60S ribosomal Protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD08G1025600.v1.1 MD13G1126200.v1.1 MD15G1041600.v1.1 MD15G1197600.v1.1 MD17G1135200.v1.1 |
| pyrus_communis | pycom12g08950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 173 |
| Acc16I | TGCGCA | 1 cut(s) | 161 |
| AccB1I | GGYRCC | 1 cut(s) | 410 |
| AccBSI | CCGCTC | 1 cut(s) | 259 |
| AccII | CGCG | 2 cut(s) | 207, 387 |
| AclWI | GGATC | 3 cut(s) | 269, 998, 1111 |
| AcsI | RAATTY | 2 cut(s) | 487, 1085 |
| AcuI | CTGAAG | 1 cut(s) | 847 |
| AfaI | GTAC | 2 cut(s) | 230, 1147 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 241, 274, 316, 346, 586, 901, 1155 |
| AflIII | ACRYGT | 1 cut(s) | 951 |
| AgsI | TTSAA | 3 cut(s) | 806, 1109, 1204 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 355 |
| AjiI | CACGTC | 1 cut(s) | 952 |
| AjnI | CCWGG | 2 cut(s) | 177, 222 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 528, 560 |
| AluBI | AGCT | 4 cut(s) | 334, 625, 760, 935 |
| AluI | AGCT | 4 cut(s) | 334, 625, 760, 935 |
| Alw26I | GTCTC | 1 cut(s) | 363 |
| AlwI | GGATC | 3 cut(s) | 269, 998, 1111 |
| Ama87I | CYCGRG | 1 cut(s) | 267 |
| AoxI | GGCC | 3 cut(s) | 202, 375, 382 |
| ApeKI | GCWGC | 4 cut(s) | 607, 622, 760, 857 |
| ApoI | RAATTY | 2 cut(s) | 487, 1085 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 678 |
| AspLEI | GCGC | 2 cut(s) | 162, 389 |
| AspS9I | GGNCC | 8 cut(s) | 175, 192, 202, 285, 349, 367, 382, 474 |
| AsuHPI | GGTGA | 5 cut(s) | 256, 289, 319, 412, 1082 |
| AsuNHI | GCTAGC | 1 cut(s) | 1163 |
| AvaI | CYCGRG | 1 cut(s) | 267 |
| AvaII | GGWCC | 6 cut(s) | 175, 192, 285, 349, 367, 474 |
| BaeGI | GKGCMC | 1 cut(s) | 413 |
| BanI | GGYRCC | 1 cut(s) | 410 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 611, 643 |
| BbvI | GCAGC | 4 cut(s) | 594, 634, 747, 844 |
| BccI | CCATC | 3 cut(s) | 904, 967, 1254 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 139, 173, 562, 596 |
| BciT130I | CCWGG | 2 cut(s) | 179, 224 |
| BcoDI | GTCTC | 1 cut(s) | 363 |
| BfaI | CTAG | 6 cut(s) | 62, 503, 659, 875, 932, 1164 |
| BfmI | CTRYAG | 2 cut(s) | 723, 1090 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 210 |
| BisI | GCNGC | 8 cut(s) | 205, 385, 390, 393, 608, 623, 761, 858 |
| BlpI | GCTNAGC | 1 cut(s) | 936 |
| BlsI | GCNGC | 8 cut(s) | 206, 386, 391, 394, 609, 624, 762, 859 |
| Bme1390I | CCNGG | 2 cut(s) | 179, 224 |
| Bme18I | GGWCC | 6 cut(s) | 175, 192, 285, 349, 367, 474 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 355 |
| BmeT110I | CYCGRG | 1 cut(s) | 267 |
| BmgBI | CACGTC | 1 cut(s) | 952 |
| BmgT120I | GGNCC | 8 cut(s) | 175, 192, 202, 285, 349, 367, 382, 474 |
