Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0013905

Physical Location & Seq

Genomic Coordinates Reverse (-)

66828855 .. 66830717

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGGTGCTTCAGGAAAATGGGTGAAATCCCTTATAGGTTTCAAAAAACCCGACAAAGATGACCAAGAAAAGTTGGGTGGGAAGAACAAGAAATGGAAGCTATGGAGGAATTCGTCAGGGGATTTTGGGTCTTCTTGGAAAGGATTCAAAGGGAATCACAGGGCTGCTTCTGAAGGTGGCTACAGTGTTCGAGCTCACCCTAGAGATTTCAGAGTTGTCAGGCAAGAATGGGCCGCTATCAGAATCCAAACCGCTTTCCGAGGCTTCCTGAAGGGCTTGAAGGCGTTGAGAGGAATTGTGAGGCTTCAAGCTCTGGTTCGGGGAAGACAGGTGAGGAAGCAAGCGGCTGTAACACTGAGGTGCATGCAAGCTCTCGTTCGAGTTCAGGCACGTGTCAGGGCTCGCCGCGTGCGAATGTCCATTGAAGGCCAAGCTGTGCAGAACATGCTCAATGAGCGCCGCACCCAAGCTGATATCTTAAAAGAAGCTGAGGAAGGGTGGTGTGATAGCAAGGGAACAATAGATGATGTTAAAGCAAAGATTCAAATGAGGCAAGAAGGAGCCTTTAAAAGGGAGAGAGCAATTGCTTACTCTCTTGCTCAGAAGCAATGGAGATCAACGCCAGATTCAAATTCACGCATCAATTCTTCGGTGTACTCTCTCAATAAGAACAATGAATTCGACAAGAATAGCTGGGGTTGGAGTTGGTTAGAGCGCTGGATGTCAGCTAAGCCATGGGAGACTAGGTTGATGGAACAATCCAACAGTGACCCATCTGAGATCACACCTCTTCCAAAGAAATGTTCAGATCCTTTTGTTGGCATTGGCAAACATTCGAAATCTTCAGAGCGACCATGCTCAGTCAAAGTGAGAAGGAACAATGTTACTACTAGGATTTCTGCTAAGCCTCCCCACATTGGGCAAGTGACTACTCGCTCATCTTCAAGCCCGAGTTCAGAATTTCAGTACGATGACAGCCCTGGCTCATCTTCACTTACATCAACAACACCGGTTTCTGGAAACACCGGATTGGCTTCGGATAGAACAGATGAGAGCAGTAACTTTAGGCCAAGTTATATGAACCTGACCGAGTCAACTAAGGCAAAGCAGAAAGCAGCAAGTTATCAATCTCACAGAACAAGGCAATCCATGGATGAGTTTCAGTTTCTCAAGAGGTCTGGGGCTTTCTCTAATGGGGATTCCAAAAGTAGTGCTGGTTCTGAGCCTTCATCAGTCAACTTCTCCAAGCCGCTTGGCATGCCAACCCGCTTGGATAAGAACTCTTTGAAACCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

432

Amino Acids

48.57

Weight (kDa)

