Rroxscaffold_7G00157940

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013905
Physical Location & Seq
Forward (+)
1595216 .. 1597372
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157940.1

Sequence Viewer

Length: 1347 bp
ATGGGTGCTTCAGGAAAATGGGTGAAATCCCTTATAGGTTTCAAAAAACCCGACAAAGATGATCAAGAAAAGTTGGGTGGGAAGAACAAGAAATGGAAGCTATGGAGGAATTCGTCAGGGGATTTTGGTTCTTCTTGGAAAGGATTCAAAGGGAATCACAGAGCTGCTTCTGAAGGGTCTGATTCACCGAGAAGGGCTGAAGCCTACACTGCTGCAGTGGCTACAGTGGTTCGATCTCACCCTAGAGATTTCAGAGTTGTCAGGCAAGAATGGGCCGCTATCAGAATCCAAACCGCTTTCCGAGGCTTCCTGGCAAGAAGGGCTTTGAAGGCGTTGAGAGGAATTGTGAGGCTTCAAGCTCTGGTTAGGGGAAGACAAGTGAGGAAGCAAGCGGCTGTAACACTCAGATGCATGCAAGCCCTTGTTCGAGTTCAGGCACGTGTGAGGGCTCGCCGCGTGCGAATGTCCATTGAAGGCCAAGCTGTGCAGAACATGCTCAATGAGCGCCGCACCCAAGCTGATATCTTAAAAGAAGCTGAGGAAGGGTGGTGTGATAGCAAGGGAACAATAGATGATGTTAAAGCAAAGATTCAAATGAGGCAAGAAGGTGCCTTCAAAAGGGAGAGAGCGATTGCGTACTCTCTTGCTCAGAAGCAATGGAGATCAACCCCAGATTCGAATTCACGCATCAATTCCTCAGTGTACTCTCTCAATAAGAACAACGAATTCGACAAGAATAGCTGGGGATGGAGTTGGCTAGAGCGTTGGATGTCAGCTAAGCCATGGGAGACTAGGTTGATGGAACAATCCTACAGTGACCCATCTGAGATCACACCTCTTCCAAAGAAATGTTCAGACCCTTTTGTTGGCATTGGCAAACATTCGAAATCTTCAGAGCCACCATGCTTAGTCAAAGTGAGAAGGAACAATGTTACTACTAGGATTTCTGCTAAGCCTCCCCACATTGGGCAAGTGACTACTCGCTCATCTTCAAGCCCGAGTTCAGAATTTCAGTACGATGACAGCCCTGGCTCATCTTCACTTACATCAACAACACCGGTTTCTGGAAACACCGGATTGGCTTCGGATAGAACAGATGAGAGCAGTAACTTTAGGCCAAGTTACATGAACCTGACCGAGTCAACTAAGGCAAAGCAGAAAGCAGCAAGTTATCAATCTCACAGAACAAGGCAATCCATGGATGAGTTTCAGTTTCTCAAGAGGTCTGGGGCTTTCTCTAATGGGGATTCCAAAAGTAGTGCTGGTTCTGAGCCTTCATCAGTCAACTTCTCAAAGCCGCTTGGCATGCCAACCCGCTTGGATAAGAACTCTTTGAAACCAAGGTGA

Protein Analysis

448

Amino Acids

50.31

Weight (kDa)

