Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013905

Physical Location & Seq

Genomic Coordinates Reverse (-)

5119522 .. 5122033

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1064300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGGTGCTTCTGCTAAATGGGTCAAGGCTCTGATCGGAATGAAAAAACCCGACAAGGACGACCCTGAGAAGGTGAGCAGGAAGAGCAAGAAGTGGAAGCTGTGGAGGAGTTCTTCAGGGGATTTGGGGTCTACTTGGAAGGGTTTCAAAGGTAATTACTGGGCGGGATCGGAGGGGTCGGATTCTCCGAGAGGGGCGGATGTTTATAATGCTGCGGTGGCTGCGGTGGTTCGAGCTCCGCCGAAGGATTTCAGGGTTGTGAGGCAGGAATGGGCTGCTATCAGAATCCAAACTGCTTTCCGAGGCTTCTTGGCGAGAAGGGCTTTGAAGGCCTTGAGAGGAATAGTGAGGCTGCAAGCTCTGGTTCGGGGCCGGCAAGTGAGGAAGCAGGCTGCCGTGACACTGAGGTGCATGCAAGCTCTTGTTCGAGTTCAGGCTCGTGTGAGAGCTCGTCGCGTGCGAATGTCCATGGAGGGACAAGCTGTGCAGAACATGATCAATGAACGTCGCACGCAGGCCGATCTCTTAAAAGAAGCTGAGGAAGGGTGGTGTGATAGCAAGGGAACAATAGATGATGTTAAAGCAAAGATTCAAATGAGGCAAGAAGGAGCATTCAAGAGGGAGAGAGCAATTGCTTATGCTCTTGCTCAGAAGCAATGGAAATCAACCCCAGATTCAAATTCGAATTCTCGTACCAGATCCTCAGTGTACTCTCTCAGTAAGAACAATGAATTTGACAAGAACAGTTGGGGATGGAGTTGGTTAGAGCGTTGGATGTCAGCGAAGCCGTGGGAGACTAGGCTGATGGAAGAGTCGCACAATGACTCTTCTGAGATCACACCGCCTCCAAAGAGCTGTGCAGACCCTTTCGTGGGCAAACAACATTCGAAATCTTCAGAACCATGCTCGGTTAAAGTCAGGAGGAACAACGTCACCACTAGGATTTCTGCAAAGCCTCCTCACATTGGGCAAGCTACTCGCTCATCTTCGAGCCCAAGTTCCGAATTCCGGTATGATGAGAGCTCTGCTTCATCTTCACTGTGCACATCCACGCCGCCAGTTTCTGGGAACACCGGTTTGGCATCAGATAGAACAGATGACGGCTGCAACTATAAGCCGAGTTACATGAACCTGACTCAGTCAACTAAGTTGAAGCAGAAACCACACAGTTATCTGTCTCAAAGAACTCAAAGGCAATCCATGGACGAGTTTCAATTCCTCAAGAGGTCTGGGGCATTCTCTAATGGGGATTCAAAAAGTAGTGCTGGTTCTGAGCCATTTTCAGCCAACTTCTCCAAGCCGCTTGCCATGCCAACGCGGTTGGATAAGAACTCTATGAAACTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

450

Amino Acids

50.38

Weight (kDa)