| BmiI | GGNNCC | 3 cut(s) | 193, 286, 412 |
| BmrFI | CCNGG | 2 cut(s) | 179, 224 |
| BmsI | GCATC | 2 cut(s) | 141, 312 |
| BmtI | GCTAGC | 1 cut(s) | 1167 |
| BoxI | GACNNNNGTC | 1 cut(s) | 836 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 669, 701 |
| BpmI | CTGGAG | 2 cut(s) | 120, 482 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 936 |
| Bsa29I | ATCGAT | 1 cut(s) | 149 |
| BsaJI | CCNNGG | 2 cut(s) | 315, 378 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 241, 274, 316, 346, 586, 901, 1155 |
| Bse118I | RCCGGY | 1 cut(s) | 154 |
| BseBI | CCWGG | 2 cut(s) | 179, 224 |
| BseCI | ATCGAT | 1 cut(s) | 149 |
| BseDI | CCNNGG | 2 cut(s) | 315, 378 |
| BseGI | GGATG | 4 cut(s) | 246, 925, 1020, 1239 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 241, 274, 316, 346, 586, 901, 1155 |
| BseMII | CTCAG | 2 cut(s) | 927, 1055 |
| BseRI | GAGGAG | 3 cut(s) | 118, 123, 893 |
| BseSI | GKGCMC | 1 cut(s) | 413 |
| BseXI | GCAGC | 4 cut(s) | 594, 634, 747, 844 |
| BsgI | GTGCAG | 1 cut(s) | 790 |
| Bsh1236I | CGCG | 2 cut(s) | 207, 387 |
| Bsh1285I | CGRYCG | 1 cut(s) | 149 |
| BshFI | GGCC | 3 cut(s) | 204, 377, 384 |
| BshNI | GGYRCC | 1 cut(s) | 410 |
| BshVI | ATCGAT | 1 cut(s) | 149 |
| BsiEI | CGRYCG | 1 cut(s) | 149 |
| BsiHKCI | CYCGRG | 1 cut(s) | 267 |
| BsiSI | CCGG | 2 cut(s) | 155, 235 |
| BslFI | GGGAC | 2 cut(s) | 205, 877 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 241, 274, 316, 346, 586, 901, 1155 |
| BsmAI | GTCTC | 1 cut(s) | 363 |
| BsmFI | GGGAC | 2 cut(s) | 205, 877 |
| BsnI | GGCC | 3 cut(s) | 204, 377, 384 |
| BsoBI | CYCGRG | 1 cut(s) | 267 |
| Bsp1286I | GDGCHC | 1 cut(s) | 413 |
| Bsp143I | GATC | 4 cut(s) | 146, 261, 1003, 1116 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 936 |
| BspANI | GGCC | 3 cut(s) | 204, 377, 384 |
| BspCNI | CTCAG | 2 cut(s) | 928, 1056 |
| BspDI | ATCGAT | 1 cut(s) | 149 |
| BspFNI | CGCG | 2 cut(s) | 207, 387 |
| BspHI | TCATGA | 1 cut(s) | 753 |
| BspLI | GGNNCC | 3 cut(s) | 193, 286, 412 |
| BspMAI | CTGCAG | 1 cut(s) | 1094 |
| BspOI | GCTAGC | 1 cut(s) | 1167 |
| BspPI | GGATC | 3 cut(s) | 269, 998, 1111 |
| BspT107I | GGYRCC | 1 cut(s) | 410 |
| BsrBI | CCGCTC | 1 cut(s) | 259 |
| BsrFI | RCCGGY | 1 cut(s) | 154 |
| BssAI | RCCGGY | 1 cut(s) | 154 |
| BssECI | CCNNGG | 2 cut(s) | 315, 378 |
| BssMI | GATC | 4 cut(s) | 146, 261, 1003, 1116 |
| BssT1I | CCWWGG | 2 cut(s) | 315, 378 |
| Bst2UI | CCWGG | 2 cut(s) | 179, 224 |
| Bst4CI | ACNGT | 6 cut(s) | 292, 697, 727, 768, 796, 810 |
| Bst6I | CTCTTC | 1 cut(s) | 1026 |
| BstC8I | GCNNGC | 3 cut(s) | 605, 740, 1165 |