10.43

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26180
fragaria_vesca FvH4_2g31650
malus_domestica MD08G1064300.v1.1 MD15G1057400.v1.1
prunus_persica Prupe.1G409900_v2.0.a1
pyrus_communis pycom08g05280
rosa_chinensis RchiOBHm_Chr6g0311171
rosa_laevigata RLG00000010430
rosa_multiflora Rmu_sc0008967.1_g000015 Rmu_sc0016962.1_g000004
rosa_roxburghii Rroxscaffold_7G00157940
rosa_rugosa Rorug06G0386000
rosa_samantha Rh6AG500100 Rh6BG510800 Rh6CG516500 Rh6DG503000
rosa_wichuraiana Rw6G043560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 608
AccII CGCG 1 cut(s) 456
AciI CCGC 7 cut(s) 276, 294, 392, 454, 508, 1298, 1315
AcsI RAATTY 4 cut(s) 109, 679, 725, 1007
AcuI CTGAAG 3 cut(s) 192, 219, 876
AcvI CACGTG 1 cut(s) 440
AfaI GTAC 3 cut(s) 638, 704, 1016
AfiI CCNNNNNNNGG 5 cut(s) 618, 866, 965, 966, 1064
AflIII ACRYGT 1 cut(s) 439
AgeI ACCGGT 1 cut(s) 1057
AgsI TTSAA 9 cut(s) 43, 148, 328, 356, 473, 593, 616, 993, 1336
AjnI CCWGG 2 cut(s) 309, 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 835, 867
AluBI AGCT 8 cut(s) 100, 164, 359, 482, 518, 536, 741, 776
AluI AGCT 8 cut(s) 100, 164, 359, 482, 518, 536, 741, 776
Alw26I GTCTC 1 cut(s) 782
Ama87I CYCGRG 1 cut(s) 997
AoxI GGCC 3 cut(s) 273, 475, 1115
ApeKI GCWGC 3 cut(s) 164, 212, 1163
ApoI RAATTY 4 cut(s) 109, 679, 725, 1007
AsiGI ACCGGT 1 cut(s) 1057
Asp700I GAANNNNTTC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 273
AsuHPI GGTGA 3 cut(s) 34, 177, 230
AsuII TTCGAA 2 cut(s) 677, 884
AvaI CYCGRG 1 cut(s) 997
BanI GGYRCC 1 cut(s) 608
BanII GRGCYC 1 cut(s) 451
BbrPI CACGTG 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 3 cut(s) 151, 199, 1175
BccI CCATC 3 cut(s) 741, 793, 829
BciT130I CCWGG 2 cut(s) 311, 1029
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 782
BfaI CTAG 4 cut(s) 243, 758, 792, 939
BfmI CTRYAG 3 cut(s) 213, 222, 811
BfoI RGCGCY 1 cut(s) 508
BisI GCNGC 8 cut(s) 165, 213, 276, 393, 454, 508, 1164, 1298
BlpI GCTNAGC 2 cut(s) 777, 951
BlsI GCNGC 8 cut(s) 166, 214, 277, 394, 455, 509, 1165, 1299
Bme1390I CCNGG 2 cut(s) 311, 1029
BmeT110I CYCGRG 1 cut(s) 997
BmgT120I GGNCC 1 cut(s) 273
BmiI GGNNCC 1 cut(s) 610
BmrFI CCNGG 2 cut(s) 311, 1029
BmsI GCATC 2 cut(s) 398, 696
BpiI GAAGAC 1 cut(s) 379
Bpu10I CCTNAGC 1 cut(s) 537
Bpu1102I GCTNAGC 2 cut(s) 777, 951
Bpu14I TTCGAA 2 cut(s) 677, 884
BpuEI CTTGAG 1 cut(s) 1202
BsaAI YACGTR 1 cut(s) 440
BsaJI CCNNGG 5 cut(s) 301, 782, 1027, 1197, 1340
BsaWI WCCGGW 2 cut(s) 1057, 1073
BsaXI ACNNNNNCTCC 2 cut(s) 779, 809
Bsc4I CCNNNNNNNGG 5 cut(s) 618, 866, 965, 966, 1064
Bse118I RCCGGY 1 cut(s) 1057
Bse3DI GCAATG 1 cut(s) 662
BseBI CCWGG 2 cut(s) 311, 1029
BseDI CCNNGG 5 cut(s) 301, 782, 1027, 1197, 1340
BseGI GGATG 3 cut(s) 752, 774, 1207