10.27

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26180
fragaria_vesca	FvH4_2g31650
malus_domestica	MD08G1064300.v1.1 MD15G1057400.v1.1
prunus_persica	Prupe.1G409900_v2.0.a1
pyrus_communis	pycom08g05280
rosa_chinensis	RchiOBHm_Chr6g0311171
rosa_laevigata	RLG00000010430
rosa_multiflora	Rmu_sc0008967.1_g000015 Rmu_sc0016962.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157940
rosa_rugosa	Rorug06G0386000
rosa_samantha	Rh6AG500100 Rh6BG510800 Rh6CG516500 Rh6DG503000
rosa_wichuraiana	Rw6G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	1064
AccI	GTMKAC	1 cut(s)	131
AccII	CGCG	2 cut(s)	456, 1318
AciI	CCGC	9 cut(s)	164, 197, 215, 224, 239, 842, 1055, 1301, 1318
AclWI	GGATC	2 cut(s)	175, 693
AcsI	RAATTY	4 cut(s)	679, 685, 731, 1004
AcuI	CTGAAG	2 cut(s)	99, 879
AfaI	GTAC	2 cut(s)	694, 710
AfiI	CCNNNNNNNGG	6 cut(s)	70, 871, 872, 965, 1008, 1064
AgeI	ACCGGT	1 cut(s)	1073
AgsI	TTSAA	8 cut(s)	148, 328, 593, 616, 678, 1153, 1214, 1254
AjuI	GAANNNNNNNTTGG	2 cut(s)	1061, 1093
AleI	CACNNNNGTG	1 cut(s)	406
Alw21I	GWGCWC	4 cut(s)	238, 451, 1025, 1046
Alw26I	GTCTC	2 cut(s)	788, 1182
Alw44I	GTGCAC	1 cut(s)	1042
AlwI	GGATC	2 cut(s)	175, 693
AlwNI	CAGNNNCTG	1 cut(s)	1064
AoxI	GGCC	3 cut(s)	330, 370, 516
ApaLI	GTGCAC	1 cut(s)	1042
ApeKI	GCWGC	6 cut(s)	212, 221, 275, 352, 392, 1104
ApoI	RAATTY	4 cut(s)	679, 685, 731, 1004
AsiGI	ACCGGT	1 cut(s)	1073
Asp700I	GAANNNNTTC	2 cut(s)	143, 248
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	2 cut(s)	85, 925
AsuII	TTCGAA	2 cut(s)	683, 887
BaeGI	GKGCMC	1 cut(s)	1046
BanII	GRGCYC	4 cut(s)	238, 451, 995, 1025
BauI	CACGAG	1 cut(s)	438
Bbv12I	GWGCWC	4 cut(s)	238, 451, 1025, 1046
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	6 cut(s)	199, 208, 262, 339, 379, 1091
BccI	CCATC	2 cut(s)	747, 799
BceAI	ACGGC	3 cut(s)	380, 772, 1117
BcgI	CGANNNNNNTGC	2 cut(s)	959, 993
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	2 cut(s)	788, 1182
BfaI	CTAG	2 cut(s)	798, 939
BisI	GCNGC	8 cut(s)	213, 222, 276, 353, 393, 1055, 1105, 1301
BlsI	GCNGC	8 cut(s)	214, 223, 277, 354, 394, 1056, 1106, 1302
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	1091
BmuI	ACTGGG	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu14I	TTCGAA	2 cut(s)	683, 887
BpuEI	CTTGAG	2 cut(s)	355, 1205
BsaJI	CCNNGG	4 cut(s)	301, 468, 788, 1200
BsaWI	WCCGGW	2 cut(s)	1008, 1073
BsaXI	ACNNNNNCTCC	2 cut(s)	829, 859
Bsc4I	CCNNNNNNNGG	6 cut(s)	70, 871, 872, 965, 1008, 1064
Bse118I	RCCGGY	2 cut(s)	372, 1073
Bse1I	ACTGG	2 cut(s)	164, 1058
Bse3DI	GCAATG	1 cut(s)	662
BseDI	CCNNGG	4 cut(s)	301, 468, 788, 1200
BseGI	GGATG	4 cut(s)	205, 758, 780, 1046
BseLI	CCNNNNNNNGG	6 cut(s)	70, 871, 872, 965, 1008, 1064
BseMI	GCAATG	1 cut(s)	662
BseNI	ACTGG	2 cut(s)	164, 1058
