MD08G1222400.v1.1

clathrin assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0014227
Physical Location & Seq
Forward (+)
28499312 .. 28502001
2690 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1222400.v1.1.491

Sequence Viewer

Length: 1812 bp
ATGGCTTCAAGCAAATTTAGAAGAGCTTTGGGGGCCGTGAAGGACCAAACCAGCATAGGCCTCGCCAAAGTTGGTAGCAGCGCCTCTTTGGCGGACCTAGACGTAGCCATTGTGAAAGCAACAAGACACGAAGAATACCCGACCGAGGAGAAATACGTACGAGAAATTCTCAGCTTAACATGCTACTCACGCGATTTCATCAGCGCTTGCATCAACACCATCTCCCGGCGCCTGAACAAGACCAAAAACTGGATCGTCGCCCTCAAGACCCTCATGTTAGTCCAACGGCTGCTGTCCGAGGGCGACCCTGCTTACGAACAAGAAATATTTTTCTCCACAAGGCGCGGCACTCGCTTTCTCAACATGTCTGATTTTCGCGACACCTCACGCTCCAATTCCTGGGACTATTCTGCGTTTGTGCGCACGTATGCATTGTATCTGGACGAACGGCTTGAGTTCCGAATGCAAAGCCGGCGTGGGAAACGCAGTGCATTCGGGTTTGATGAAGATGAATTCGAAGATCCTCAGGAGGCGGCCAATAATTTTACCAACCAGCAGTCATGTCCGAAAGCGACGCCGGTGCATGAAATGAAAGCCGACAAGTTGTTTTCTAGGATGCAGCATTTGCAGCAGCTCCTTGAGCGCTTCTTAGCATGTCGCCCAACAGGCGTAGCAAAGAACAATAGGGTTGTAATAGTGGCCTTGTATCCGATAGTAAAAGAGAGTTTCCAGGTATACTACGACATAACAGAAATAATGGGCATCTTAATAGACCGCTTCATGGAGCTGGAGATCCCGGACTGTGCCAAGGTGTACGAGATCTTCTGCCGCATCGGAAAGCAATTCGATGAACTGGACATGCTCTATGGATGGTGCAAACAAATCGGGATTGCGTGCTCCTCAGAGTACCCGGAGGTTGAGAGGATTACCCCCAAGAAGCTGGAGGTGATGGACGAGTACATACGGGACAAGTCGGCTTTGGCTCAAGGCAAGAGATCGGTAAAGGAGCTACTAGACCAACAGAAGATTGATGTGGCCAACAACGATAAAGAATCAAATCATGGGGAAGACGAAGAAGAAGACATGAATGCAATGAAGGCGCTGCCACCGCCCGAGGGTTTCGTTGAGGAAAACAATAACAAAGAGAAAGAACCAGTAAAGGAAGAGCAAATTAAGAAACCGCAACAAGAAGAAGGCGATCTGTTGAACTTGGGAGAAGACGCTGTGTCGAGCAACGAACACGCTGACAAATTGGCGTTGGCTTTGTTCAACGGCGCCACTGAACAAGCACCAGCAGGTCCACCGGCATGGGAAGCGTTTGCTAACGAAGCTGATTGGGAAGCCGCGTTAGTCCAGTCGGCAAGCCACTTGTCAAATCAAAAGGCGTCCCTCGGGGGAGGTTTTGACTTGTTGTTGCTGGACGGATTGTACCAGCAAGCGGAGGTATCAGCCGCAATGGCAGGGCCAGGGTATGGAGTGAGTGGGAGTGCGAGCAGTGTTGCATTAGGGTCTGCAGGACGGCCTGCAATGCTAGCATTGCCTGCACCACCACCATCATCATCGTCGTCGTCGTTAGATCATCCAAGCAAGTCAAGTGTACACGTGGACCCGTTTGCTGCGTCGTTAGTAGTGCCGCCGCCATCATACGTGCAAATGTCAGACCTGGAGAGGAAGCAGAAGCTGTTGATGGACGAGCAGTTGATGTGGCATCAGTATGCAAGGGATGGGATGCAAGGGCAGATAGGATTGACAAAACTACAACATAACCCTCATCATAACATAAACATGGGAGGTTACACACATACCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

604

Amino Acids

67.53

Weight (kDa)

5.25

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 32 - 323 7.1e-88 ANTH domain
ENTH PF01417 34 - 144 5.5e-06 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03050
fragaria_vesca FvH4_5g30570 FvH4_5g30590