BseLI CCNNNNNNNGG 5 cut(s) 618, 866, 965, 966, 1064
BseMI GCAATG 1 cut(s) 662
BseMII CTCAG 6 cut(s) 418, 528, 662, 711, 816, 1260
BseXI GCAGC 3 cut(s) 151, 199, 1175
BseYI CCCAGC 1 cut(s) 741
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 3 cut(s) 275, 477, 1117
BshNI GGYRCC 1 cut(s) 608
BshTI ACCGGT 1 cut(s) 1057
BsiHKCI CYCGRG 1 cut(s) 997
BsiSI CCGG 2 cut(s) 1058, 1074
BslI CCNNNNNNNGG 5 cut(s) 618, 866, 965, 966, 1064
BsmAI GTCTC 1 cut(s) 782
BsnI GGCC 3 cut(s) 275, 477, 1117
BsoBI CYCGRG 1 cut(s) 997
Bsp119I TTCGAA 2 cut(s) 677, 884
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 4 cut(s) 61, 233, 662, 828
Bsp1720I GCTNAGC 2 cut(s) 777, 951
Bsp19I CCATGG 2 cut(s) 782, 1197
BspACI CCGC 7 cut(s) 276, 294, 392, 454, 508, 1298, 1315
BspANI GGCC 3 cut(s) 275, 477, 1117
BspCNI CTCAG 6 cut(s) 417, 529, 661, 710, 817, 1261
BspFNI CGCG 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 610
BspMAI CTGCAG 1 cut(s) 217
BspT104I TTCGAA 2 cut(s) 677, 884
BspT107I GGYRCC 1 cut(s) 608
BsrDI GCAATG 1 cut(s) 662
BsrFI RCCGGY 1 cut(s) 1057
BssAI RCCGGY 1 cut(s) 1057
BssECI CCNNGG 5 cut(s) 301, 782, 1027, 1197, 1340
BssMI GATC 4 cut(s) 61, 233, 662, 828
BssT1I CCWWGG 3 cut(s) 782, 1197, 1340
Bst2UI CCWGG 2 cut(s) 311, 1029
Bst4CI ACNGT 2 cut(s) 226, 815
Bst6I CTCTTC 1 cut(s) 843
BstAPI GCANNNNNTGC 1 cut(s) 493
BstBAI YACGTR 1 cut(s) 440
BstBI TTCGAA 2 cut(s) 677, 884
BstC8I GCNNGC 6 cut(s) 390, 413, 417, 451, 458, 1307
BstDSI CCRYGG 2 cut(s) 782, 1197
BstENI CCTNNNNNAGG 1 cut(s) 616
BstF5I GGATG 3 cut(s) 752, 774, 1207
BstFNI CGCG 1 cut(s) 456
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 4 cut(s) 64, 236, 665, 831
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 4 cut(s) 61, 233, 662, 828
BstMWI GCNNNNNNNGC 7 cut(s) 209, 218, 320, 329, 493, 502, 1306
BstNI CCWGG 2 cut(s) 311, 1029
BstNSI RCATGY 3 cut(s) 415, 496, 1309
BstSCI CCNGG 2 cut(s) 309, 1027
BstSFI CTRYAG 3 cut(s) 213, 222, 811
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 3 cut(s) 151, 199, 1175
BstV2I GAAGAC 1 cut(s) 379
BsuRI GGCC 3 cut(s) 275, 477, 1117
BtgI CCRYGG 2 cut(s) 782, 1197
BtsCI GGATG 3 cut(s) 752, 774, 1207
BtsI GCAGTG 2 cut(s) 207, 222
BtsIMutI CAGTG 5 cut(s) 207, 222, 231, 705, 820
Cac8I GCNNGC 6 cut(s) 390, 413, 417, 451, 458, 1307
CfoI GCGC 1 cut(s) 507
Cfr10I RCCGGY 1 cut(s) 1057
Cfr13I GGNCC 1 cut(s) 273
Csp6I GTAC 3 cut(s) 637, 703, 1015
CspAI ACCGGT 1 cut(s) 1057
CviAII CATG 7 cut(s) 412, 493, 783, 903, 1126, 1198, 1306
CviQI GTAC 3 cut(s) 637, 703, 1015
DpnI GATC 4 cut(s) 63, 235, 664, 830
DpnII GATC 4 cut(s) 61, 233, 662, 828
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Eco130I CCWWGG 3 cut(s) 782, 1197, 1340
Eco24I GRGCYC 1 cut(s) 451