BseRI	GAGGAG	2 cut(s)	121, 948
BseSI	GKGCMC	1 cut(s)	1046
BseXI	GCAGC	6 cut(s)	199, 208, 262, 339, 379, 1091
BsgI	GTGCAG	2 cut(s)	506, 879
Bsh1236I	CGCG	2 cut(s)	456, 1318
BshFI	GGCC	3 cut(s)	332, 372, 518
BshTI	ACCGGT	1 cut(s)	1073
BsiHKAI	GWGCWC	4 cut(s)	238, 451, 1025, 1046
BsiSI	CCGG	3 cut(s)	373, 1009, 1074
BslFI	GGGAC	1 cut(s)	489
BslI	CCNNNNNNNGG	6 cut(s)	70, 871, 872, 965, 1008, 1064
BsmAI	GTCTC	2 cut(s)	788, 1182
BsmFI	GGGAC	1 cut(s)	489
BsmI	GAATGC	2 cut(s)	611, 1235
BsnI	GGCC	3 cut(s)	332, 372, 518
Bsp119I	TTCGAA	2 cut(s)	683, 887
Bsp1286I	GDGCHC	5 cut(s)	238, 451, 995, 1025, 1046
Bsp143I	GATC	6 cut(s)	33, 167, 495, 520, 698, 834
Bsp19I	CCATGG	2 cut(s)	468, 1200
BspACI	CCGC	9 cut(s)	164, 197, 215, 224, 239, 842, 1055, 1301, 1318
BspANI	GGCC	3 cut(s)	332, 372, 518
BspFNI	CGCG	2 cut(s)	456, 1318
BspLI	GGNNCC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	175, 693
BspQI	GCTCTTC	1 cut(s)	77
BspT104I	TTCGAA	2 cut(s)	683, 887
BsrDI	GCAATG	1 cut(s)	662
BsrFI	RCCGGY	2 cut(s)	372, 1073
BsrI	ACTGG	2 cut(s)	164, 1058
BssAI	RCCGGY	2 cut(s)	372, 1073
BssECI	CCNNGG	4 cut(s)	301, 468, 788, 1200
BssMI	GATC	6 cut(s)	33, 167, 495, 520, 698, 834
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	2 cut(s)	468, 1200
Bst2BI	CACGAG	1 cut(s)	438
Bst4CI	ACNGT	3 cut(s)	746, 1041, 1169
Bst6I	CTCTTC	3 cut(s)	77, 804, 832
BstBI	TTCGAA	2 cut(s)	683, 887
BstDSI	CCRYGG	3 cut(s)	468, 788, 1200
BstF5I	GGATG	4 cut(s)	205, 758, 780, 1046
BstFNI	CGCG	2 cut(s)	456, 1318
BstKTI	GATC	6 cut(s)	36, 170, 498, 523, 701, 837
BstMAI	GTCTC	2 cut(s)	788, 1182
BstMBI	GATC	6 cut(s)	33, 167, 495, 520, 698, 834
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 218, 221, 320, 329, 1309
BstNSI	RCATGY	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	1046
BstUI	CGCG	2 cut(s)	456, 1318
BstV1I	GCAGC	6 cut(s)	199, 208, 262, 339, 379, 1091
BstX2I	RGATCY	1 cut(s)	698
BstYI	RGATCY	1 cut(s)	698
BsuRI	GGCC	3 cut(s)	332, 372, 518
BtgI	CCRYGG	3 cut(s)	468, 788, 1200
BtsCI	GGATG	4 cut(s)	205, 758, 780, 1046
BtsIMutI	CAGTG	3 cut(s)	401, 711, 1037
CaiI	CAGNNNCTG	1 cut(s)	1064
Cfr10I	RCCGGY	2 cut(s)	372, 1073
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	2 cut(s)	693, 709
CspAI	ACCGGT	1 cut(s)	1073
CviAII	CATG	7 cut(s)	412, 469, 493, 903, 1126, 1201, 1309
CviQI	GTAC	2 cut(s)	693, 709
DpnI	GATC	6 cut(s)	35, 169, 497, 522, 700, 836
DpnII	GATC	6 cut(s)	33, 167, 495, 520, 698, 834
Eam1104I	CTCTTC	3 cut(s)	77, 804, 832
EarI	CTCTTC	3 cut(s)	77, 804, 832
EciI	GGCGGA	2 cut(s)	212, 228
Ecl136II	GAGCTC	3 cut(s)	236, 449, 1023
Eco130I	CCWWGG	2 cut(s)	468, 1200
Eco147I	AGGCCT	1 cut(s)	332
Eco24I	GRGCYC	4 cut(s)	238, 451, 995, 1025
Eco53kI	GAGCTC	3 cut(s)	236, 449, 1023
Eco57I	CTGAAG	2 cut(s)	99, 879
