1296, 1452, 1755, 1956
HpyCH4III	ACNGT	4 cut(s)	694, 1376, 1682, 1845
HpyCH4IV	ACGT	4 cut(s)	30, 89, 342, 793
HpyCH4V	TGCA	4 cut(s)	213, 361, 868, 1715
HpyF3I	CTNAG	3 cut(s)	312, 1860, 1938
HpySE526I	ACGT	4 cut(s)	30, 89, 342, 793
Hsp92I	GRCGYC	6 cut(s)	30, 132, 342, 734, 793, 1108
Hsp92II	CATG	5 cut(s)	114, 160, 260, 893, 962
KroI	GCCGGC	1 cut(s)	708
KroNI	GCCGGC	1 cut(s)	710
Ksp22I	TGATCA	1 cut(s)	1321
LmnI	GCTCC	7 cut(s)	97, 288, 542, 557, 621, 993, 1733
LweI	GCATC	2 cut(s)	892, 1592
MaeI	CTAG	6 cut(s)	54, 107, 968, 1308, 1695, 1707
MaeII	ACGT	4 cut(s)	30, 89, 342, 793
MaeIII	GTNAC	3 cut(s)	125, 929, 1435
MbiI	CCGCTC	2 cut(s)	616, 651
MflI	RGATCY	4 cut(s)	229, 268, 415, 1027
MhlI	GDGCHC	2 cut(s)	102, 570
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	7 cut(s)	541, 800, 806, 1518, 1648, 1667, 1673
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	9 cut(s)	86, 155, 425, 650, 662, 752, 992, 1172, 1205
MmeI	TCCRAC	5 cut(s)	623, 684, 1071, 1129, 1229
Mox20I	TGGCCA	1 cut(s)	155
MreI	CGCCGGCG	1 cut(s)	708
MroNI	GCCGGC	1 cut(s)	708
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	3 cut(s)	1359, 1394, 1755
MslI	CAYNNNNRTG	1 cut(s)	888
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	4 cut(s)	1610, 1616, 1859, 1871
MspI	CCGG	9 cut(s)	491, 500, 505, 608, 620, 624, 709, 952, 1024
MspR9I	CCNGG	5 cut(s)	266, 620, 923, 1025, 1150
MvaI	CCWGG	3 cut(s)	266, 923, 1150
MvnI	CGCG	4 cut(s)	116, 728, 739, 784
NaeI	GCCGGC	1 cut(s)	710
NciI	CCSGG	2 cut(s)	620, 1025
NcoI	CCATGG	1 cut(s)	156
NgoMIV	GCCGGC	1 cut(s)	708
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	5 cut(s)	114, 160, 260, 893, 962
NlaIV	GGNNCC	6 cut(s)	270, 284, 538, 612, 989, 1444
NmuCI	GTSAC	2 cut(s)	125, 929
NsbI	TGCGCA	1 cut(s)	1659
NspI	RCATGY	2 cut(s)	114, 962
PaeI	GCATGC	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	710
PfeI	GAWTC	4 cut(s)	243, 1082, 1201, 1931
PinAI	ACCGGT	1 cut(s)	504
PleI	GAGTC	9 cut(s)	85, 154, 425, 650, 662, 751, 992, 1172, 1205
PpsI	GAGTC	9 cut(s)	85, 154, 425, 650, 662, 751, 992, 1172, 1205
PpuMI	RGGWCCY	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	3 cut(s)	264, 921, 1148
PspFI	CCCAGC	1 cut(s)	1327
PspGI	CCWGG	3 cut(s)	264, 921, 1148
PspN4I	GGNNCC	6 cut(s)	270, 284, 538, 612, 989, 1444
PspPI	GGNCC	9 cut(s)	325, 502, 577, 610, 949, 964, 1152, 1169, 1944
PspPPI	RGGWCCY	1 cut(s)	325
PstI	CTGCAG	1 cut(s)	870
PstNI	CAGNNNCTG	1 cut(s)	1874
PsuI	RGATCY	4 cut(s)	229, 268, 415, 1027
PvuII	CAGCTG	1 cut(s)	1859
RsaI	GTAC	4 cut(s)	1312, 1378, 1699, 1705
RsaNI	GTAC	4 cut(s)	1311, 1377, 1698, 1704
RseI	CAYNNNNRTG	1 cut(s)	888
Rsr2I	CGGWCCG	1 cut(s)	502
RsrII	CGGWCCG	1 cut(s)	502
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	1359, 1394, 1755
Sau96I	GGNCC	9 cut(s)	325, 502, 577, 610, 949, 964, 1152, 1169, 1944
ScaI	AGTACT	2 cut(s)	1312, 1705
SchI	GAGTC	9 cut(s)	86, 155, 425, 650, 662, 752, 992, 1172, 1205
ScrFI	CCNGG	5 cut(s)	266, 620, 923, 1025, 1150
SduI	GDGCHC	2 cut(s)	102, 570
SfaNI	GCATC	2 cut(s)	892, 1592
SfcI	CTRYAG	1 cut(s)	866
SgrAI	CRCCGGYG	1 cut(s)	708
SinI	GGWCC	5 cut(s)	325, 502, 610, 949, 964
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	1 cut(s)	1453
SmoI	CTYRAG	1 cut(s)	1453
SpeI	ACTAGT	1 cut(s)	53
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	7 cut(s)	541, 800, 806, 1518, 1648, 1667, 1673
SspMI	CTAG	6 cut(s)	54, 107, 968, 1308, 1695, 1707
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	5 cut(s)	264, 618, 921, 1023, 1148
StyI	CCWWGG	4 cut(s)	156, 166, 278, 435
TaaI	ACNGT	4 cut(s)	694, 1376, 1682, 1845
TaiI	ACGT	4 cut(s)	33, 92, 345, 796
TaqI	TCGA	1 cut(s)	1421
TasI	AATT	7 cut(s)	541, 800, 806, 1518, 1648, 1667, 1673
TatI	WGTACW	3 cut(s)	1310, 1697, 1703
TfiI	GAWTC	4 cut(s)	243, 1082, 1201, 1931
Tru1I	TTAA	3 cut(s)	1359, 1394, 1755
Tru9I	TTAA	3 cut(s)	1359, 1394, 1755
TseFI	GTSAC	2 cut(s)	125, 929
Tsp45I	GTSAC	2 cut(s)	125, 929
TspDTI	ATGAA	4 cut(s)	53, 1142, 1152, 1422
TspGWI	ACGGA	3 cut(s)	33, 39, 1075
VpaK11BI	GGWCC	5 cut(s)	325, 502, 610, 949, 964
XapI	RAATTY	1 cut(s)	1518
XceI	RCATGY	2 cut(s)	114, 962
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	938
XspI	CTAG	6 cut(s)	54, 107, 968, 1308, 1695, 1707
ZraI	GACGTC	3 cut(s)	31, 343, 794
ZrmI	AGTACT	2 cut(s)	1312, 1705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.