| BstDEI | CTNAG | 4 cut(s) | 6, 936, 1064, 1142 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 344 |
| BstF5I | GGATG | 4 cut(s) | 246, 925, 1020, 1239 |
| BstFNI | CGCG | 2 cut(s) | 207, 387 |
| BstHHI | GCGC | 2 cut(s) | 162, 389 |
| BstKTI | GATC | 4 cut(s) | 149, 264, 1006, 1119 |
| BstMAI | GTCTC | 1 cut(s) | 363 |
| BstMBI | GATC | 4 cut(s) | 146, 261, 1003, 1116 |
| BstMCI | CGRYCG | 1 cut(s) | 149 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 210, 631, 866 |
| BstNI | CCWGG | 2 cut(s) | 179, 224 |
| BstNSI | RCATGY | 1 cut(s) | 911 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 836 |
| BstSCI | CCNGG | 2 cut(s) | 177, 222 |
| BstSFI | CTRYAG | 2 cut(s) | 723, 1090 |
| BstSLI | GKGCMC | 1 cut(s) | 413 |
| BstUI | CGCG | 2 cut(s) | 207, 387 |
| BstV1I | GCAGC | 4 cut(s) | 594, 634, 747, 844 |
| Bsu15I | ATCGAT | 1 cut(s) | 149 |
| BsuRI | GGCC | 3 cut(s) | 204, 377, 384 |
| BsuTUI | ATCGAT | 1 cut(s) | 149 |
| BtrI | CACGTC | 1 cut(s) | 952 |
| BtsCI | GGATG | 4 cut(s) | 246, 925, 1020, 1239 |
| BtsI | GCAGTG | 1 cut(s) | 573 |
| BtsIMutI | CAGTG | 2 cut(s) | 573, 732 |
| Cac8I | GCNNGC | 3 cut(s) | 605, 740, 1165 |
| CciI | TCATGA | 1 cut(s) | 753 |
| CfoI | GCGC | 2 cut(s) | 162, 389 |
| Cfr10I | RCCGGY | 1 cut(s) | 154 |
| Cfr13I | GGNCC | 8 cut(s) | 175, 192, 202, 285, 349, 367, 382, 474 |
| ClaI | ATCGAT | 1 cut(s) | 149 |
| Csp6I | GTAC | 2 cut(s) | 229, 1146 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 708, 743 |
| CviAII | CATG | 4 cut(s) | 436, 616, 754, 908 |
| CviQI | GTAC | 2 cut(s) | 229, 1146 |
| DdeI | CTNAG | 4 cut(s) | 6, 936, 1064, 1142 |
| DpnI | GATC | 4 cut(s) | 148, 263, 1005, 1118 |
| DpnII | GATC | 4 cut(s) | 146, 261, 1003, 1116 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 173 |
| DriI | GACNNNNNGTC | 1 cut(s) | 355 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 173 |
| Eam1104I | CTCTTC | 1 cut(s) | 1026 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 355 |
| EarI | CTCTTC | 1 cut(s) | 1026 |
| EciI | GGCGGA | 1 cut(s) | 326 |
| Eco130I | CCWWGG | 2 cut(s) | 315, 378 |
| Eco32I | GATATC | 3 cut(s) | 433, 885, 919 |
| Eco47I | GGWCC | 6 cut(s) | 175, 192, 285, 349, 367, 474 |
| Eco57I | CTGAAG | 1 cut(s) | 847 |
| Eco88I | CYCGRG | 1 cut(s) | 267 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 344 |
| EcoO109I | RGGNCCY | 1 cut(s) | 192 |
| EcoRI | GAATTC | 1 cut(s) | 1085 |
| EcoRII | CCWGG | 2 cut(s) | 177, 222 |
| EcoRV | GATATC | 3 cut(s) | 433, 885, 919 |
| EcoT14I | CCWWGG | 2 cut(s) | 315, 378 |
| ErhI | CCWWGG | 2 cut(s) | 315, 378 |
| FaeI | CATG | 4 cut(s) | 439, 619, 757, 911 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1122, 1154 |
| FaqI | GGGAC | 2 cut(s) | 205, 877 |