malus_domestica MD08G1222400.v1.1 MD15G1415800.v1.1
prunus_persica Prupe.1G560200_v2.0.a1
pyrus_communis pycom15g36900
rosa_chinensis RchiOBHm_Chr7g0225461
rosa_laevigata RLG00000001817
rosa_multiflora Rmu_sc0000259.1_g000009
rosa_roxburghii Rroxscaffold_3G00233800
rosa_rugosa Rorug07G0229600.1
rosa_samantha Rh7AG373600 Rh7BG364300 Rh7CG391700 Rh7DG375500
rosa_wichuraiana Rw7G031680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 1286
AccB1I GGYRCC 2 cut(s) 228, 1274
AccB7I CCANNNNNTGG 3 cut(s) 249, 399, 1472
AccI GTMKAC 1 cut(s) 735
AccII CGCG 4 cut(s) 192, 345, 378, 1346
AclWI GGATC 3 cut(s) 260, 515, 787
AcoI YGGCCR 2 cut(s) 534, 1035
AcsI RAATTY 3 cut(s) 14, 165, 512
AcvI CACGTG 1 cut(s) 1603
AcyI GRCGYC 4 cut(s) 229, 575, 1275, 1385
AfaI GTAC 6 cut(s) 159, 815, 908, 959, 1430, 1599
AfeI AGCGCT 2 cut(s) 205, 644
AfiI CCNNNNNNNGG 8 cut(s) 145, 225, 249, 399, 781, 1115, 1438, 1472
AflIII ACRYGT 2 cut(s) 363, 1600
AgsI TTSAA 3 cut(s) 9, 1207, 1270
AhdI GACNNNNNGTC 1 cut(s) 1225
AjnI CCWGG 4 cut(s) 398, 729, 1465, 1662
AluBI AGCT 8 cut(s) 26, 174, 634, 787, 940, 1009, 1331, 1681
AluI AGCT 8 cut(s) 26, 174, 634, 787, 940, 1009, 1331, 1681
Alw21I GWGCWC 1 cut(s) 899
AlwI GGATC 3 cut(s) 260, 515, 787
AlwNI CAGNNNCTG 1 cut(s) 1681
Ama87I CYCGRG 2 cut(s) 1112, 1391
Aor51HI AGCGCT 2 cut(s) 205, 644
AoxI GGCC 7 cut(s) 33, 58, 534, 699, 1035, 1463, 1520
ApeKI GCWGC 7 cut(s) 78, 289, 619, 628, 631, 1102, 1616
ApoI RAATTY 3 cut(s) 14, 165, 512
AspLEI GCGC 8 cut(s) 83, 206, 231, 345, 423, 645, 1102, 1277
AspS9I GGNCC 6 cut(s) 33, 43, 94, 1298, 1463, 1606
AsuC2I CCSGG 3 cut(s) 226, 797, 911
AsuHPI GGTGA 1 cut(s) 958
AsuII TTCGAA 1 cut(s) 516
AsuNHI GCTAGC 1 cut(s) 1531
AvaI CYCGRG 2 cut(s) 1112, 1391
AvaII GGWCC 4 cut(s) 43, 94, 1298, 1606
AxyI CCTNAGG 1 cut(s) 525
BalI TGGCCA 1 cut(s) 1037
BanI GGYRCC 2 cut(s) 228, 1274
BarI GAAGNNNNNNTAC 2 cut(s) 806, 838
BbrPI CACGTG 1 cut(s) 1603
BbsI GAAGAC 3 cut(s) 1074, 1086, 1224
Bbv12I GWGCWC 1 cut(s) 899
BbvI GCAGC 7 cut(s) 90, 276, 631, 640, 643, 1089, 1603
BccI CCATC 7 cut(s) 227, 864, 943, 1561, 1648, 1681, 1718
BceAI ACGGC 5 cut(s) 20, 302, 464, 1288, 1535
BcgI CGANNNNNNTGC 8 cut(s) 43, 77, 475, 509, 562, 596, 865, 899
BciT130I CCWGG 4 cut(s) 400, 731, 1467, 1664
BciVI GTATCC 1 cut(s) 717
BcnI CCSGG 3 cut(s) 226, 797, 911
BfaI CTAG 4 cut(s) 98, 612, 1013, 1532