EcoICRI	GAGCTC	3 cut(s)	236, 449, 1023
EcoRI	GAATTC	2 cut(s)	685, 1004
EcoT14I	CCWWGG	2 cut(s)	468, 1200
EcoT38I	GRGCYC	4 cut(s)	238, 451, 995, 1025
ErhI	CCWWGG	2 cut(s)	468, 1200
FaeI	CATG	7 cut(s)	415, 472, 496, 906, 1129, 1204, 1312
FaqI	GGGAC	1 cut(s)	489
FatI	CATG	7 cut(s)	411, 468, 492, 902, 1125, 1200, 1308
FauI	CCCGC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	8 cut(s)	213, 222, 276, 353, 393, 1055, 1105, 1301
FokI	GGATG	4 cut(s)	212, 765, 787, 1033
FriOI	GRGCYC	4 cut(s)	238, 451, 995, 1025
Fsp4HI	GCNGC	8 cut(s)	213, 222, 276, 353, 393, 1055, 1105, 1301
FspBI	CTAG	2 cut(s)	798, 939
GluI	GCNGC	8 cut(s)	213, 222, 276, 353, 393, 1055, 1105, 1301
HaeIII	GGCC	3 cut(s)	332, 372, 518
HapII	CCGG	3 cut(s)	373, 1009, 1074
Hin1II	CATG	7 cut(s)	415, 472, 496, 906, 1129, 1204, 1312
HincII	GTYRAC	1 cut(s)	1143
HindII	GTYRAC	1 cut(s)	1143
HinfI	GANTC	8 cut(s)	182, 285, 589, 674, 812, 824, 1135, 1250
HpaII	CCGG	3 cut(s)	373, 1009, 1074
HphI	GGTGA	2 cut(s)	85, 925
Hpy166II	GTNNAC	4 cut(s)	132, 709, 1044, 1143
Hpy188III	TCNNGA	3 cut(s)	616, 919, 1222
Hpy8I	GTNNAC	4 cut(s)	132, 709, 1044, 1143
Hpy99I	CGWCG	2 cut(s)	456, 510
HpyAV	CCTTC	7 cut(s)	64, 133, 238, 312, 322, 536, 599
HpyCH4III	ACNGT	3 cut(s)	746, 1041, 1169
HpyCH4IV	ACGT	2 cut(s)	505, 930
HpyCH4V	TGCA	8 cut(s)	355, 411, 415, 487, 860, 950, 1044, 1107
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 218, 221, 320, 329, 1309
HpySE526I	ACGT	2 cut(s)	505, 930
Hsp92II	CATG	7 cut(s)	415, 472, 496, 906, 1129, 1204, 1312
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	6 cut(s)	33, 167, 495, 520, 698, 834
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	2 cut(s)	241, 608
Lsp1109I	GCAGC	6 cut(s)	199, 208, 262, 339, 379, 1091
LweI	GCATC	1 cut(s)	1091
MaeI	CTAG	2 cut(s)	798, 939
MaeII	ACGT	2 cut(s)	505, 930
MaeIII	GTNAC	3 cut(s)	397, 931, 1121
MalI	GATC	6 cut(s)	35, 169, 497, 522, 700, 836
MboI	GATC	6 cut(s)	33, 167, 495, 520, 698, 834
MboII	GAAGA	7 cut(s)	94, 105, 819, 821, 885, 978, 1026
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	1 cut(s)	698
MhlI	GDGCHC	5 cut(s)	238, 451, 995, 1025, 1046
MluCI	AATT	7 cut(s)	154, 630, 679, 685, 731, 1004, 1214
MlyI	GAGTC	3 cut(s)	818, 821, 1129
MmeI	TCCRAC	3 cut(s)	159, 752, 1302
MroNI	GCCGGC	1 cut(s)	372
MroXI	GAANNNNTTC	2 cut(s)	143, 248
MseI	TTAA	3 cut(s)	527, 579, 912
MslI	CAYNNNNRTG	1 cut(s)	406
MspI	CCGG	3 cut(s)	373, 1009, 1074
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	2 cut(s)	611, 1235
MvnI	CGCG	2 cut(s)	456, 1318
MwoI	GCNNNNNNNGC	6 cut(s)	84, 218, 221, 320, 329, 1309
NaeI	GCCGGC	1 cut(s)	374
NcoI	CCATGG	2 cut(s)	468, 1200
NdeII	GATC	6 cut(s)	33, 167, 495, 520, 698, 834
NgoMIV	GCCGGC	1 cut(s)	372