10.43

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26180
fragaria_vesca	FvH4_2g31650
malus_domestica	MD08G1064300.v1.1 MD15G1057400.v1.1
prunus_persica	Prupe.1G409900_v2.0.a1
pyrus_communis	pycom08g05280
rosa_chinensis	RchiOBHm_Chr6g0311171
rosa_laevigata	RLG00000010430
rosa_multiflora	Rmu_sc0008967.1_g000015 Rmu_sc0016962.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157940
rosa_rugosa	Rorug06G0386000
rosa_samantha	Rh6AG500100 Rh6BG510800 Rh6CG516500 Rh6DG503000
rosa_wichuraiana	Rw6G043560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	408
AciI	CCGC	7 cut(s)	234, 252, 344, 406, 460, 1250, 1267
AclWI	GGATC	1 cut(s)	803
AcsI	RAATTY	4 cut(s)	109, 631, 677, 959
AcuI	CTGAAG	3 cut(s)	192, 290, 828
AcvI	CACGTG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	656, 968
AfeI	AGCGCT	1 cut(s)	716
AfiI	CCNNNNNNNGG	5 cut(s)	570, 818, 917, 918, 1016
AflIII	ACRYGT	1 cut(s)	391
AgeI	ACCGGT	1 cut(s)	1009
AgsI	TTSAA	9 cut(s)	43, 148, 280, 308, 425, 545, 630, 945, 1288
AjnI	CCWGG	1 cut(s)	979
AjuI	GAANNNNNNNTTGG	2 cut(s)	787, 819
AleI	CACNNNNGTG	1 cut(s)	358
AluBI	AGCT	9 cut(s)	100, 194, 311, 371, 434, 470, 488, 693, 728
AluI	AGCT	9 cut(s)	100, 194, 311, 371, 434, 470, 488, 693, 728
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	949
Aor51HI	AGCGCT	1 cut(s)	716
AoxI	GGCC	3 cut(s)	231, 427, 1067
ApeKI	GCWGC	2 cut(s)	164, 1115
ApoI	RAATTY	4 cut(s)	109, 631, 677, 959
AsiGI	ACCGGT	1 cut(s)	1009
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	459, 717
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	3 cut(s)	34, 188, 343
AsuII	TTCGAA	1 cut(s)	836
AvaI	CYCGRG	1 cut(s)	949
BanII	GRGCYC	2 cut(s)	196, 403
BbrPI	CACGTG	1 cut(s)	392
BbsI	GAAGAC	2 cut(s)	123, 331
Bbv12I	GWGCWC	1 cut(s)	196
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	151, 1127
BccI	CCATC	2 cut(s)	745, 781
BciT130I	CCWGG	1 cut(s)	981
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	3 cut(s)	201, 744, 891
BfmI	CTRYAG	1 cut(s)	181
BfoI	RGCGCY	2 cut(s)	460, 718
BisI	GCNGC	7 cut(s)	165, 234, 345, 406, 460, 1116, 1250
BlpI	GCTNAGC	2 cut(s)	729, 903
BlsI	GCNGC	7 cut(s)	166, 235, 346, 407, 461, 1117, 1251
Bme1390I	CCNGG	1 cut(s)	981
BmeT110I	CYCGRG	1 cut(s)	949
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	981
BmsI	GCATC	1 cut(s)	648
BpiI	GAAGAC	2 cut(s)	123, 331
Bpu10I	CCTNAGC	1 cut(s)	489
Bpu1102I	GCTNAGC	2 cut(s)	729, 903
Bpu14I	TTCGAA	1 cut(s)	836
BpuEI	CTTGAG	1 cut(s)	1154
BsaAI	YACGTR	1 cut(s)	392
BsaJI	CCNNGG	5 cut(s)	259, 734, 979, 1149, 1292
BsaWI	WCCGGW	2 cut(s)	1009, 1025
BsaXI	ACNNNNNCTCC	2 cut(s)	731, 761
Bsc4I	CCNNNNNNNGG	5 cut(s)	570, 818, 917, 918, 1016
Bse118I	RCCGGY	1 cut(s)	1009
Bse3DI	GCAATG	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	981