BfmI CTRYAG 1 cut(s) 1512
BfoI RGCGCY 6 cut(s) 84, 207, 232, 646, 1103, 1278
BfuAI ACCTGC 1 cut(s) 1286
BfuI GTATCC 1 cut(s) 717
BglI GCCNNNNNGGC 3 cut(s) 89, 666, 1457
BglII AGATCT 1 cut(s) 819
Bme1390I CCNGG 7 cut(s) 226, 400, 731, 797, 911, 1467, 1664
Bme18I GGWCC 4 cut(s) 43, 94, 1298, 1606
BmeRI GACNNNNNGTC 1 cut(s) 1225
BmeT110I CYCGRG 2 cut(s) 1112, 1391
BmgT120I GGNCC 6 cut(s) 33, 43, 94, 1298, 1463, 1606
BmiI GGNNCC 4 cut(s) 34, 230, 1276, 1608
BmrFI CCNGG 7 cut(s) 226, 400, 731, 797, 911, 1467, 1664
BmsI GCATC 6 cut(s) 219, 606, 771, 840, 1717, 1719
BmtI GCTAGC 1 cut(s) 1535
BpiI GAAGAC 3 cut(s) 1074, 1086, 1224
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpmI CTGGAG 3 cut(s) 809, 962, 1685
Bpu14I TTCGAA 1 cut(s) 516
BpuEI CTTGAG 4 cut(s) 248, 473, 659, 969
BpuMI CCSGG 3 cut(s) 226, 797, 911
BsaAI YACGTR 4 cut(s) 157, 426, 1603, 1648
BsaHI GRCGYC 4 cut(s) 229, 575, 1275, 1385
BsaJI CCNNGG 7 cut(s) 144, 297, 399, 807, 1113, 1390, 1466
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 8 cut(s) 145, 225, 249, 399, 781, 1115, 1438, 1472
Bse118I RCCGGY 3 cut(s) 471, 577, 1303
Bse1I ACTGG 4 cut(s) 254, 858, 1154, 1354
Bse21I CCTNAGG 1 cut(s) 525
Bse3DI GCAATG 4 cut(s) 1098, 1461, 1533, 1535
BseBI CCWGG 4 cut(s) 400, 731, 1467, 1664
BseDI CCNNGG 7 cut(s) 144, 297, 399, 807, 1113, 1390, 1466
BseGI GGATG 5 cut(s) 621, 875, 1579, 1729, 1734
BseLI CCNNNNNNNGG 8 cut(s) 145, 225, 249, 399, 781, 1115, 1438, 1472
BseMI GCAATG 4 cut(s) 1098, 1461, 1533, 1535
BseMII CTCAG 3 cut(s) 184, 539, 915
BseNI ACTGG 4 cut(s) 254, 858, 1154, 1354
BseRI GAGGAG 2 cut(s) 161, 889
BseXI GCAGC 7 cut(s) 90, 276, 631, 640, 643, 1089, 1603
BsgI GTGCAG 1 cut(s) 1527
Bsh1236I CGCG 4 cut(s) 192, 345, 378, 1346
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 7 cut(s) 35, 60, 536, 701, 1037, 1465, 1522
BshNI GGYRCC 2 cut(s) 228, 1274
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 899
BsiHKCI CYCGRG 2 cut(s) 1112, 1391
BsiSI CCGG 6 cut(s) 226, 472, 578, 797, 911, 1304
BsiWI CGTACG 1 cut(s) 157
BslFI GGGAC 3 cut(s) 416, 980, 1372
BslI CCNNNNNNNGG 8 cut(s) 145, 225, 249, 399, 781, 1115, 1438, 1472
BsmFI GGGAC 3 cut(s) 416, 980, 1372
BsmI GAATGC 3 cut(s) 468, 491, 1093
BsnI GGCC 7 cut(s) 35, 60, 536, 701, 1037, 1465, 1522
BsoBI CYCGRG 2 cut(s) 1112, 1391
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 899
Bsp1407I TGTACA 1 cut(s) 1597