| FatI | CATG | 4 cut(s) | 435, 615, 753, 907 |
| FauI | CCCGC | 1 cut(s) | 596 |
| Fnu4HI | GCNGC | 8 cut(s) | 205, 385, 390, 393, 608, 623, 761, 858 |
| FokI | GGATG | 4 cut(s) | 233, 912, 1027, 1246 |
| Fsp4HI | GCNGC | 8 cut(s) | 205, 385, 390, 393, 608, 623, 761, 858 |
| FspBI | CTAG | 6 cut(s) | 62, 503, 659, 875, 932, 1164 |
| FspI | TGCGCA | 1 cut(s) | 161 |
| GlaI | GCGC | 2 cut(s) | 161, 388 |
| GluI | GCNGC | 8 cut(s) | 205, 385, 390, 393, 608, 623, 761, 858 |
| GsuI | CTGGAG | 2 cut(s) | 120, 482 |
| HaeIII | GGCC | 3 cut(s) | 204, 377, 384 |
| HapII | CCGG | 2 cut(s) | 155, 235 |
| HhaI | GCGC | 2 cut(s) | 162, 389 |
| Hin1II | CATG | 4 cut(s) | 439, 619, 757, 911 |
| Hin6I | GCGC | 2 cut(s) | 160, 387 |
| HinP1I | GCGC | 2 cut(s) | 160, 387 |
| HinfI | GANTC | 1 cut(s) | 890 |
| HpaII | CCGG | 2 cut(s) | 155, 235 |
| HphI | GGTGA | 5 cut(s) | 256, 289, 319, 412, 1082 |
| Hpy166II | GTNNAC | 4 cut(s) | 229, 280, 288, 420 |
| Hpy188I | TCNGA | 8 cut(s) | 7, 146, 711, 866, 889, 1065, 1099, 1233 |
| Hpy188III | TCNNGA | 6 cut(s) | 137, 461, 587, 659, 754, 1007 |
| Hpy8I | GTNNAC | 4 cut(s) | 229, 280, 288, 420 |
| Hpy99I | CGWCG | 1 cut(s) | 173 |
| HpyAV | CCTTC | 3 cut(s) | 110, 268, 871 |
| HpyCH4III | ACNGT | 6 cut(s) | 292, 697, 727, 768, 796, 810 |
| HpyCH4IV | ACGT | 2 cut(s) | 514, 951 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 210, 631, 866 |
| HpyF3I | CTNAG | 4 cut(s) | 6, 936, 1064, 1142 |
| HpySE526I | ACGT | 2 cut(s) | 514, 951 |
| Hsp92II | CATG | 4 cut(s) | 439, 619, 757, 911 |
| HspAI | GCGC | 2 cut(s) | 160, 387 |
| Kzo9I | GATC | 4 cut(s) | 146, 261, 1003, 1116 |
| LmnI | GCTCC | 2 cut(s) | 339, 463 |
| Lsp1109I | GCAGC | 4 cut(s) | 594, 634, 747, 844 |
| LweI | GCATC | 2 cut(s) | 141, 312 |
| MaeI | CTAG | 6 cut(s) | 62, 503, 659, 875, 932, 1164 |
| MaeII | ACGT | 2 cut(s) | 514, 951 |
| MaeIII | GTNAC | 1 cut(s) | 714 |
| MalI | GATC | 4 cut(s) | 148, 263, 1005, 1118 |
| MbiI | CCGCTC | 1 cut(s) | 259 |
| MboI | GATC | 4 cut(s) | 146, 261, 1003, 1116 |
| MboII | GAAGA | 5 cut(s) | 674, 677, 1043, 1112, 1220 |
| MhlI | GDGCHC | 1 cut(s) | 413 |
| MlyI | GAGTC | 1 cut(s) | 899 |
| MmeI | TCCRAC | 2 cut(s) | 487, 1002 |
| MroXI | GAANNNNTTC | 1 cut(s) | 678 |
| MseI | TTAA | 7 cut(s) | 18, 35, 48, 56, 596, 653, 776 |
| MspA1I | CMGCKG | 2 cut(s) | 395, 603 |
| MspI | CCGG | 2 cut(s) | 155, 235 |
| MspR9I | CCNGG | 2 cut(s) | 179, 224 |
| MvaI | CCWGG | 2 cut(s) | 179, 224 |
| MvnI | CGCG | 2 cut(s) | 207, 387 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 210, 631, 866 |
| NdeII | GATC | 4 cut(s) | 146, 261, 1003, 1116 |
| NheI | GCTAGC | 1 cut(s) | 1163 |
