MD08G1025600.v1.1

60S ribosomal Protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
1846525 .. 1851889
5365 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1025600.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGTCTGAGATGTTTTTTAATTTTTTGGAGAACTTAACAAAACCCTTTAACCCTTTAACCCTAGCAACCATACCCATACCTTTTATTTTTTTTCATTCCCTTCCTCTCTCTCTCTCGTTCCCTGCCTCCTCTCCTCCAGATGTCCGATCGATGCCGGTGCGCAAGGACGACGAGGTCCAGGTCGTGCGTGGGACCTATAAGGGCCGCGAGGGCAAGGTCGTCCAGGTGTACCGCCGGAAGTTGGTCATCCACATCGAGCGGATCACCCGAGAGAAGGTGAACGGGTCCACCGTCAATGTCGGCATCAACCCCTCCAAGGTCGTCATCACCAAGCTCCGCCTCGACAAGGACCGCAAGTCTCTGCTGGACCGCAAGGCCAAGGGCCGCGCCGCCGCTGACAAGGACAAGGGCACCAAGTTCACCGCAGAGGATATCATGCAGAACGATTTTCGACTTCCTCTGGAGCAAAACAGGACCAAATGGACGAATTTTGGAGTAATTCTAGTTGGAGGACGTTTGCGTTTGCCCAATTTGGAAAAGGCTTTTGGTGGGGAGGTTAGAGTTTGTGATTGCACTGCCCTCGTTCTGGATAATTTAACCAGCGGGCTGCAACACATGAAGCAGCTTTACAGGCAATTTATCATTGTGCTTTTAATTCTAGACGAAGAATGGGAAAGAGTTCTTCTCAAAGATACTGTTGGTTTCATTCAGAAGTTACCAACTACAGTGGTAAAATGCTTGCACAATTTATTCATGAAGCTGCTACCGTGCAGTTTAATTTCTCTGCCTCCTACTGTTCATTTTCAACTGTATTGCAAGAAAAATGTTTTGACGAATGTCAGTCCAATGTCATTTGCTGCCTTCAGAGCAACACTAGAGGAGATATCAGAGTCCCCATCATTGGTGCATGTGGTGGATATCAGTCATCCACTAGCTGAGCAACAGATAGACGTGTCTGCAATTCCAAAGTTGATGGTGTGGAACAAGGTTGATAAGTTTAGCGATCCTGAAAGGATGAAGTTGGAAGCAGAAGAGAGAGATGATGTGATTTGCATATCTGCTCTGAGTGGTGAGGGTATAACTGAATTCTGCAGTTCAGAAGAAATTGAAGCCTTGATCCCGTTTGAGAAAGGGGAACTTCTTAGTACCATACAAAGGAACGCTAGCAACTCAAATGTTCCCTTTTTTTTATTACGGAAATTGAAATTGCATTTTGGGGGGAAACATCTTCGGATGACTAAAATCCATCGTATGTCATAG

Protein Analysis

420

Amino Acids

47.63

Weight (kDa)