Bsp143I GATC 7 cut(s) 252, 520, 792, 819, 995, 1198, 1576
Bsp68I TCGCGA 1 cut(s) 378
BspANI GGCC 7 cut(s) 35, 60, 536, 701, 1037, 1465, 1522
BspCNI CTCAG 3 cut(s) 183, 538, 914
BspFNI CGCG 4 cut(s) 192, 345, 378, 1346
BspLI GGNNCC 4 cut(s) 34, 230, 1276, 1608
BspMAI CTGCAG 1 cut(s) 1516
BspMI ACCTGC 1 cut(s) 1286
BspOI GCTAGC 1 cut(s) 1535
BspPI GGATC 3 cut(s) 260, 515, 787
BspQI GCTCTTC 2 cut(s) 16, 1158
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 2 cut(s) 228, 1274
BsrDI GCAATG 4 cut(s) 1098, 1461, 1533, 1535
BsrFI RCCGGY 3 cut(s) 471, 577, 1303
BsrGI TGTACA 1 cut(s) 1597
BsrI ACTGG 4 cut(s) 254, 858, 1154, 1354
BssAI RCCGGY 3 cut(s) 471, 577, 1303
BssECI CCNNGG 7 cut(s) 144, 297, 399, 807, 1113, 1390, 1466
BssMI GATC 7 cut(s) 252, 520, 792, 819, 995, 1198, 1576
BssNAI GTATAC 1 cut(s) 736
BssNI GRCGYC 4 cut(s) 229, 575, 1275, 1385
BssT1I CCWWGG 1 cut(s) 807
Bst1107I GTATAC 1 cut(s) 736
Bst2UI CCWGG 4 cut(s) 400, 731, 1467, 1664
Bst4CI ACNGT 1 cut(s) 803
Bst6I CTCTTC 2 cut(s) 16, 1158
BstACI GRCGYC 4 cut(s) 229, 575, 1275, 1385
BstAPI GCANNNNNTGC 2 cut(s) 625, 1541
BstAUI TGTACA 1 cut(s) 1597
BstBAI YACGTR 4 cut(s) 157, 426, 1603, 1648
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 9 cut(s) 208, 473, 895, 1363, 1437, 1492, 1524, 1533, 1542
BstDEI CTNAG 4 cut(s) 170, 525, 649, 901
BstF5I GGATG 5 cut(s) 621, 875, 1579, 1729, 1734
BstFNI CGCG 4 cut(s) 192, 345, 378, 1346
BstH2I RGCGCY 6 cut(s) 84, 207, 232, 646, 1103, 1278
BstHHI GCGC 8 cut(s) 83, 206, 231, 345, 423, 645, 1102, 1277
BstKTI GATC 7 cut(s) 255, 523, 795, 822, 998, 1201, 1579
BstMBI GATC 7 cut(s) 252, 520, 792, 819, 995, 1198, 1576
BstMCI CGRYCG 1 cut(s) 144
BstNI CCWGG 4 cut(s) 400, 731, 1467, 1664
BstNSI RCATGY 4 cut(s) 183, 367, 657, 862
BstSCI CCNGG 7 cut(s) 224, 398, 729, 795, 909, 1465, 1662
BstSFI CTRYAG 1 cut(s) 1512
BstSNI TACGTA 1 cut(s) 157
BstUI CGCG 4 cut(s) 192, 345, 378, 1346
BstV1I GCAGC 7 cut(s) 90, 276, 631, 640, 643, 1089, 1603
BstV2I GAAGAC 3 cut(s) 1074, 1086, 1224
BstX2I RGATCY 3 cut(s) 520, 792, 819
BstXI CCANNNNNNTGG 2 cut(s) 940, 1308
BstYI RGATCY 3 cut(s) 520, 792, 819
BstZ17I GTATAC 1 cut(s) 736
Bsu36I CCTNAGG 1 cut(s) 525
BsuI GTATCC 1 cut(s) 717
BsuRI GGCC 7 cut(s) 35, 60, 536, 701, 1037, 1465, 1522
BtsCI GGATG 5 cut(s) 621, 875, 1579, 1729, 1734
BtsI GCAGTG 2 cut(s) 493, 1501
BtsIMutI CAGTG 3 cut(s) 493, 1278, 1501