Eco32I GATATC 1 cut(s) 523
Eco57I CTGAAG 3 cut(s) 192, 219, 876
Eco72I CACGTG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 997
EcoNI CCTNNNNNAGG 1 cut(s) 616
EcoRI GAATTC 3 cut(s) 109, 679, 725
EcoRII CCWGG 2 cut(s) 309, 1027
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 3 cut(s) 782, 1197, 1340
EcoT22I ATGCAT 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 451
ErhI CCWWGG 3 cut(s) 782, 1197, 1340
FaeI CATG 7 cut(s) 415, 496, 786, 906, 1129, 1201, 1309
FaiI YATR 9 cut(s) 35, 103, 413, 494, 784, 904, 1127, 1199, 1307
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FatI CATG 7 cut(s) 411, 492, 782, 902, 1125, 1197, 1305
FauI CCCGC 1 cut(s) 1322
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 8 cut(s) 165, 213, 276, 393, 454, 508, 1164, 1298
FokI GGATG 3 cut(s) 759, 781, 1214
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 8 cut(s) 165, 213, 276, 393, 454, 508, 1164, 1298
FspBI CTAG 4 cut(s) 243, 758, 792, 939
GlaI GCGC 1 cut(s) 506
GluI GCNGC 8 cut(s) 165, 213, 276, 393, 454, 508, 1164, 1298
GsaI CCCAGC 1 cut(s) 745
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 3 cut(s) 275, 477, 1117
HapII CCGG 2 cut(s) 1058, 1074
HhaI GCGC 1 cut(s) 507
Hin1II CATG 7 cut(s) 415, 496, 786, 906, 1129, 1201, 1309
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HincII GTYRAC 2 cut(s) 1143, 1285
HindII GTYRAC 2 cut(s) 1143, 1285
HinfI GANTC 8 cut(s) 144, 154, 182, 285, 589, 674, 1139, 1247
HpaII CCGG 2 cut(s) 1058, 1074
HphI GGTGA 3 cut(s) 34, 177, 230
Hpy166II GTNNAC 3 cut(s) 703, 1143, 1285
Hpy188III TCNNGA 4 cut(s) 12, 65, 1065, 1219
Hpy8I GTNNAC 3 cut(s) 703, 1143, 1285
HpyCH4III ACNGT 2 cut(s) 226, 815
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 4 cut(s) 215, 411, 415, 487
HpyF10VI GCNNNNNNNGC 7 cut(s) 209, 218, 320, 329, 493, 502, 1306
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 7 cut(s) 415, 496, 786, 906, 1129, 1201, 1309
HspAI GCGC 1 cut(s) 505
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 4 cut(s) 61, 233, 662, 828
Lsp1109I GCAGC 3 cut(s) 151, 199, 1175
LweI GCATC 2 cut(s) 398, 696
MaeI CTAG 4 cut(s) 243, 758, 792, 939
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 6 cut(s) 397, 815, 931, 973, 1106, 1121
MalI GATC 4 cut(s) 63, 235, 664, 830
MboI GATC 4 cut(s) 61, 233, 662, 828
MboII GAAGA 7 cut(s) 94, 123, 384, 830, 882, 981, 1029
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 6 cut(s) 109, 342, 679, 691, 725, 1007
MlyI GAGTC 1 cut(s) 1148
MmeI TCCRAC 1 cut(s) 746
Mph1103I ATGCAT 1 cut(s) 413
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 2 cut(s) 527, 579
MslI CAYNNNNRTG 1 cut(s) 406
MspI CCGG 2 cut(s) 1058, 1074
MspR9I CCNGG 2 cut(s) 311, 1029