| NlaIII | CATG | 4 cut(s) | 439, 619, 757, 911 |
| NlaIV | GGNNCC | 3 cut(s) | 193, 286, 412 |
| NsbI | TGCGCA | 1 cut(s) | 161 |
| NspI | RCATGY | 1 cut(s) | 911 |
| PagI | TCATGA | 1 cut(s) | 753 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 288 |
| PdmI | GAANNNNTTC | 1 cut(s) | 678 |
| PflFI | GACNNNGTC | 1 cut(s) | 173 |
| PkrI | GCNGC | 8 cut(s) | 206, 386, 391, 394, 609, 624, 762, 859 |
| Ple19I | CGATCG | 1 cut(s) | 149 |
| PleI | GAGTC | 1 cut(s) | 898 |
| PpsI | GAGTC | 1 cut(s) | 898 |
| PpuMI | RGGWCCY | 1 cut(s) | 192 |
| PshAI | GACNNNNGTC | 1 cut(s) | 836 |
| Psp5II | RGGWCCY | 1 cut(s) | 192 |
| Psp6I | CCWGG | 2 cut(s) | 177, 222 |
| PspGI | CCWGG | 2 cut(s) | 177, 222 |
| PspN4I | GGNNCC | 3 cut(s) | 193, 286, 412 |
| PspPI | GGNCC | 8 cut(s) | 175, 192, 202, 285, 349, 367, 382, 474 |
| PspPPI | RGGWCCY | 1 cut(s) | 192 |
| PstI | CTGCAG | 1 cut(s) | 1094 |
| PsyI | GACNNNGTC | 1 cut(s) | 173 |
| PvuI | CGATCG | 1 cut(s) | 149 |
| RsaI | GTAC | 2 cut(s) | 230, 1147 |
| RsaNI | GTAC | 2 cut(s) | 229, 1146 |
| SaqAI | TTAA | 7 cut(s) | 18, 35, 48, 56, 596, 653, 776 |
| SatI | GCNGC | 8 cut(s) | 205, 385, 390, 393, 608, 623, 761, 858 |
| Sau3AI | GATC | 4 cut(s) | 146, 261, 1003, 1116 |
| Sau96I | GGNCC | 8 cut(s) | 175, 192, 202, 285, 349, 367, 382, 474 |
| SchI | GAGTC | 1 cut(s) | 899 |
| ScrFI | CCNGG | 2 cut(s) | 179, 224 |
| SduI | GDGCHC | 1 cut(s) | 413 |
| SfaNI | GCATC | 2 cut(s) | 141, 312 |
| SfcI | CTRYAG | 2 cut(s) | 723, 1090 |
| SinI | GGWCC | 6 cut(s) | 175, 192, 285, 349, 367, 474 |
| SspMI | CTAG | 6 cut(s) | 62, 503, 659, 875, 932, 1164 |
| StyD4I | CCNGG | 2 cut(s) | 177, 222 |
| StyI | CCWWGG | 2 cut(s) | 315, 378 |
| TaaI | ACNGT | 6 cut(s) | 292, 697, 727, 768, 796, 810 |
| TaiI | ACGT | 2 cut(s) | 517, 954 |
| TaqI | TCGA | 4 cut(s) | 149, 255, 342, 451 |
| TauI | GCSGC | 4 cut(s) | 207, 387, 392, 395 |
| Tru1I | TTAA | 7 cut(s) | 18, 35, 48, 56, 596, 653, 776 |
| Tru9I | TTAA | 7 cut(s) | 18, 35, 48, 56, 596, 653, 776 |
| TscAI | CASTG | 2 cut(s) | 580, 732 |
| TseI | GCWGC | 4 cut(s) | 607, 622, 760, 857 |
| TspDTI | ATGAA | 7 cut(s) | 83, 632, 694, 742, 770, 788, 1031 |
| TspGWI | ACGGA | 1 cut(s) | 1210 |
| TspRI | CASTG | 2 cut(s) | 580, 732 |
| Tth111I | GACNNNGTC | 1 cut(s) | 173 |
| VpaK11BI | GGWCC | 6 cut(s) | 175, 192, 285, 349, 367, 474 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 344 |
| XapI | RAATTY | 2 cut(s) | 487, 1085 |
| XbaI | TCTAGA | 1 cut(s) | 658 |
| XceI | RCATGY | 1 cut(s) | 911 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 185 |
| XmnI | GAANNNNTTC | 1 cut(s) | 678 |
| XspI | CTAG | 6 cut(s) | 62, 503, 659, 875, 932, 1164 |