BtuMI TCGCGA 1 cut(s) 378
BveI ACCTGC 1 cut(s) 1286
Cac8I GCNNGC 9 cut(s) 208, 473, 895, 1363, 1437, 1492, 1524, 1533, 1542
CaiI CAGNNNCTG 1 cut(s) 1681
CfoI GCGC 8 cut(s) 83, 206, 231, 345, 423, 645, 1102, 1277
Cfr10I RCCGGY 3 cut(s) 471, 577, 1303
Cfr13I GGNCC 6 cut(s) 33, 43, 94, 1298, 1463, 1606
CseI GACGC 4 cut(s) 583, 1229, 1374, 1608
Csp6I GTAC 6 cut(s) 158, 814, 907, 958, 1429, 1598
CviQI GTAC 6 cut(s) 158, 814, 907, 958, 1429, 1598
DdeI CTNAG 4 cut(s) 170, 525, 649, 901
DinI GGCGCC 2 cut(s) 230, 1276
DpnI GATC 7 cut(s) 254, 522, 794, 821, 997, 1200, 1578
DpnII GATC 7 cut(s) 252, 520, 792, 819, 995, 1198, 1576
DriI GACNNNNNGTC 1 cut(s) 1225
EaeI YGGCCR 2 cut(s) 534, 1035
Eam1104I CTCTTC 2 cut(s) 16, 1158
Eam1105I GACNNNNNGTC 1 cut(s) 1225
EarI CTCTTC 2 cut(s) 16, 1158
EciI GGCGGA 1 cut(s) 107
Eco105I TACGTA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 807
Eco147I AGGCCT 1 cut(s) 60
Eco47I GGWCC 4 cut(s) 43, 94, 1298, 1606
Eco47III AGCGCT 2 cut(s) 205, 644
Eco72I CACGTG 1 cut(s) 1603
Eco81I CCTNAGG 1 cut(s) 525
Eco88I CYCGRG 2 cut(s) 1112, 1391
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 4 cut(s) 398, 729, 1465, 1662
EcoT14I CCWWGG 1 cut(s) 807
EcoT22I ATGCAT 1 cut(s) 433
EgeI GGCGCC 2 cut(s) 230, 1276
EheI GGCGCC 2 cut(s) 230, 1276
ErhI CCWWGG 1 cut(s) 807
FaqI GGGAC 3 cut(s) 416, 980, 1372
FblI GTMKAC 1 cut(s) 735
FokI GGATG 5 cut(s) 628, 882, 1566, 1736, 1741
FspAI RTGCGCAY 1 cut(s) 422
FspBI CTAG 4 cut(s) 98, 612, 1013, 1532
FspI TGCGCA 1 cut(s) 422
GlaI GCGC 8 cut(s) 82, 205, 230, 344, 422, 644, 1101, 1276
GsuI CTGGAG 3 cut(s) 809, 962, 1685
HaeII RGCGCY 6 cut(s) 84, 207, 232, 646, 1103, 1278
HaeIII GGCC 7 cut(s) 35, 60, 536, 701, 1037, 1465, 1522
HapII CCGG 6 cut(s) 226, 472, 578, 797, 911, 1304
HgaI GACGC 4 cut(s) 583, 1229, 1374, 1608
HhaI GCGC 8 cut(s) 83, 206, 231, 345, 423, 645, 1102, 1277
Hin1I GRCGYC 4 cut(s) 229, 575, 1275, 1385
Hin6I GCGC 8 cut(s) 81, 204, 229, 343, 421, 643, 1100, 1275
HinP1I GCGC 8 cut(s) 81, 204, 229, 343, 421, 643, 1100, 1275
HinfI GANTC 1 cut(s) 1052
HpaII CCGG 6 cut(s) 226, 472, 578, 797, 911, 1304
HphI GGTGA 1 cut(s) 958
Hpy166II GTNNAC 6 cut(s) 736, 814, 1301, 1598, 1600, 1606
Hpy188I TCNGA 8 cut(s) 298, 370, 461, 567, 711, 836, 904, 1660
Hpy188III TCNNGA 5 cut(s) 265, 377, 440, 527, 886
Hpy8I GTNNAC 6 cut(s) 736, 814, 1301, 1598, 1600, 1606