BseDI	CCNNGG	5 cut(s)	259, 734, 979, 1149, 1292
BseGI	GGATG	2 cut(s)	726, 1159
BseLI	CCNNNNNNNGG	5 cut(s)	570, 818, 917, 918, 1016
BseMI	GCAATG	1 cut(s)	614
BseMII	CTCAG	6 cut(s)	347, 480, 614, 768, 873, 1212
BseXI	GCAGC	2 cut(s)	151, 1127
BseYI	CCCAGC	1 cut(s)	693
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	233, 429, 1069
BshTI	ACCGGT	1 cut(s)	1009
BsiHKAI	GWGCWC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	949
BsiSI	CCGG	2 cut(s)	1010, 1026
BslI	CCNNNNNNNGG	5 cut(s)	570, 818, 917, 918, 1016
BsmAI	GTCTC	1 cut(s)	734
BsnI	GGCC	3 cut(s)	233, 429, 1069
BsoBI	CYCGRG	1 cut(s)	949
Bsp119I	TTCGAA	1 cut(s)	836
Bsp1286I	GDGCHC	2 cut(s)	196, 403
Bsp143I	GATC	3 cut(s)	614, 780, 808
Bsp1720I	GCTNAGC	2 cut(s)	729, 903
Bsp19I	CCATGG	2 cut(s)	734, 1149
BspACI	CCGC	7 cut(s)	234, 252, 344, 406, 460, 1250, 1267
BspANI	GGCC	3 cut(s)	233, 429, 1069
BspCNI	CTCAG	6 cut(s)	348, 481, 613, 769, 872, 1213
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	803
BspT104I	TTCGAA	1 cut(s)	836
BsrDI	GCAATG	1 cut(s)	614
BsrFI	RCCGGY	1 cut(s)	1009
BssAI	RCCGGY	1 cut(s)	1009
BssECI	CCNNGG	5 cut(s)	259, 734, 979, 1149, 1292
BssMI	GATC	3 cut(s)	614, 780, 808
BssT1I	CCWWGG	3 cut(s)	734, 1149, 1292
Bst2UI	CCWGG	1 cut(s)	981
Bst4CI	ACNGT	2 cut(s)	185, 767
Bst6I	CTCTTC	1 cut(s)	795
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstBAI	YACGTR	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	836
BstC8I	GCNNGC	6 cut(s)	342, 365, 369, 403, 410, 1259
BstDEI	CTNAG	9 cut(s)	356, 489, 600, 729, 777, 859, 903, 1098, 1221
BstDSI	CCRYGG	2 cut(s)	734, 1149
BstENI	CCTNNNNNAGG	1 cut(s)	568
BstF5I	GGATG	2 cut(s)	726, 1159
BstFNI	CGCG	1 cut(s)	408
BstH2I	RGCGCY	2 cut(s)	460, 718
BstHHI	GCGC	2 cut(s)	459, 717
BstKTI	GATC	3 cut(s)	617, 783, 811
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	3 cut(s)	614, 780, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	445, 454, 1258
BstNI	CCWGG	1 cut(s)	981
BstNSI	RCATGY	3 cut(s)	367, 448, 1261
BstSCI	CCNGG	1 cut(s)	979
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	151, 1127
BstV2I	GAAGAC	2 cut(s)	123, 331
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
BsuRI	GGCC	3 cut(s)	233, 429, 1069
BtgI	CCRYGG	2 cut(s)	734, 1149
BtsCI	GGATG	2 cut(s)	726, 1159
BtsIMutI	CAGTG	3 cut(s)	190, 353, 772
Cac8I	GCNNGC	6 cut(s)	342, 365, 369, 403, 410, 1259
CfoI	GCGC	2 cut(s)	459, 717
Cfr10I	RCCGGY	1 cut(s)	1009
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	655, 967
CspAI	ACCGGT	1 cut(s)	1009
CviAII	CATG	6 cut(s)	364, 445, 735, 855, 1150, 1258
CviQI	GTAC	2 cut(s)	655, 967
DdeI	CTNAG	9 cut(s)	356, 489, 600, 729, 777, 859, 903, 1098, 1221
DpnI	GATC	3 cut(s)	616, 782, 810
DpnII	GATC	3 cut(s)	614, 780, 808
DraI	TTTAAA	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