MvaI CCWGG 2 cut(s) 311, 1029
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 7 cut(s) 209, 218, 320, 329, 493, 502, 1306
NcoI CCATGG 2 cut(s) 782, 1197
NdeII GATC 4 cut(s) 61, 233, 662, 828
NlaIII CATG 7 cut(s) 415, 496, 786, 906, 1129, 1201, 1309
NlaIV GGNNCC 1 cut(s) 610
NmuCI GTSAC 2 cut(s) 815, 973
NsiI ATGCAT 1 cut(s) 413
NspI RCATGY 3 cut(s) 415, 496, 1309
NspV TTCGAA 2 cut(s) 677, 884
PaeI GCATGC 2 cut(s) 415, 1309
PcsI WCGNNNNNNNCGW 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 7 cut(s) 144, 154, 182, 285, 589, 674, 1247
PflFI GACNNNGTC 1 cut(s) 1138
PinAI ACCGGT 1 cut(s) 1057
PkrI GCNGC 8 cut(s) 166, 214, 277, 394, 455, 509, 1165, 1299
PleI GAGTC 1 cut(s) 1147
PmaCI CACGTG 1 cut(s) 440
PmlI CACGTG 1 cut(s) 440
PpsI GAGTC 1 cut(s) 1147
Ppu21I YACGTR 1 cut(s) 440
Psp6I CCWGG 2 cut(s) 309, 1027
PspCI CACGTG 1 cut(s) 440
PspFI CCCAGC 1 cut(s) 741
PspGI CCWGG 2 cut(s) 309, 1027
PspN4I GGNNCC 1 cut(s) 610
PspPI GGNCC 1 cut(s) 273
PsrI GAACNNNNNNTAC 2 cut(s) 1249, 1281
PstI CTGCAG 1 cut(s) 217
PsyI GACNNNGTC 1 cut(s) 1138
RsaI GTAC 3 cut(s) 638, 704, 1016
RsaNI GTAC 3 cut(s) 637, 703, 1015
RseI CAYNNNNRTG 1 cut(s) 406
SaqAI TTAA 2 cut(s) 527, 579
SatI GCNGC 8 cut(s) 165, 213, 276, 393, 454, 508, 1164, 1298
Sau3AI GATC 4 cut(s) 61, 233, 662, 828
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 1148
ScrFI CCNGG 2 cut(s) 311, 1029
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 2 cut(s) 398, 696
SfcI CTRYAG 3 cut(s) 213, 222, 811
SfuI TTCGAA 2 cut(s) 677, 884
SmiMI CAYNNNNRTG 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 1217
SmoI CTYRAG 1 cut(s) 1217
SphI GCATGC 2 cut(s) 415, 1309
Sse9I AATT 6 cut(s) 109, 342, 679, 691, 725, 1007
SsiI CCGC 7 cut(s) 276, 294, 392, 454, 508, 1298, 1315
SspMI CTAG 4 cut(s) 243, 758, 792, 939
StyD4I CCNGG 2 cut(s) 309, 1027
StyI CCWWGG 3 cut(s) 782, 1197, 1340
TaaI ACNGT 2 cut(s) 226, 815
TaiI ACGT 1 cut(s) 442
TaqI TCGA 5 cut(s) 232, 427, 677, 729, 884
TaqII GACCGA 1 cut(s) 1151
TasI AATT 6 cut(s) 109, 342, 679, 691, 725, 1007
TatI WGTACW 1 cut(s) 702
TauI GCSGC 5 cut(s) 278, 395, 456, 510, 1300
TfiI GAWTC 7 cut(s) 144, 154, 182, 285, 589, 674, 1247
Tru1I TTAA 2 cut(s) 527, 579
Tru9I TTAA 2 cut(s) 527, 579
TscAI CASTG 5 cut(s) 214, 222, 231, 705, 820
TseFI GTSAC 2 cut(s) 815, 973
TseI GCWGC 3 cut(s) 164, 212, 1163
Tsp45I GTSAC 2 cut(s) 815, 973
TspDTI ATGAA 2 cut(s) 1142, 1266
TspRI CASTG 5 cut(s) 214, 222, 231, 705, 820
Tth111I GACNNNGTC 1 cut(s) 1138
XagI CCTNNNNNAGG 1 cut(s) 616
XapI RAATTY 4 cut(s) 109, 679, 725, 1007
XceI RCATGY 3 cut(s) 415, 496, 1309
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 4 cut(s) 243, 758, 792, 939
Zsp2I ATGCAT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.