Hpy99I CGWCG 6 cut(s) 260, 577, 1567, 1570, 1573, 1624
HpyAV CCTTC 3 cut(s) 34, 1090, 1187
HpyCH4III ACNGT 1 cut(s) 803
HpyCH4IV ACGT 5 cut(s) 102, 156, 425, 1602, 1647
HpyF3I CTNAG 4 cut(s) 170, 525, 649, 901
HpySE526I ACGT 5 cut(s) 102, 156, 425, 1602, 1647
Hsp92I GRCGYC 4 cut(s) 229, 575, 1275, 1385
HspAI GCGC 8 cut(s) 81, 204, 229, 343, 421, 643, 1100, 1275
KasI GGCGCC 2 cut(s) 228, 1274
KroI GCCGGC 1 cut(s) 471
KroNI GCCGGC 1 cut(s) 473
Kzo9I GATC 7 cut(s) 252, 520, 792, 819, 995, 1198, 1576
LguI GCTCTTC 2 cut(s) 16, 1158
LmnI GCTCC 5 cut(s) 395, 639, 784, 902, 1006
Lsp1109I GCAGC 7 cut(s) 90, 276, 631, 640, 643, 1089, 1603
LweI GCATC 6 cut(s) 219, 606, 771, 840, 1717, 1719
MaeI CTAG 4 cut(s) 98, 612, 1013, 1532
MaeII ACGT 5 cut(s) 102, 156, 425, 1602, 1647
MaeIII GTNAC 1 cut(s) 1793
MalI GATC 7 cut(s) 254, 522, 794, 821, 997, 1200, 1578
MboI GATC 7 cut(s) 252, 520, 792, 819, 995, 1198, 1576
MflI RGATCY 3 cut(s) 520, 792, 819
MhlI GDGCHC 1 cut(s) 899
MlsI TGGCCA 1 cut(s) 1037
MluCI AATT 8 cut(s) 14, 165, 394, 512, 541, 842, 1170, 1250
MluNI TGGCCA 1 cut(s) 1037
Mly113I GGCGCC 2 cut(s) 229, 1275
MmeI TCCRAC 1 cut(s) 307
Mox20I TGGCCA 1 cut(s) 1037
Mph1103I ATGCAT 1 cut(s) 433
MroNI GCCGGC 1 cut(s) 471
MscI TGGCCA 1 cut(s) 1037
MseI TTAA 3 cut(s) 176, 767, 1173
MslI CAYNNNNRTG 3 cut(s) 1306, 1713, 1784
Msp20I TGGCCA 1 cut(s) 1037
MspI CCGG 6 cut(s) 226, 472, 578, 797, 911, 1304
MspR9I CCNGG 7 cut(s) 226, 400, 731, 797, 911, 1467, 1664
Mva1269I GAATGC 3 cut(s) 468, 491, 1093
MvaI CCWGG 4 cut(s) 400, 731, 1467, 1664
MvnI CGCG 4 cut(s) 192, 345, 378, 1346
NaeI GCCGGC 1 cut(s) 473
NarI GGCGCC 2 cut(s) 229, 1275
NciI CCSGG 3 cut(s) 226, 797, 911
NdeII GATC 7 cut(s) 252, 520, 792, 819, 995, 1198, 1576
NgoMIV GCCGGC 1 cut(s) 471
NheI GCTAGC 1 cut(s) 1531
NlaIV GGNNCC 4 cut(s) 34, 230, 1276, 1608
NruI TCGCGA 1 cut(s) 378
NsbI TGCGCA 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 433
NspI RCATGY 4 cut(s) 183, 367, 657, 862
NspV TTCGAA 1 cut(s) 516
PceI AGGCCT 1 cut(s) 60
PciI ACATGT 1 cut(s) 363
PciSI GCTCTTC 2 cut(s) 16, 1158
PcsI WCGNNNNNNNCGW 1 cut(s) 1568
PctI GAATGC 3 cut(s) 468, 491, 1093
PdiI GCCGGC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 1052
Pfl23II CGTACG 1 cut(s) 157
PflMI CCANNNNNTGG 3 cut(s) 249, 399, 1472
PfoI TCCNGGA 1 cut(s) 795
PluTI GGCGCC 2 cut(s) 232, 1278
PmaCI CACGTG 1 cut(s) 1603