Ecl136II	GAGCTC	1 cut(s)	194
Eco130I	CCWWGG	3 cut(s)	734, 1149, 1292
Eco24I	GRGCYC	2 cut(s)	196, 403
Eco32I	GATATC	1 cut(s)	475
Eco47III	AGCGCT	1 cut(s)	716
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	3 cut(s)	192, 290, 828
Eco72I	CACGTG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	949
EcoICRI	GAGCTC	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	568
EcoRI	GAATTC	2 cut(s)	109, 677
EcoRII	CCWGG	1 cut(s)	979
EcoRV	GATATC	1 cut(s)	475
EcoT14I	CCWWGG	3 cut(s)	734, 1149, 1292
EcoT38I	GRGCYC	2 cut(s)	196, 403
ErhI	CCWWGG	3 cut(s)	734, 1149, 1292
FaeI	CATG	6 cut(s)	367, 448, 738, 858, 1153, 1261
FatI	CATG	6 cut(s)	363, 444, 734, 854, 1149, 1257
FauI	CCCGC	1 cut(s)	1274
Fnu4HI	GCNGC	7 cut(s)	165, 234, 345, 406, 460, 1116, 1250
FokI	GGATG	2 cut(s)	733, 1166
FriOI	GRGCYC	2 cut(s)	196, 403
Fsp4HI	GCNGC	7 cut(s)	165, 234, 345, 406, 460, 1116, 1250
FspBI	CTAG	3 cut(s)	201, 744, 891
GlaI	GCGC	2 cut(s)	458, 716
GluI	GCNGC	7 cut(s)	165, 234, 345, 406, 460, 1116, 1250
GsaI	CCCAGC	1 cut(s)	697
HaeII	RGCGCY	2 cut(s)	460, 718
HaeIII	GGCC	3 cut(s)	233, 429, 1069
HapII	CCGG	2 cut(s)	1010, 1026
HhaI	GCGC	2 cut(s)	459, 717
Hin1II	CATG	6 cut(s)	367, 448, 738, 858, 1153, 1261
Hin6I	GCGC	2 cut(s)	457, 715
HinP1I	GCGC	2 cut(s)	457, 715
HincII	GTYRAC	2 cut(s)	1095, 1237
HindII	GTYRAC	2 cut(s)	1095, 1237
HinfI	GANTC	7 cut(s)	144, 154, 243, 541, 626, 1091, 1199
HpaII	CCGG	2 cut(s)	1010, 1026
HphI	GGTGA	3 cut(s)	34, 188, 343
Hpy166II	GTNNAC	3 cut(s)	655, 1095, 1237
Hpy188III	TCNNGA	4 cut(s)	12, 268, 1017, 1171
Hpy8I	GTNNAC	3 cut(s)	655, 1095, 1237
HpyAV	CCTTC	8 cut(s)	167, 265, 274, 419, 488, 551, 867, 1236
HpyCH4III	ACNGT	2 cut(s)	185, 767
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	3 cut(s)	363, 367, 439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	445, 454, 1258
HpyF3I	CTNAG	9 cut(s)	356, 489, 600, 729, 777, 859, 903, 1098, 1221
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	6 cut(s)	367, 448, 738, 858, 1153, 1261
HspAI	GCGC	2 cut(s)	457, 715
Kzo9I	GATC	3 cut(s)	614, 780, 808
LmnI	GCTCC	1 cut(s)	560
Lsp1109I	GCAGC	2 cut(s)	151, 1127
LweI	GCATC	1 cut(s)	648
MaeI	CTAG	3 cut(s)	201, 744, 891
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	5 cut(s)	349, 767, 883, 925, 1058
MalI	GATC	3 cut(s)	616, 782, 810
MboI	GATC	3 cut(s)	614, 780, 808
MboII	GAAGA	8 cut(s)	94, 123, 336, 639, 782, 834, 933, 981
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	808
MhlI	GDGCHC	2 cut(s)	196, 403
MluCI	AATT	7 cut(s)	109, 294, 582, 631, 643, 677, 959
MlyI	GAGTC	1 cut(s)	1100
MmeI	TCCRAC	2 cut(s)	680, 786
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	3 cut(s)	479, 531, 567
MslI	CAYNNNNRTG	1 cut(s)	358
MspI	CCGG	2 cut(s)	1010, 1026