9.24

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L26 PF16906 47 - 125 1.5e-15 Ribosomal proteins L26 eukaryotic, L24P archaeal
KOW PF00467 55 - 86 2.3e-07 KOW motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020355)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
Acc16I TGCGCA 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 410
AccBSI CCGCTC 1 cut(s) 259
AccII CGCG 2 cut(s) 207, 387
AclWI GGATC 3 cut(s) 269, 998, 1111
AcsI RAATTY 2 cut(s) 487, 1085
AcuI CTGAAG 1 cut(s) 847
AfaI GTAC 2 cut(s) 230, 1147
AfiI CCNNNNNNNGG 7 cut(s) 241, 274, 316, 346, 586, 901, 1155
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 3 cut(s) 806, 1109, 1204
AhdI GACNNNNNGTC 1 cut(s) 355
AjiI CACGTC 1 cut(s) 952
AjnI CCWGG 2 cut(s) 177, 222
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AluBI AGCT 4 cut(s) 334, 625, 760, 935
AluI AGCT 4 cut(s) 334, 625, 760, 935
Alw26I GTCTC 1 cut(s) 363
AlwI GGATC 3 cut(s) 269, 998, 1111
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 3 cut(s) 202, 375, 382
ApeKI GCWGC 4 cut(s) 607, 622, 760, 857
ApoI RAATTY 2 cut(s) 487, 1085
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 2 cut(s) 162, 389
AspS9I GGNCC 8 cut(s) 175, 192, 202, 285, 349, 367, 382, 474
AsuHPI GGTGA 5 cut(s) 256, 289, 319, 412, 1082
AsuNHI GCTAGC 1 cut(s) 1163
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 6 cut(s) 175, 192, 285, 349, 367, 474
BaeGI GKGCMC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 410
BarI GAAGNNNNNNTAC 2 cut(s) 611, 643
BbvI GCAGC 4 cut(s) 594, 634, 747, 844
BccI CCATC 3 cut(s) 904, 967, 1254
BcgI CGANNNNNNTGC 4 cut(s) 139, 173, 562, 596
BciT130I CCWGG 2 cut(s) 179, 224
BcoDI GTCTC 1 cut(s) 363
BfaI CTAG 6 cut(s) 62, 503, 659, 875, 932, 1164
BfmI CTRYAG 2 cut(s) 723, 1090
BglI GCCNNNNNGGC 1 cut(s) 210
BisI GCNGC 8 cut(s) 205, 385, 390, 393, 608, 623, 761, 858
BlpI GCTNAGC 1 cut(s) 936
BlsI GCNGC 8 cut(s) 206, 386, 391, 394, 609, 624, 762, 859
Bme1390I CCNGG 2 cut(s) 179, 224
Bme18I GGWCC 6 cut(s) 175, 192, 285, 349, 367, 474
BmeRI GACNNNNNGTC 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 267
BmgBI CACGTC 1 cut(s) 952
BmgT120I GGNCC 8 cut(s) 175, 192, 202, 285, 349, 367, 382, 474
BmiI GGNNCC 3 cut(s) 193, 286, 412
BmrFI CCNGG 2 cut(s) 179, 224
BmsI GCATC 2 cut(s) 141, 312
BmtI GCTAGC 1 cut(s) 1167
BoxI GACNNNNGTC 1 cut(s) 836
BplI GAGNNNNNCTC 2 cut(s) 669, 701
BpmI CTGGAG 2 cut(s) 120, 482
Bpu1102I GCTNAGC 1 cut(s) 936
Bsa29I ATCGAT 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 315, 378
Bsc4I CCNNNNNNNGG 7 cut(s) 241, 274, 316, 346, 586, 901, 1155
Bse118I RCCGGY 1 cut(s) 154
BseBI CCWGG 2 cut(s) 179, 224
BseCI ATCGAT 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 315, 378
BseGI GGATG 4 cut(s) 246, 925, 1020, 1239
BseLI CCNNNNNNNGG 7 cut(s) 241, 274, 316, 346, 586, 901, 1155
BseMII CTCAG 2 cut(s) 927, 1055
BseRI GAGGAG 3 cut(s) 118, 123, 893
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 4 cut(s) 594, 634, 747, 844
BsgI GTGCAG 1 cut(s) 790
Bsh1236I CGCG 2 cut(s) 207, 387
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 3 cut(s) 204, 377, 384
BshNI GGYRCC 1 cut(s) 410
BshVI ATCGAT 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 2 cut(s) 155, 235
BslFI GGGAC 2 cut(s) 205, 877
BslI CCNNNNNNNGG 7 cut(s) 241, 274, 316, 346, 586, 901, 1155
BsmAI GTCTC 1 cut(s) 363
BsmFI GGGAC 2 cut(s) 205, 877
BsnI GGCC 3 cut(s) 204, 377, 384
BsoBI CYCGRG 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 413