NlaIII	CATG	7 cut(s)	415, 472, 496, 906, 1129, 1204, 1312
NlaIV	GGNNCC	1 cut(s)	371
NmeAIII	GCCGAG	1 cut(s)	1143
NmuCI	GTSAC	2 cut(s)	397, 931
NspI	RCATGY	1 cut(s)	415
NspV	TTCGAA	2 cut(s)	683, 887
OliI	CACNNNNGTG	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	415
PceI	AGGCCT	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	2 cut(s)	185, 457
PctI	GAATGC	2 cut(s)	611, 1235
PdiI	GCCGGC	1 cut(s)	374
PdmI	GAANNNNTTC	2 cut(s)	143, 248
PfeI	GAWTC	5 cut(s)	182, 285, 589, 674, 1250
PflFI	GACNNNGTC	1 cut(s)	1138
PflMI	CCANNNNNTGG	1 cut(s)	1064
PinAI	ACCGGT	1 cut(s)	1073
PkrI	GCNGC	8 cut(s)	214, 223, 277, 354, 394, 1056, 1106, 1302
PleI	GAGTC	3 cut(s)	818, 820, 1129
PpsI	GAGTC	3 cut(s)	818, 820, 1129
PsiI	TTATAA	1 cut(s)	207
Psp124BI	GAGCTC	3 cut(s)	238, 451, 1025
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	1 cut(s)	370
PsrI	GAACNNNNNNTAC	2 cut(s)	1252, 1284
PstNI	CAGNNNCTG	1 cut(s)	1064
PsuI	RGATCY	1 cut(s)	698
PsyI	GACNNNGTC	1 cut(s)	1138
RsaI	GTAC	2 cut(s)	694, 710
RsaNI	GTAC	2 cut(s)	693, 709
RseI	CAYNNNNRTG	1 cut(s)	406
SacI	GAGCTC	3 cut(s)	238, 451, 1025
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	527, 579, 912
SatI	GCNGC	8 cut(s)	213, 222, 276, 353, 393, 1055, 1105, 1301
Sau3AI	GATC	6 cut(s)	33, 167, 495, 520, 698, 834
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	3 cut(s)	818, 821, 1129
SduI	GDGCHC	5 cut(s)	238, 451, 995, 1025, 1046
SfaNI	GCATC	1 cut(s)	1091
SfuI	TTCGAA	2 cut(s)	683, 887
SmiMI	CAYNNNNRTG	1 cut(s)	406
SmlI	CTYRAG	2 cut(s)	334, 1220
SmoI	CTYRAG	2 cut(s)	334, 1220
SphI	GCATGC	1 cut(s)	415
Sse9I	AATT	7 cut(s)	154, 630, 679, 685, 731, 1004, 1214
SseBI	AGGCCT	1 cut(s)	332
SsiI	CCGC	9 cut(s)	164, 197, 215, 224, 239, 842, 1055, 1301, 1318
SspMI	CTAG	2 cut(s)	798, 939
SstI	GAGCTC	3 cut(s)	238, 451, 1025
StuI	AGGCCT	1 cut(s)	332
StyI	CCWWGG	2 cut(s)	468, 1200
TaaI	ACNGT	3 cut(s)	746, 1041, 1169
TaiI	ACGT	2 cut(s)	508, 933
TaqI	TCGA	5 cut(s)	232, 427, 683, 887, 989
TasI	AATT	7 cut(s)	154, 630, 679, 685, 731, 1004, 1214
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	2 cut(s)	1057, 1303
TfiI	GAWTC	5 cut(s)	182, 285, 589, 674, 1250
Tru1I	TTAA	3 cut(s)	527, 579, 912
Tru9I	TTAA	3 cut(s)	527, 579, 912
TscAI	CASTG	3 cut(s)	408, 711, 1044
TseFI	GTSAC	2 cut(s)	397, 931
TseI	GCWGC	6 cut(s)	212, 221, 275, 352, 392, 1104
Tsp45I	GTSAC	2 cut(s)	397, 931
TspDTI	ATGAA	5 cut(s)	56, 516, 744, 1020, 1142
TspRI	CASTG	3 cut(s)	408, 711, 1044
Tth111I	GACNNNGTC	1 cut(s)	1138
Van91I	CCANNNNNTGG	1 cut(s)	1064
VneI	GTGCAC	1 cut(s)	1042
XapI	RAATTY	4 cut(s)	679, 685, 731, 1004
XceI	RCATGY	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	131
XmnI	GAANNNNTTC	2 cut(s)	143, 248
XspI	CTAG	2 cut(s)	798, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.