MspR9I	CCNGG	1 cut(s)	981
MunI	CAATTG	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	981
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	3 cut(s)	445, 454, 1258
NcoI	CCATGG	2 cut(s)	734, 1149
NdeII	GATC	3 cut(s)	614, 780, 808
NlaIII	CATG	6 cut(s)	367, 448, 738, 858, 1153, 1261
NlaIV	GGNNCC	1 cut(s)	562
NmuCI	GTSAC	2 cut(s)	767, 925
NspI	RCATGY	3 cut(s)	367, 448, 1261
NspV	TTCGAA	1 cut(s)	836
OliI	CACNNNNGTG	1 cut(s)	358
PaeI	GCATGC	2 cut(s)	367, 1261
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	6 cut(s)	144, 154, 243, 541, 626, 1199
PflFI	GACNNNGTC	1 cut(s)	1090
PinAI	ACCGGT	1 cut(s)	1009
PkrI	GCNGC	7 cut(s)	166, 235, 346, 407, 461, 1117, 1251
PleI	GAGTC	1 cut(s)	1099
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	1099
Ppu21I	YACGTR	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	979
PspCI	CACGTG	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	979
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	231
PsrI	GAACNNNNNNTAC	2 cut(s)	1201, 1233
PsuI	RGATCY	1 cut(s)	808
PsyI	GACNNNGTC	1 cut(s)	1090
RsaI	GTAC	2 cut(s)	656, 968
RsaNI	GTAC	2 cut(s)	655, 967
RseI	CAYNNNNRTG	1 cut(s)	358
SacI	GAGCTC	1 cut(s)	196
SaqAI	TTAA	3 cut(s)	479, 531, 567
SatI	GCNGC	7 cut(s)	165, 234, 345, 406, 460, 1116, 1250
Sau3AI	GATC	3 cut(s)	614, 780, 808
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	1100
ScrFI	CCNGG	1 cut(s)	981
SduI	GDGCHC	2 cut(s)	196, 403
SfaNI	GCATC	1 cut(s)	648
SfcI	CTRYAG	1 cut(s)	181
SfuI	TTCGAA	1 cut(s)	836
SmiMI	CAYNNNNRTG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	1169
SmoI	CTYRAG	1 cut(s)	1169
SphI	GCATGC	2 cut(s)	367, 1261
Sse9I	AATT	7 cut(s)	109, 294, 582, 631, 643, 677, 959
SsiI	CCGC	7 cut(s)	234, 252, 344, 406, 460, 1250, 1267
SspMI	CTAG	3 cut(s)	201, 744, 891
SstI	GAGCTC	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	979
StyI	CCWWGG	3 cut(s)	734, 1149, 1292
TaaI	ACNGT	2 cut(s)	185, 767
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	4 cut(s)	190, 379, 681, 836
TaqII	GACCGA	1 cut(s)	1103
TasI	AATT	7 cut(s)	109, 294, 582, 631, 643, 677, 959
TatI	WGTACW	1 cut(s)	654
TauI	GCSGC	5 cut(s)	236, 347, 408, 462, 1252
TfiI	GAWTC	6 cut(s)	144, 154, 243, 541, 626, 1199
Tru1I	TTAA	3 cut(s)	479, 531, 567
Tru9I	TTAA	3 cut(s)	479, 531, 567
TscAI	CASTG	3 cut(s)	190, 360, 772
TseFI	GTSAC	2 cut(s)	767, 925
TseI	GCWGC	2 cut(s)	164, 1115
Tsp45I	GTSAC	2 cut(s)	767, 925
TspDTI	ATGAA	3 cut(s)	690, 1094, 1218
TspRI	CASTG	3 cut(s)	190, 360, 772
Tth111I	GACNNNGTC	1 cut(s)	1090
XagI	CCTNNNNNAGG	1 cut(s)	568
XapI	RAATTY	4 cut(s)	109, 631, 677, 959
XceI	RCATGY	3 cut(s)	367, 448, 1261
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	3 cut(s)	201, 744, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.