Bsp143I GATC 4 cut(s) 146, 261, 1003, 1116
Bsp1720I GCTNAGC 1 cut(s) 936
BspANI GGCC 3 cut(s) 204, 377, 384
BspCNI CTCAG 2 cut(s) 928, 1056
BspDI ATCGAT 1 cut(s) 149
BspFNI CGCG 2 cut(s) 207, 387
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 3 cut(s) 193, 286, 412
BspMAI CTGCAG 1 cut(s) 1094
BspOI GCTAGC 1 cut(s) 1167
BspPI GGATC 3 cut(s) 269, 998, 1111
BspT107I GGYRCC 1 cut(s) 410
BsrBI CCGCTC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 315, 378
BssMI GATC 4 cut(s) 146, 261, 1003, 1116
BssT1I CCWWGG 2 cut(s) 315, 378
Bst2UI CCWGG 2 cut(s) 179, 224
Bst4CI ACNGT 6 cut(s) 292, 697, 727, 768, 796, 810
Bst6I CTCTTC 1 cut(s) 1026
BstC8I GCNNGC 3 cut(s) 605, 740, 1165
BstDEI CTNAG 4 cut(s) 6, 936, 1064, 1142
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 4 cut(s) 246, 925, 1020, 1239
BstFNI CGCG 2 cut(s) 207, 387
BstHHI GCGC 2 cut(s) 162, 389
BstKTI GATC 4 cut(s) 149, 264, 1006, 1119
BstMAI GTCTC 1 cut(s) 363
BstMBI GATC 4 cut(s) 146, 261, 1003, 1116
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 3 cut(s) 210, 631, 866
BstNI CCWGG 2 cut(s) 179, 224
BstNSI RCATGY 1 cut(s) 911
BstPAI GACNNNNGTC 1 cut(s) 836
BstSCI CCNGG 2 cut(s) 177, 222
BstSFI CTRYAG 2 cut(s) 723, 1090
BstSLI GKGCMC 1 cut(s) 413
BstUI CGCG 2 cut(s) 207, 387
BstV1I GCAGC 4 cut(s) 594, 634, 747, 844
Bsu15I ATCGAT 1 cut(s) 149
BsuRI GGCC 3 cut(s) 204, 377, 384
BsuTUI ATCGAT 1 cut(s) 149
BtrI CACGTC 1 cut(s) 952
BtsCI GGATG 4 cut(s) 246, 925, 1020, 1239
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 2 cut(s) 573, 732
Cac8I GCNNGC 3 cut(s) 605, 740, 1165
CciI TCATGA 1 cut(s) 753
CfoI GCGC 2 cut(s) 162, 389
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 8 cut(s) 175, 192, 202, 285, 349, 367, 382, 474
ClaI ATCGAT 1 cut(s) 149
Csp6I GTAC 2 cut(s) 229, 1146
CspCI CAANNNNNGTGG 2 cut(s) 708, 743
CviAII CATG 4 cut(s) 436, 616, 754, 908
CviQI GTAC 2 cut(s) 229, 1146
DdeI CTNAG 4 cut(s) 6, 936, 1064, 1142
DpnI GATC 4 cut(s) 148, 263, 1005, 1118
DpnII GATC 4 cut(s) 146, 261, 1003, 1116
DrdI GACNNNNNNGTC 1 cut(s) 173
DriI GACNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 1026
Eam1105I GACNNNNNGTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 1026
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 2 cut(s) 315, 378
Eco32I GATATC 3 cut(s) 433, 885, 919
Eco47I GGWCC 6 cut(s) 175, 192, 285, 349, 367, 474
Eco57I CTGAAG 1 cut(s) 847
Eco88I CYCGRG 1 cut(s) 267
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 1085
EcoRII CCWGG 2 cut(s) 177, 222
EcoRV GATATC 3 cut(s) 433, 885, 919
EcoT14I CCWWGG 2 cut(s) 315, 378
ErhI CCWWGG 2 cut(s) 315, 378
FaeI CATG 4 cut(s) 439, 619, 757, 911
FalI AAGNNNNNCTT 2 cut(s) 1122, 1154
FaqI GGGAC 2 cut(s) 205, 877
FatI CATG 4 cut(s) 435, 615, 753, 907
FauI CCCGC 1 cut(s) 596
Fnu4HI GCNGC 8 cut(s) 205, 385, 390, 393, 608, 623, 761, 858
FokI GGATG 4 cut(s) 233, 912, 1027, 1246
Fsp4HI GCNGC 8 cut(s) 205, 385, 390, 393, 608, 623, 761, 858
FspBI CTAG 6 cut(s) 62, 503, 659, 875, 932, 1164
FspI TGCGCA 1 cut(s) 161
GlaI GCGC 2 cut(s) 161, 388
GluI GCNGC 8 cut(s) 205, 385, 390, 393, 608, 623, 761, 858
GsuI CTGGAG 2 cut(s) 120, 482
HaeIII GGCC 3 cut(s) 204, 377, 384
HapII CCGG 2 cut(s) 155, 235
HhaI GCGC 2 cut(s) 162, 389
Hin1II CATG 4 cut(s) 439, 619, 757, 911
Hin6I GCGC 2 cut(s) 160, 387
HinP1I GCGC 2 cut(s) 160, 387
HinfI GANTC 1 cut(s) 890
HpaII CCGG 2 cut(s) 155, 235
HphI GGTGA 5 cut(s) 256, 289, 319, 412, 1082
Hpy166II GTNNAC 4 cut(s) 229, 280, 288, 420