PmlI CACGTG 1 cut(s) 1603
Ppu21I YACGTR 4 cut(s) 157, 426, 1603, 1648
PscI ACATGT 1 cut(s) 363
Psp6I CCWGG 4 cut(s) 398, 729, 1465, 1662
PspCI CACGTG 1 cut(s) 1603
PspGI CCWGG 4 cut(s) 398, 729, 1465, 1662
PspLI CGTACG 1 cut(s) 157
PspN4I GGNNCC 4 cut(s) 34, 230, 1276, 1608
PspPI GGNCC 6 cut(s) 33, 43, 94, 1298, 1463, 1606
PstI CTGCAG 1 cut(s) 1516
PstNI CAGNNNCTG 1 cut(s) 1681
PsuI RGATCY 3 cut(s) 520, 792, 819
RruI TCGCGA 1 cut(s) 378
RsaI GTAC 6 cut(s) 159, 815, 908, 959, 1430, 1599
RsaNI GTAC 6 cut(s) 158, 814, 907, 958, 1429, 1598
RseI CAYNNNNRTG 3 cut(s) 1306, 1713, 1784
SapI GCTCTTC 2 cut(s) 16, 1158
SaqAI TTAA 3 cut(s) 176, 767, 1173
Sau3AI GATC 7 cut(s) 252, 520, 792, 819, 995, 1198, 1576
Sau96I GGNCC 6 cut(s) 33, 43, 94, 1298, 1463, 1606
ScrFI CCNGG 7 cut(s) 226, 400, 731, 797, 911, 1467, 1664
SduI GDGCHC 1 cut(s) 899
SfaNI GCATC 6 cut(s) 219, 606, 771, 840, 1717, 1719
SfcI CTRYAG 1 cut(s) 1512
SfoI GGCGCC 2 cut(s) 230, 1276
SfuI TTCGAA 1 cut(s) 516
SgrAI CRCCGGYG 1 cut(s) 577
SinI GGWCC 4 cut(s) 43, 94, 1298, 1606
SmiMI CAYNNNNRTG 3 cut(s) 1306, 1713, 1784
SmlI CTYRAG 4 cut(s) 263, 452, 638, 984
SmoI CTYRAG 4 cut(s) 263, 452, 638, 984
SnaBI TACGTA 1 cut(s) 157
Sse9I AATT 8 cut(s) 14, 165, 394, 512, 541, 842, 1170, 1250
SseBI AGGCCT 1 cut(s) 60
SspDI GGCGCC 2 cut(s) 228, 1274
SspI AATATT 1 cut(s) 327
SspMI CTAG 4 cut(s) 98, 612, 1013, 1532
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 7 cut(s) 224, 398, 729, 795, 909, 1465, 1662
StyI CCWWGG 1 cut(s) 807
TaaI ACNGT 1 cut(s) 803
TaiI ACGT 5 cut(s) 105, 159, 428, 1605, 1650
TaqI TCGA 3 cut(s) 516, 846, 1229
TaqII GACCGA 1 cut(s) 158
TasI AATT 8 cut(s) 14, 165, 394, 512, 541, 842, 1170, 1250
TatI WGTACW 2 cut(s) 957, 1597
TauI GCSGC 7 cut(s) 348, 536, 831, 1346, 1454, 1636, 1639
TfiI GAWTC 1 cut(s) 1052
Tru1I TTAA 3 cut(s) 176, 767, 1173
Tru9I TTAA 3 cut(s) 176, 767, 1173
TscAI CASTG 3 cut(s) 493, 1285, 1501
TseI GCWGC 7 cut(s) 78, 289, 619, 628, 631, 1102, 1616
TspDTI ATGAA 9 cut(s) 187, 519, 525, 600, 605, 769, 864, 1100, 1109
TspGWI ACGGA 1 cut(s) 1437
TspRI CASTG 3 cut(s) 493, 1285, 1501
Van91I CCANNNNNTGG 3 cut(s) 249, 399, 1472
VpaK11BI GGWCC 4 cut(s) 43, 94, 1298, 1606
XapI RAATTY 3 cut(s) 14, 165, 512
XceI RCATGY 4 cut(s) 183, 367, 657, 862
XmiI GTMKAC 1 cut(s) 735
XspI CTAG 4 cut(s) 98, 612, 1013, 1532
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.