Hpy188I TCNGA 8 cut(s) 7, 146, 711, 866, 889, 1065, 1099, 1233
Hpy188III TCNNGA 6 cut(s) 137, 461, 587, 659, 754, 1007
Hpy8I GTNNAC 4 cut(s) 229, 280, 288, 420
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 3 cut(s) 110, 268, 871
HpyCH4III ACNGT 6 cut(s) 292, 697, 727, 768, 796, 810
HpyCH4IV ACGT 2 cut(s) 514, 951
HpyF10VI GCNNNNNNNGC 3 cut(s) 210, 631, 866
HpyF3I CTNAG 4 cut(s) 6, 936, 1064, 1142
HpySE526I ACGT 2 cut(s) 514, 951
Hsp92II CATG 4 cut(s) 439, 619, 757, 911
HspAI GCGC 2 cut(s) 160, 387
Kzo9I GATC 4 cut(s) 146, 261, 1003, 1116
LmnI GCTCC 2 cut(s) 339, 463
Lsp1109I GCAGC 4 cut(s) 594, 634, 747, 844
LweI GCATC 2 cut(s) 141, 312
MaeI CTAG 6 cut(s) 62, 503, 659, 875, 932, 1164
MaeII ACGT 2 cut(s) 514, 951
MaeIII GTNAC 1 cut(s) 714
MalI GATC 4 cut(s) 148, 263, 1005, 1118
MbiI CCGCTC 1 cut(s) 259
MboI GATC 4 cut(s) 146, 261, 1003, 1116
MboII GAAGA 5 cut(s) 674, 677, 1043, 1112, 1220
MhlI GDGCHC 1 cut(s) 413
MlyI GAGTC 1 cut(s) 899
MmeI TCCRAC 2 cut(s) 487, 1002
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 7 cut(s) 18, 35, 48, 56, 596, 653, 776
MspA1I CMGCKG 2 cut(s) 395, 603
MspI CCGG 2 cut(s) 155, 235
MspR9I CCNGG 2 cut(s) 179, 224
MvaI CCWGG 2 cut(s) 179, 224
MvnI CGCG 2 cut(s) 207, 387
MwoI GCNNNNNNNGC 3 cut(s) 210, 631, 866
NdeII GATC 4 cut(s) 146, 261, 1003, 1116
NheI GCTAGC 1 cut(s) 1163
NlaIII CATG 4 cut(s) 439, 619, 757, 911
NlaIV GGNNCC 3 cut(s) 193, 286, 412
NsbI TGCGCA 1 cut(s) 161
NspI RCATGY 1 cut(s) 911
PagI TCATGA 1 cut(s) 753
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 678
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 8 cut(s) 206, 386, 391, 394, 609, 624, 762, 859
Ple19I CGATCG 1 cut(s) 149
PleI GAGTC 1 cut(s) 898
PpsI GAGTC 1 cut(s) 898
PpuMI RGGWCCY 1 cut(s) 192
PshAI GACNNNNGTC 1 cut(s) 836
Psp5II RGGWCCY 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 177, 222
PspGI CCWGG 2 cut(s) 177, 222
PspN4I GGNNCC 3 cut(s) 193, 286, 412
PspPI GGNCC 8 cut(s) 175, 192, 202, 285, 349, 367, 382, 474
PspPPI RGGWCCY 1 cut(s) 192
PstI CTGCAG 1 cut(s) 1094
PsyI GACNNNGTC 1 cut(s) 173
PvuI CGATCG 1 cut(s) 149
RsaI GTAC 2 cut(s) 230, 1147
RsaNI GTAC 2 cut(s) 229, 1146
SaqAI TTAA 7 cut(s) 18, 35, 48, 56, 596, 653, 776
SatI GCNGC 8 cut(s) 205, 385, 390, 393, 608, 623, 761, 858
Sau3AI GATC 4 cut(s) 146, 261, 1003, 1116
Sau96I GGNCC 8 cut(s) 175, 192, 202, 285, 349, 367, 382, 474
SchI GAGTC 1 cut(s) 899
ScrFI CCNGG 2 cut(s) 179, 224
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 2 cut(s) 141, 312
SfcI CTRYAG 2 cut(s) 723, 1090
SinI GGWCC 6 cut(s) 175, 192, 285, 349, 367, 474
SspMI CTAG 6 cut(s) 62, 503, 659, 875, 932, 1164
StyD4I CCNGG 2 cut(s) 177, 222
StyI CCWWGG 2 cut(s) 315, 378
TaaI ACNGT 6 cut(s) 292, 697, 727, 768, 796, 810
TaiI ACGT 2 cut(s) 517, 954
TaqI TCGA 4 cut(s) 149, 255, 342, 451
TauI GCSGC 4 cut(s) 207, 387, 392, 395
Tru1I TTAA 7 cut(s) 18, 35, 48, 56, 596, 653, 776
Tru9I TTAA 7 cut(s) 18, 35, 48, 56, 596, 653, 776
TscAI CASTG 2 cut(s) 580, 732
TseI GCWGC 4 cut(s) 607, 622, 760, 857
TspDTI ATGAA 7 cut(s) 83, 632, 694, 742, 770, 788, 1031
TspGWI ACGGA 1 cut(s) 1210
TspRI CASTG 2 cut(s) 580, 732
Tth111I GACNNNGTC 1 cut(s) 173
VpaK11BI GGWCC 6 cut(s) 175, 192, 285, 349, 367, 474
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 2 cut(s) 487, 1085
XbaI TCTAGA 1 cut(s) 658
XceI RCATGY 1 cut(s) 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 6 cut(s) 62, 503, 659, 875, 932, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.